Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2395
  Reference Plasmid   1111525849768046_bin.37__k141_170770
  Reference Plasmid Size   16059
  Reference Plasmid GC Content   0.37
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0121590 CCOOBIIL_00007 5800 5 Oral 0.38 protein_coding synonymous_variant LOW 168C>T Ile56Ile
M0121591 CCOOBIIL_00007 5998 4 Oral 0.31 protein_coding synonymous_variant LOW 366A>G Ala122Ala
M0121592 CCOOBIIL_00007 6028 4 Oral 0.31 protein_coding synonymous_variant LOW 396T>A Ala132Ala
M0121593 CCOOBIIL_00007 6052 3 Oral 0.23 protein_coding synonymous_variant LOW 420T>C Ile140Ile
M0121594 CCOOBIIL_00007 6058 3 Oral 0.23 protein_coding synonymous_variant LOW 426T>C Thr142Thr
M0121595 CCOOBIIL_00007 6433 3 Oral 0.23 protein_coding synonymous_variant LOW 801C>T Leu267Leu
M0121596 CCOOBIIL_00008 6903 5 Oral 0.38 protein_coding missense_variant MODERATE 70A>C Thr24Pro
M0121597 CCOOBIIL_00008 7094 3 Oral 0.23 protein_coding synonymous_variant LOW 261A>T Ile87Ile
M0121598 CCOOBIIL_00008 7349 3 Oral 0.23 protein_coding synonymous_variant LOW 516C>T Ile172Ile
M0121599 CCOOBIIL_00008 7469 3 Oral 0.23 protein_coding synonymous_variant LOW 636T>C Ile212Ile
M0121600 CCOOBIIL_00008 7686 4 Oral 0.31 protein_coding missense_variant MODERATE 853A>C Ile285Leu
M0121601 CCOOBIIL_00004 8770 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -4505A>G None
M0121602 CCOOBIIL_00009 9448 4 Oral 0.31 protein_coding synonymous_variant LOW 453T>C Asn151Asn
M0121603 CCOOBIIL_00009 9634 5 Oral 0.38 protein_coding synonymous_variant LOW 639C>T Gly213Gly
M0121604 CCOOBIIL_00009 9823 3 Oral 0.23 protein_coding synonymous_variant LOW 828T>A Pro276Pro
M0121605 CCOOBIIL_00009 9829 3 Oral 0.23 protein_coding synonymous_variant LOW 834A>T Val278Val
M0121606 CCOOBIIL_00009 9832 3 Oral 0.23 protein_coding synonymous_variant LOW 837T>C Ile279Ile
M0121607 CCOOBIIL_00009 9934 3 Oral 0.23 protein_coding synonymous_variant LOW 939T>C Ile313Ile
M0121608 CCOOBIIL_00009 10228 3 Oral 0.23 protein_coding synonymous_variant LOW 1233T>C Tyr411Tyr
M0121609 CCOOBIIL_00009 10234 3 Oral 0.23 protein_coding synonymous_variant LOW 1239C>T Asn413Asn
M0121610 CCOOBIIL_00009 10249 3 Oral 0.23 protein_coding missense_variant MODERATE 1254A>C Lys418Asn
M0121611 CCOOBIIL_00009 10255 3 Oral 0.23 protein_coding synonymous_variant LOW 1260G>C Val420Val
M0121612 CCOOBIIL_00009 10256 4 Oral 0.31 protein_coding synonymous_variant LOW 1261C>T Leu421Leu
M0121613 CCOOBIIL_00009 10378 8 Oral 0.62 protein_coding synonymous_variant LOW 1383A>T Pro461Pro
M0121614 CCOOBIIL_00009 10585 3 Oral 0.23 protein_coding missense_variant MODERATE 1590G>C Glu530Asp
M0121615 CCOOBIIL_00009 10588 3 Oral 0.23 protein_coding synonymous_variant LOW 1593T>C Ile531Ile
M0121616 CCOOBIIL_00012 10927 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -2514T>G None
M0121617 CCOOBIIL_00010 10943 4 Oral 0.31 protein_coding synonymous_variant LOW 606T>A Leu202Leu
M0121618 CCOOBIIL_00010 10946 3 Oral 0.23 protein_coding synonymous_variant LOW 603G>A Leu201Leu
