Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2399
  Reference Plasmid   1111525849768046_bin.37__k141_177673
  Reference Plasmid Size   13178
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0121956 JFNKJNJH_00001 76 4 Oral 0.57 protein_coding upstream_gene_variant MODIFIER -19A>C None
M0121957 JFNKJNJH_00001 376 4 Oral 0.57 protein_coding synonymous_variant LOW 282T>C Ser94Ser
M0121958 JFNKJNJH_00001 382 3 Oral 0.43 protein_coding synonymous_variant LOW 288C>T Thr96Thr
M0121959 JFNKJNJH_00001 436 3 Oral 0.43 protein_coding synonymous_variant LOW 342C>T Ala114Ala
M0121960 JFNKJNJH_00002 648 3 Oral 0.43 protein_coding synonymous_variant LOW 42T>A Ala14Ala
M0121961 JFNKJNJH_00002 1038 3 Oral 0.43 protein_coding synonymous_variant LOW 432G>A Glu144Glu
M0121962 JFNKJNJH_00002 1167 3 Oral 0.43 protein_coding synonymous_variant LOW 561T>A Pro187Pro
M0121963 JFNKJNJH_00002 1290 4 Oral 0.57 protein_coding synonymous_variant LOW 684T>C Ile228Ile
M0121964 JFNKJNJH_00002 1371 3 Oral 0.43 protein_coding synonymous_variant LOW 765A>G Leu255Leu
M0121965 JFNKJNJH_00002 1533 4 Oral 0.57 protein_coding synonymous_variant LOW 927T>C Leu309Leu
M0121966 JFNKJNJH_00002 1713 4 Oral 0.57 protein_coding synonymous_variant LOW 1107T>C Phe369Phe
M0121967 JFNKJNJH_00002 1908 4 Oral 0.57 protein_coding synonymous_variant LOW 1302T>C Asp434Asp
M0121968 JFNKJNJH_00002 1951 4 Oral 0.57 protein_coding missense_variant MODERATE 1345G>A Val449Ile
M0121969 JFNKJNJH_00002 2181 3 Oral 0.43 protein_coding synonymous_variant LOW 1575A>T Pro525Pro
M0121970 JFNKJNJH_00002 2238 4 Oral 0.57 protein_coding synonymous_variant LOW 1632T>C His544His
M0121971 JFNKJNJH_00002 2454 4 Oral 0.57 protein_coding synonymous_variant LOW 1848A>G Ala616Ala
M0121972 JFNKJNJH_00002 2625 4 Oral 0.57 protein_coding synonymous_variant LOW 2019C>T Thr673Thr
M0121973 JFNKJNJH_00002 2655 4 Oral 0.57 protein_coding synonymous_variant LOW 2049C>T Asn683Asn
M0121974 JFNKJNJH_00002 2688 3 Oral 0.43 protein_coding synonymous_variant LOW 2082A>G Gln694Gln
M0121975 JFNKJNJH_00002 2691 3 Oral 0.43 protein_coding synonymous_variant LOW 2085T>A Ser695Ser
M0121976 JFNKJNJH_00002 2706 4 Oral 0.57 protein_coding synonymous_variant LOW 2100C>A Ala700Ala
M0121977 JFNKJNJH_00002 2883 4 Oral 0.57 protein_coding synonymous_variant LOW 2277T>C Asn759Asn
M0121978 JFNKJNJH_00002 3039 4 Oral 0.57 protein_coding synonymous_variant LOW 2433A>G Leu811Leu
M0121979 JFNKJNJH_00002 3106 3 Oral 0.43 protein_coding synonymous_variant LOW 2500C>T Leu834Leu
M0121980 JFNKJNJH_00005 3223 4 Oral 0.57 protein_coding upstream_gene_variant MODIFIER -1164T>C None
M0121981 JFNKJNJH_00005 3226 4 Oral 0.57 protein_coding upstream_gene_variant MODIFIER -1161G>T None
M0121982 JFNKJNJH_00005 3234 3 Oral 0.43 protein_coding upstream_gene_variant MODIFIER -1153C>G None
M0121983 JFNKJNJH_00005 3290 4 Oral 0.57 protein_coding upstream_gene_variant MODIFIER -1097A>G None