M0121619 CCOOBIIL_00010 11168 7 Oral 0.54 protein_coding synonymous_variant LOW 381A>G Ala127Ala
M0121620 CCOOBIIL_00010 11225 7 Oral 0.54 protein_coding synonymous_variant LOW 324G>A Glu108Glu
M0121621 CCOOBIIL_00010 11318 7 Oral 0.54 protein_coding synonymous_variant LOW 231T>A Gly77Gly
M0121622 CCOOBIIL_00010 11341 3 Oral 0.23 protein_coding synonymous_variant LOW 208C>A Arg70Arg
M0121623 CCOOBIIL_00010 11399 7 Oral 0.54 protein_coding synonymous_variant LOW 150A>G Gln50Gln
M0121624 CCOOBIIL_00010 11435 6 Oral 0.46 protein_coding synonymous_variant LOW 114A>T Arg38Arg
M0121625 CCOOBIIL_00010 11468 3 Oral 0.23 protein_coding synonymous_variant LOW 81A>G Thr27Thr
M0121626 CCOOBIIL_00010 11531 3 Oral 0.23 protein_coding synonymous_variant LOW 18T>C Asn6Asn
M0121627 CCOOBIIL_00011 11713 4 Oral 0.31 protein_coding synonymous_variant LOW 1644A>T Thr548Thr
M0121628 CCOOBIIL_00011 11764 7 Oral 0.54 protein_coding synonymous_variant LOW 1593C>T Gly531Gly
M0121629 CCOOBIIL_00011 11776 3 Oral 0.23 protein_coding synonymous_variant LOW 1581A>G Gln527Gln
M0121630 CCOOBIIL_00011 11782 6 Oral 0.46 protein_coding synonymous_variant LOW 1575A>T Ala525Ala
M0121631 CCOOBIIL_00011 11851 7 Oral 0.54 protein_coding synonymous_variant LOW 1506T>C Ala502Ala
M0121632 CCOOBIIL_00011 11863 7 Oral 0.54 protein_coding synonymous_variant LOW 1494T>C His498His
M0121633 CCOOBIIL_00011 11902 6 Oral 0.46 protein_coding synonymous_variant LOW 1455A>G Leu485Leu
M0121634 CCOOBIIL_00011 12226 7 Oral 0.54 protein_coding synonymous_variant LOW 1131T>A Thr377Thr
M0121635 CCOOBIIL_00011 12262 5 Oral 0.38 protein_coding synonymous_variant LOW 1095G>A Pro365Pro
M0121636 CCOOBIIL_00011 12382 7 Oral 0.54 protein_coding synonymous_variant LOW 975A>C Pro325Pro
M0121637 CCOOBIIL_00011 12409 7 Oral 0.54 protein_coding synonymous_variant LOW 948A>G Leu316Leu
M0121638 CCOOBIIL_00011 12412 7 Oral 0.54 protein_coding synonymous_variant LOW 945A>G Gln315Gln
M0121639 CCOOBIIL_00011 12487 5 Oral 0.38 protein_coding synonymous_variant LOW 870C>T Pro290Pro
M0121640 CCOOBIIL_00011 12502 7 Oral 0.54 protein_coding synonymous_variant LOW 855T>C Phe285Phe
M0121641 CCOOBIIL_00011 12517 7 Oral 0.54 protein_coding synonymous_variant LOW 840G>A Ala280Ala
M0121642 CCOOBIIL_00011 12595 4 Oral 0.31 protein_coding synonymous_variant LOW 762T>C Tyr254Tyr
M0121643 CCOOBIIL_00011 12628 5 Oral 0.38 protein_coding synonymous_variant LOW 729T>C Pro243Pro
M0121644 CCOOBIIL_00011 12658 4 Oral 0.31 protein_coding synonymous_variant LOW 699G>A Glu233Glu
M0121645 CCOOBIIL_00011 12892 4 Oral 0.31 protein_coding synonymous_variant LOW 465T>C Ile155Ile
M0121646 CCOOBIIL_00011 12925 7 Oral 0.54 protein_coding synonymous_variant LOW 432C>T Ile144Ile
M0121647 CCOOBIIL_00011 12937 3 Oral 0.23 protein_coding synonymous_variant LOW 420G>A Val140Val
M0121648 CCOOBIIL_00011 12940 7 Oral 0.54 protein_coding synonymous_variant LOW 417G>A Glu139Glu
M0121649 CCOOBIIL_00011 12982 7 Oral 0.54 protein_coding synonymous_variant LOW 375T>A Pro125Pro
M0121650 CCOOBIIL_00011 13030 7 Oral 0.54 protein_coding synonymous_variant LOW 327A>T Thr109Thr
M0121651 CCOOBIIL_00011 13045 7 Oral 0.54 protein_coding synonymous_variant LOW 312C>T Gly104Gly
M0121652 CCOOBIIL_00011 13138 3 Oral 0.23 protein_coding synonymous_variant LOW 219A>T Ile73Ile
M0121653 CCOOBIIL_00011 13210 3 Oral 0.23 protein_coding synonymous_variant LOW 147C>T Gly49Gly
M0121654 CCOOBIIL_00011 13267 5 Oral 0.38 protein_coding synonymous_variant LOW 90A>C Thr30Thr
M0121655 CCOOBIIL_00011 13288 7 Oral 0.54 protein_coding synonymous_variant LOW 69T>C Arg23Arg
M0121656 CCOOBIIL_00012 13497 6 Oral 0.46 protein_coding synonymous_variant LOW 57T>C Cys19Cys
M0121657 CCOOBIIL_00012 13515 6 Oral 0.46 protein_coding synonymous_variant LOW 75T>C Asp25Asp
M0121658 CCOOBIIL_00012 13593 5 Oral 0.38 protein_coding synonymous_variant LOW 153C>T Ser51Ser
M0121659 CCOOBIIL_00012 13608 4 Oral 0.31 protein_coding synonymous_variant LOW 168A>G Lys56Lys
M0121660 CCOOBIIL_00012 13647 3 Oral 0.23 protein_coding synonymous_variant LOW 207C>T Asp69Asp
M0121661 CCOOBIIL_00012 13665 3 Oral 0.23 protein_coding synonymous_variant LOW 225A>G Glu75Glu
M0121662 CCOOBIIL_00012 13680 3 Oral 0.23 protein_coding synonymous_variant LOW 240C>T Asn80Asn
M0121663 CCOOBIIL_00012 13683 3 Oral 0.23 protein_coding synonymous_variant LOW 243A>G Lys81Lys
M0121664 CCOOBIIL_00012 13686 3 Oral 0.23 protein_coding synonymous_variant LOW 246G>A Gln82Gln
M0121665 CCOOBIIL_00012 13689 3 Oral 0.23 protein_coding synonymous_variant LOW 249C>T Ala83Ala
M0121666 CCOOBIIL_00012 13707 3 Oral 0.23 protein_coding missense_variant MODERATE 267G>C Gln89His
M0121667 CCOOBIIL_00012 13713 5 Oral 0.38 protein_coding missense_variant MODERATE 273A>G Ile91Met
M0121668 CCOOBIIL_00012 13783 5 Oral 0.38 protein_coding missense_variant MODERATE 343G>A Ala115Thr
M0121669 CCOOBIIL_00012 13824 4 Oral 0.31 protein_coding synonymous_variant LOW 384A>G Ser128Ser
M0121670 CCOOBIIL_00010 13846 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2298A>G None
M0121671 CCOOBIIL_00010 13903 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2355A>G None
M0121672 CCOOBIIL_00013 14130 3 Oral 0.23 protein_coding synonymous_variant LOW 201T>C His67His
M0121673 CCOOBIIL_00013 14373 3 Oral 0.23 protein_coding synonymous_variant LOW 444G>A Gly148Gly
M0121674 CCOOBIIL_00013 14376 3 Oral 0.23 protein_coding synonymous_variant LOW 447C>T Ala149Ala
M0121675 CCOOBIIL_00013 14619 3 Oral 0.23 protein_coding synonymous_variant LOW 690A>G Lys230Lys
M0121676 CCOOBIIL_00014 15091 3 Oral 0.23 protein_coding synonymous_variant LOW 234T>C Ala78Ala
M0121677 CCOOBIIL_00014 15095 3 Oral 0.23 protein_coding missense_variant MODERATE 238A>G Ile80Val
M0121678 CCOOBIIL_00014 15232 3 Oral 0.23 protein_coding synonymous_variant LOW 375C>T Phe125Phe
M0121679 CCOOBIIL_00014 15235 3 Oral 0.23 protein_coding synonymous_variant LOW 378A>G Lys126Lys
M0121680 CCOOBIIL_00014 15257 3 Oral 0.23 protein_coding synonymous_variant LOW 400T>C Leu134Leu
M0121681 CCOOBIIL_00005 591 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -3899G>A None