M0121984 JFNKJNJH_00005 3299 3 Oral 0.43 protein_coding upstream_gene_variant MODIFIER -1088A>C None
M0121985 JFNKJNJH_00005 3355 4 Oral 0.57 protein_coding upstream_gene_variant MODIFIER -1032C>A None
M0121986 JFNKJNJH_00003 3521 4 Oral 0.57 protein_coding synonymous_variant LOW 159T>C Ala53Ala
M0121987 JFNKJNJH_00003 3608 5 Oral 0.71 protein_coding synonymous_variant LOW 72A>T Ala24Ala
M0121988 JFNKJNJH_00003 3701 3 Oral 0.43 protein_coding upstream_gene_variant MODIFIER -22A>G None
M0121989 JFNKJNJH_00004 3849 5 Oral 0.71 protein_coding missense_variant MODERATE 415A>G Asn139Asp
M0121990 JFNKJNJH_00004 4033 4 Oral 0.57 protein_coding synonymous_variant LOW 231G>A Ala77Ala
M0121991 JFNKJNJH_00004 4168 5 Oral 0.71 protein_coding synonymous_variant LOW 96A>G Val32Val
M0121992 JFNKJNJH_00004 4171 4 Oral 0.57 protein_coding synonymous_variant LOW 93G>A Glu31Glu
M0121993 JFNKJNJH_00004 4234 3 Oral 0.43 protein_coding synonymous_variant LOW 30C>A Ala10Ala
M0121994 JFNKJNJH_00005 4641 4 Oral 0.57 protein_coding synonymous_variant LOW 255C>T Ser85Ser
M0121995 JFNKJNJH_00005 4692 4 Oral 0.57 protein_coding synonymous_variant LOW 306G>A Leu102Leu
M0121996 JFNKJNJH_00005 4716 6 Oral 0.86 protein_coding synonymous_variant LOW 330A>T Pro110Pro
M0121997 JFNKJNJH_00005 4722 6 Oral 0.86 protein_coding synonymous_variant LOW 336T>C Tyr112Tyr
M0121998 JFNKJNJH_00005 4728 5 Oral 0.71 protein_coding synonymous_variant LOW 342T>G Ser114Ser
M0121999 JFNKJNJH_00005 4731 6 Oral 0.86 protein_coding synonymous_variant LOW 345A>G Glu115Glu
M0122000 JFNKJNJH_00005 4734 4 Oral 0.57 protein_coding synonymous_variant LOW 348A>G Val116Val
M0122001 JFNKJNJH_00005 4815 5 Oral 0.71 protein_coding synonymous_variant LOW 429T>C Asn143Asn
M0122002 JFNKJNJH_00005 4969 4 Oral 0.57 protein_coding synonymous_variant LOW 583T>C Leu195Leu
M0122003 JFNKJNJH_00005 4971 4 Oral 0.57 protein_coding synonymous_variant LOW 585G>A Leu195Leu
M0122004 JFNKJNJH_00005 4980 6 Oral 0.86 protein_coding synonymous_variant LOW 594T>G Gly198Gly
M0122005 JFNKJNJH_00005 4992 6 Oral 0.86 protein_coding synonymous_variant LOW 606T>C Ile202Ile
M0122006 JFNKJNJH_00005 4995 5 Oral 0.71 protein_coding synonymous_variant LOW 609T>C Asp203Asp
M0122007 JFNKJNJH_00005 5022 3 Oral 0.43 protein_coding synonymous_variant LOW 636A>T Thr212Thr
M0122008 JFNKJNJH_00005 5025 3 Oral 0.43 protein_coding synonymous_variant LOW 639G>A Ala213Ala
M0122009 JFNKJNJH_00005 5031 4 Oral 0.57 protein_coding synonymous_variant LOW 645T>A Ala215Ala
M0122010 JFNKJNJH_00005 5046 6 Oral 0.86 protein_coding synonymous_variant LOW 660T>C Ser220Ser
M0122011 JFNKJNJH_00005 5268 6 Oral 0.86 protein_coding synonymous_variant LOW 882A>C Arg294Arg
M0122012 JFNKJNJH_00006 5529 6 Oral 0.86 protein_coding synonymous_variant LOW 246T>C Leu82Leu
M0122013 JFNKJNJH_00006 5547 3 Oral 0.43 protein_coding synonymous_variant LOW 264C>T Asn88Asn
M0122014 JFNKJNJH_00006 5793 6 Oral 0.86 protein_coding synonymous_variant LOW 510T>C Asp170Asp