M0121682 CCOOBIIL_00005 609 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -3881G>A None
M0121683 CCOOBIIL_00005 831 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -3659T>G None
M0121684 CCOOBIIL_00005 894 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -3596C>T None
M0121685 CCOOBIIL_00005 954 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -3536T>C None
M0121686 CCOOBIIL_00005 1024 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -3466C>T None
M0121687 CCOOBIIL_00001 1095 4 Oral 0.31 protein_coding synonymous_variant LOW 921A>T Val307Val
M0121688 CCOOBIIL_00001 1101 4 Oral 0.31 protein_coding synonymous_variant LOW 915A>G Leu305Leu
M0121689 CCOOBIIL_00001 1198 3 Oral 0.23 protein_coding missense_variant MODERATE 818A>C Asp273Ala
M0121690 CCOOBIIL_00001 1260 4 Oral 0.31 protein_coding synonymous_variant LOW 756T>C Thr252Thr
M0121691 CCOOBIIL_00001 1299 3 Oral 0.23 protein_coding synonymous_variant LOW 717T>C Gly239Gly
M0121692 CCOOBIIL_00001 1377 4 Oral 0.31 protein_coding synonymous_variant LOW 639T>C Asn213Asn
M0121693 CCOOBIIL_00001 1382 3 Oral 0.23 protein_coding missense_variant MODERATE 634A>C Lys212Gln
M0121694 CCOOBIIL_00001 1404 4 Oral 0.31 protein_coding synonymous_variant LOW 612T>C Thr204Thr
M0121695 CCOOBIIL_00001 1515 4 Oral 0.31 protein_coding synonymous_variant LOW 501T>G Ala167Ala
M0121696 CCOOBIIL_00001 1569 4 Oral 0.31 protein_coding synonymous_variant LOW 447T>A Val149Val
M0121697 CCOOBIIL_00001 1596 3 Oral 0.23 protein_coding synonymous_variant LOW 420T>C Tyr140Tyr
M0121698 CCOOBIIL_00001 1644 4 Oral 0.31 protein_coding synonymous_variant LOW 372T>A Val124Val
M0121699 CCOOBIIL_00001 1680 3 Oral 0.23 protein_coding synonymous_variant LOW 336A>G Leu112Leu
M0121700 CCOOBIIL_00001 1716 4 Oral 0.31 protein_coding synonymous_variant LOW 300A>G Val100Val
M0121701 CCOOBIIL_00001 1791 4 Oral 0.31 protein_coding synonymous_variant LOW 225T>C Gly75Gly
M0121702 CCOOBIIL_00001 1836 3 Oral 0.23 protein_coding synonymous_variant LOW 180C>T Ser60Ser
M0121703 CCOOBIIL_00001 1866 4 Oral 0.31 protein_coding synonymous_variant LOW 150T>C Gly50Gly
M0121704 CCOOBIIL_00001 1968 3 Oral 0.23 protein_coding synonymous_variant LOW 48A>C Ala16Ala
M0121705 CCOOBIIL_00002 2132 3 Oral 0.23 protein_coding synonymous_variant LOW 642A>G Lys214Lys
M0121706 CCOOBIIL_00002 2360 3 Oral 0.23 protein_coding synonymous_variant LOW 414A>C Pro138Pro
M0121707 CCOOBIIL_00002 2363 3 Oral 0.23 protein_coding synonymous_variant LOW 411C>T Tyr137Tyr
M0121708 CCOOBIIL_00002 2417 3 Oral 0.23 protein_coding synonymous_variant LOW 357C>T Gly119Gly
M0121709 CCOOBIIL_00002 2471 3 Oral 0.23 protein_coding synonymous_variant LOW 303T>A Ile101Ile
M0121710 CCOOBIIL_00002 2486 3 Oral 0.23 protein_coding synonymous_variant LOW 288T>C Cys96Cys
M0121711 CCOOBIIL_00002 2495 3 Oral 0.23 protein_coding synonymous_variant LOW 279G>A Gly93Gly
M0121712 CCOOBIIL_00002 2687 3 Oral 0.23 protein_coding synonymous_variant LOW 87G>A Lys29Lys
M0121713 CCOOBIIL_00002 2766 3 Oral 0.23 protein_coding missense_variant MODERATE 8C>A Thr3Lys
M0121714 CCOOBIIL_00001 3011 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -996A>G None
M0121715 CCOOBIIL_00003 3152 3 Oral 0.23 protein_coding synonymous_variant LOW 600G>T Gly200Gly
M0121716 CCOOBIIL_00003 3306 3 Oral 0.23 protein_coding missense_variant MODERATE 446A>G His149Arg
M0121717 CCOOBIIL_00003 3362 3 Oral 0.23 protein_coding synonymous_variant LOW 390T>C Pro130Pro
M0121718 CCOOBIIL_00003 3428 3 Oral 0.23 protein_coding synonymous_variant LOW 324T>C Asn108Asn
M0121719 CCOOBIIL_00003 3447 3 Oral 0.23 protein_coding missense_variant MODERATE 305G>A Arg102Lys
M0121720 CCOOBIIL_00003 3449 3 Oral 0.23 protein_coding synonymous_variant LOW 303T>C Asn101Asn
M0121721 CCOOBIIL_00003 3473 3 Oral 0.23 protein_coding synonymous_variant LOW 279C>T Ser93Ser
M0121722 CCOOBIIL_00003 3500 3 Oral 0.23 protein_coding synonymous_variant LOW 252T>C Tyr84Tyr
M0121723 CCOOBIIL_00003 3662 3 Oral 0.23 protein_coding synonymous_variant LOW 90G>A Arg30Arg
M0121724 CCOOBIIL_00004 3768 3 Oral 0.23 protein_coding synonymous_variant LOW 498T>A Thr166Thr
M0121725 CCOOBIIL_00004 3771 3 Oral 0.23 protein_coding synonymous_variant LOW 495C>T Asn165Asn
M0121726 CCOOBIIL_00004 3801 3 Oral 0.23 protein_coding missense_variant MODERATE 465T>G Asp155Glu
M0121727 CCOOBIIL_00004 3834 3 Oral 0.23 protein_coding synonymous_variant LOW 432T>C Tyr144Tyr
M0121728 CCOOBIIL_00001 4359 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2344G>A None
M0121729 CCOOBIIL_00001 4383 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2368A>G None
M0121730 CCOOBIIL_00001 4393 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2378A>T None
M0121731 CCOOBIIL_00005 4504 3 Oral 0.23 protein_coding synonymous_variant LOW 15C>T Asp5Asp
M0121732 CCOOBIIL_00005 4546 3 Oral 0.23 protein_coding synonymous_variant LOW 57A>G Val19Val
M0121733 CCOOBIIL_00005 4575 3 Oral 0.23 protein_coding missense_variant MODERATE 86C>A Pro29Gln
M0121734 CCOOBIIL_00005 4660 3 Oral 0.23 protein_coding synonymous_variant LOW 171A>C Leu57Leu
M0121735 CCOOBIIL_00005 4726 3 Oral 0.23 protein_coding synonymous_variant LOW 237A>G Glu79Glu
M0121736 CCOOBIIL_00005 4738 3 Oral 0.23 protein_coding synonymous_variant LOW 249A>G Leu83Leu
M0121737 CCOOBIIL_00005 4804 3 Oral 0.23 protein_coding synonymous_variant LOW 315C>T Ala105Ala
M0121738 CCOOBIIL_00005 4831 3 Oral 0.23 protein_coding synonymous_variant LOW 342T>G Ala114Ala
M0121739 CCOOBIIL_00005 4931 4 Oral 0.31 protein_coding missense_variant MODERATE 442A>G Thr148Ala
M0121740 CCOOBIIL_00005 4942 4 Oral 0.31 protein_coding synonymous_variant LOW 453A>G Lys151Lys
M0121741 CCOOBIIL_00005 4987 4 Oral 0.31 protein_coding synonymous_variant LOW 498A>C Pro166Pro
M0121742 CCOOBIIL_00005 5041 3 Oral 0.23 protein_coding synonymous_variant LOW 552A>G Arg184Arg
M0121743 CCOOBIIL_00005 5068 4 Oral 0.31 protein_coding synonymous_variant LOW 579C>A Ala193Ala
M0121744 CCOOBIIL_00005 5233 4 Oral 0.31 protein_coding synonymous_variant LOW 744G>A Glu248Glu