M0122015 JFNKJNJH_00006 5898 3 Oral 0.43 protein_coding synonymous_variant LOW 615T>A Ser205Ser
M0122016 JFNKJNJH_00006 5985 6 Oral 0.86 protein_coding synonymous_variant LOW 702C>T Asn234Asn
M0122017 JFNKJNJH_00006 6202 3 Oral 0.43 protein_coding synonymous_variant LOW 919T>C Leu307Leu
M0122018 JFNKJNJH_00006 6210 5 Oral 0.71 protein_coding synonymous_variant LOW 927A>G Lys309Lys
M0122019 JFNKJNJH_00006 6219 5 Oral 0.71 protein_coding synonymous_variant LOW 936T>C Pro312Pro
M0122020 JFNKJNJH_00006 6234 3 Oral 0.43 protein_coding synonymous_variant LOW 951G>A Val317Val
M0122021 JFNKJNJH_00006 6243 4 Oral 0.57 protein_coding synonymous_variant LOW 960G>A Ala320Ala
M0122022 JFNKJNJH_00006 6244 4 Oral 0.57 protein_coding missense_variant MODERATE 961G>T Ala321Ser
M0122023 JFNKJNJH_00006 6279 4 Oral 0.57 protein_coding synonymous_variant LOW 996T>C Leu332Leu
M0122024 JFNKJNJH_00006 6291 6 Oral 0.86 protein_coding synonymous_variant LOW 1008G>A Gly336Gly
M0122025 JFNKJNJH_00006 6297 4 Oral 0.57 protein_coding synonymous_variant LOW 1014T>A Ala338Ala
M0122026 JFNKJNJH_00006 6300 4 Oral 0.57 protein_coding synonymous_variant LOW 1017G>A Glu339Glu
M0122027 JFNKJNJH_00006 6306 6 Oral 0.86 protein_coding synonymous_variant LOW 1023T>C Phe341Phe
M0122028 JFNKJNJH_00006 6327 4 Oral 0.57 protein_coding synonymous_variant LOW 1044G>A Lys348Lys
M0122029 JFNKJNJH_00006 6333 4 Oral 0.57 protein_coding synonymous_variant LOW 1050C>T Asn350Asn
M0122030 JFNKJNJH_00006 6378 5 Oral 0.71 protein_coding synonymous_variant LOW 1095C>T Ile365Ile
M0122031 JFNKJNJH_00006 6382 4 Oral 0.57 protein_coding missense_variant MODERATE 1099C>A Gln367Lys
M0122032 JFNKJNJH_00006 6384 4 Oral 0.57 protein_coding missense_variant MODERATE 1101G>C Gln367His
M0122033 JFNKJNJH_00006 6396 4 Oral 0.57 protein_coding synonymous_variant LOW 1113C>T Asp371Asp
M0122034 JFNKJNJH_00006 6421 4 Oral 0.57 protein_coding missense_variant MODERATE 1138A>G Ile380Val
M0122035 JFNKJNJH_00006 6429 6 Oral 0.86 protein_coding synonymous_variant LOW 1146C>A Gly382Gly
M0122036 JFNKJNJH_00006 6456 5 Oral 0.71 protein_coding synonymous_variant LOW 1173C>T Leu391Leu
M0122037 JFNKJNJH_00006 6459 5 Oral 0.71 protein_coding synonymous_variant LOW 1176T>A Ile392Ile
M0122038 JFNKJNJH_00006 6474 5 Oral 0.71 protein_coding synonymous_variant LOW 1191C>G Ala397Ala
M0122039 JFNKJNJH_00006 6502 5 Oral 0.71 protein_coding missense_variant MODERATE 1219T>A Cys407Ser
M0122040 JFNKJNJH_00006 6517 4 Oral 0.57 protein_coding missense_variant MODERATE 1234C>T His412Tyr
M0122041 JFNKJNJH_00006 6552 7 Oral 1.00 protein_coding synonymous_variant LOW 1269T>C Ala423Ala
M0122042 JFNKJNJH_00006 6609 3 Oral 0.43 protein_coding synonymous_variant LOW 1326C>T Asn442Asn
M0122043 JFNKJNJH_00006 6729 6 Oral 0.86 protein_coding synonymous_variant LOW 1446A>T Gly482Gly
M0122044 JFNKJNJH_00007 6972 3 Oral 0.43 protein_coding missense_variant MODERATE 10A>C Lys4Gln