M0121745 CCOOBIIL_00005 5275 4 Oral 0.31 protein_coding synonymous_variant LOW 786G>A Ala262Ala
M0121746 CCOOBIIL_00005 5282 4 Oral 0.31 protein_coding synonymous_variant LOW 793T>C Leu265Leu
M0121747 CCOOBIIL_00005 5284 4 Oral 0.31 protein_coding synonymous_variant LOW 795A>G Leu265Leu
M0121748 CCOOBIIL_00006 5323 3 Oral 0.23 protein_coding missense_variant MODERATE 95G>A Gly32Glu
M0121749 CCOOBIIL_00006 5374 3 Oral 0.23 protein_coding missense_variant MODERATE 44A>G Tyr15Cys
M0121750 CCOOBIIL_00001 5559 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -3544T>G None
M0121751 CCOOBIIL_00001 5583 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -3568T>C None
M0121752 CCOOBIIL_00007 5722 4 Oral 0.31 protein_coding synonymous_variant LOW 90T>A Gly30Gly
M0121753 CCOOBIIL_00003 8313 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -4562G>A None
M0121754 CCOOBIIL_00009 10312 4 Oral 0.31 protein_coding synonymous_variant LOW 1317C>T Gly439Gly
M0121755 CCOOBIIL_00009 10624 5 Oral 0.38 protein_coding synonymous_variant LOW 1629G>A Lys543Lys
M0121756 CCOOBIIL_00005 311 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -4179T>C None
M0121757 CCOOBIIL_00005 317 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -4173C>A None
M0121758 CCOOBIIL_00005 385 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -4105G>T None
M0121759 CCOOBIIL_00005 387 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -4103C>T None
M0121760 CCOOBIIL_00009 9628 3 Oral 0.23 protein_coding synonymous_variant LOW 633A>G Val211Val
M0121761 CCOOBIIL_00009 9670 3 Oral 0.23 protein_coding synonymous_variant LOW 675T>C Ile225Ile
M0121762 CCOOBIIL_00009 9682 3 Oral 0.23 protein_coding synonymous_variant LOW 687T>A Ala229Ala
M0121763 CCOOBIIL_00009 9799 3 Oral 0.23 protein_coding synonymous_variant LOW 804A>G Lys268Lys
M0121764 CCOOBIIL_00009 10648 3 Oral 0.23 protein_coding synonymous_variant LOW 1653T>C Tyr551Tyr
M0121765 CCOOBIIL_00012 10659 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -2782C>T None
M0121766 CCOOBIIL_00012 10670 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -2771A>G None
M0121767 CCOOBIIL_00012 10672 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -2769T>C None
M0121768 CCOOBIIL_00012 10680 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -2761T>C None
M0121769 CCOOBIIL_00012 10741 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -2700G>A None
M0121770 CCOOBIIL_00012 10747 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2694A>G None
M0121771 CCOOBIIL_00012 10801 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2640C>T None
M0121772 CCOOBIIL_00012 10826 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2615A>G None
M0121773 CCOOBIIL_00010 11101 3 Oral 0.23 protein_coding missense_variant MODERATE 448G>A Val150Ile
M0121774 CCOOBIIL_00010 11120 3 Oral 0.23 protein_coding synonymous_variant LOW 429G>A Glu143Glu
M0121775 CCOOBIIL_00011 11812 5 Oral 0.38 protein_coding synonymous_variant LOW 1545T>C Asp515Asp
M0121776 CCOOBIIL_00011 11838 5 Oral 0.38 protein_coding synonymous_variant LOW 1519A>C Arg507Arg
M0121777 CCOOBIIL_00011 11854 3 Oral 0.23 protein_coding synonymous_variant LOW 1503T>C Asn501Asn
M0121778 CCOOBIIL_00011 11890 6 Oral 0.46 protein_coding synonymous_variant LOW 1467T>A Pro489Pro
M0121779 CCOOBIIL_00011 11908 6 Oral 0.46 protein_coding synonymous_variant LOW 1449T>C Ile483Ile
M0121780 CCOOBIIL_00011 12016 4 Oral 0.31 protein_coding synonymous_variant LOW 1341G>A Glu447Glu
M0121781 CCOOBIIL_00011 12082 5 Oral 0.38 protein_coding synonymous_variant LOW 1275G>A Glu425Glu
M0121782 CCOOBIIL_00011 12106 5 Oral 0.38 protein_coding synonymous_variant LOW 1251G>A Lys417Lys
M0121783 CCOOBIIL_00011 12298 6 Oral 0.46 protein_coding synonymous_variant LOW 1059T>C Asp353Asp
M0121784 CCOOBIIL_00011 12616 4 Oral 0.31 protein_coding synonymous_variant LOW 741G>A Val247Val
M0121785 CCOOBIIL_00012 13587 4 Oral 0.31 protein_coding synonymous_variant LOW 147C>T Thr49Thr
M0121786 CCOOBIIL_00009 10330 3 Oral 0.23 protein_coding synonymous_variant LOW 1335T>C Gly445Gly
M0121787 CCOOBIIL_00009 10396 3 Oral 0.23 protein_coding synonymous_variant LOW 1401G>A Lys467Lys
M0121788 CCOOBIIL_00009 10432 3 Oral 0.23 protein_coding synonymous_variant LOW 1437C>T Val479Val
M0121789 CCOOBIIL_00009 10529 3 Oral 0.23 protein_coding missense_variant MODERATE 1534A>G Thr512Ala
M0121790 CCOOBIIL_00012 10824 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2617G>A None
M0121791 CCOOBIIL_00012 10827 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -2614G>A None
M0121792 CCOOBIIL_00012 10831 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2610T>C None
M0121793 CCOOBIIL_00012 10842 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2599C>A None
M0121794 CCOOBIIL_00012 10874 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2567C>T None
M0121795 CCOOBIIL_00010 10937 3 Oral 0.23 protein_coding synonymous_variant LOW 612C>T Asp204Asp
M0121796 CCOOBIIL_00011 11737 5 Oral 0.38 protein_coding synonymous_variant LOW 1620T>A Ile540Ile
M0121797 CCOOBIIL_00011 12136 4 Oral 0.31 protein_coding synonymous_variant LOW 1221C>T Thr407Thr
M0121798 CCOOBIIL_00011 12181 5 Oral 0.38 protein_coding synonymous_variant LOW 1176C>T Ala392Ala
M0121799 CCOOBIIL_00012 10708 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2733G>A None
M0121800 CCOOBIIL_00012 10716 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2725A>T None
M0121801 CCOOBIIL_00011 11719 4 Oral 0.31 protein_coding synonymous_variant LOW 1638C>T Asp546Asp
M0121802 CCOOBIIL_00011 11727 3 Oral 0.23 protein_coding synonymous_variant LOW 1630A>C Arg544Arg
M0121803 CCOOBIIL_00011 11743 3 Oral 0.23 protein_coding synonymous_variant LOW 1614G>A Glu538Glu
M0121804 CCOOBIIL_00011 12046 3 Oral 0.23 protein_coding synonymous_variant LOW 1311A>T Val437Val
M0121805 CCOOBIIL_00011 12442 3 Oral 0.23 protein_coding synonymous_variant LOW 915G>A Glu305Glu
M0121806 CCOOBIIL_00011 12457 3 Oral 0.23 protein_coding synonymous_variant LOW 900C>T Asp300Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term