M0122045 JFNKJNJH_00007 7058 4 Oral 0.57 protein_coding synonymous_variant LOW 96T>A Leu32Leu
M0122046 JFNKJNJH_00007 7064 5 Oral 0.71 protein_coding synonymous_variant LOW 102A>G Lys34Lys
M0122047 JFNKJNJH_00007 7242 4 Oral 0.57 protein_coding missense_variant MODERATE 280G>A Ala94Thr
M0122048 JFNKJNJH_00007 7248 4 Oral 0.57 protein_coding missense_variant MODERATE 286C>G Leu96Val
M0122049 JFNKJNJH_00007 7256 5 Oral 0.71 protein_coding synonymous_variant LOW 294A>G Val98Val
M0122050 JFNKJNJH_00007 7271 6 Oral 0.86 protein_coding missense_variant MODERATE 309G>C Glu103Asp
M0122051 JFNKJNJH_00007 7474 6 Oral 0.86 protein_coding missense_variant MODERATE 512A>C Asn171Thr
M0122052 JFNKJNJH_00003 7506 6 Oral 0.86 protein_coding upstream_gene_variant MODIFIER -3827C>T None
M0122053 JFNKJNJH_00003 7624 4 Oral 0.57 protein_coding upstream_gene_variant MODIFIER -3945T>C None
M0122054 JFNKJNJH_00008 7726 5 Oral 0.71 protein_coding synonymous_variant LOW 27C>T Ser9Ser
M0122055 JFNKJNJH_00008 7813 3 Oral 0.43 protein_coding synonymous_variant LOW 114C>T Arg38Arg
M0122056 JFNKJNJH_00008 8035 3 Oral 0.43 protein_coding missense_variant MODERATE 336T>A Asp112Glu
M0122057 JFNKJNJH_00008 8119 4 Oral 0.57 protein_coding synonymous_variant LOW 420A>G Leu140Leu
M0122058 JFNKJNJH_00008 8143 3 Oral 0.43 protein_coding synonymous_variant LOW 444T>C Leu148Leu
M0122059 JFNKJNJH_00008 8164 5 Oral 0.71 protein_coding synonymous_variant LOW 465T>A Gly155Gly
M0122060 JFNKJNJH_00008 8299 6 Oral 0.86 protein_coding synonymous_variant LOW 600A>T Ala200Ala
M0122061 JFNKJNJH_00008 8440 6 Oral 0.86 protein_coding synonymous_variant LOW 741C>T Gly247Gly
M0122062 JFNKJNJH_00008 8490 4 Oral 0.57 protein_coding missense_variant MODERATE 791A>T Tyr264Phe
M0122063 JFNKJNJH_00008 8539 4 Oral 0.57 protein_coding synonymous_variant LOW 840A>T Ser280Ser
M0122064 JFNKJNJH_00008 8602 6 Oral 0.86 protein_coding synonymous_variant LOW 903A>G Ala301Ala
M0122065 JFNKJNJH_00008 8629 6 Oral 0.86 protein_coding synonymous_variant LOW 930A>G Gln310Gln
M0122066 JFNKJNJH_00008 8815 6 Oral 0.86 protein_coding synonymous_variant LOW 1116T>C Tyr372Tyr
M0122067 JFNKJNJH_00008 8893 4 Oral 0.57 protein_coding synonymous_variant LOW 1194A>C Val398Val
M0122068 JFNKJNJH_00008 8935 5 Oral 0.71 protein_coding synonymous_variant LOW 1236A>T Ile412Ile
M0122069 JFNKJNJH_00004 8980 6 Oral 0.86 protein_coding upstream_gene_variant MODIFIER -4717T>A None
M0122070 JFNKJNJH_00009 9145 6 Oral 0.86 protein_coding synonymous_variant LOW 78G>A Gln26Gln
M0122071 JFNKJNJH_00009 9160 6 Oral 0.86 protein_coding synonymous_variant LOW 93C>T Asn31Asn
M0122072 JFNKJNJH_00009 9227 6 Oral 0.86 protein_coding missense_variant MODERATE 160A>G Thr54Ala
M0122073 JFNKJNJH_00009 9277 5 Oral 0.71 protein_coding synonymous_variant LOW 210A>G Leu70Leu
M0122074 JFNKJNJH_00009 9280 6 Oral 0.86 protein_coding synonymous_variant LOW 213A>G Gln71Gln
M0122075 JFNKJNJH_00009 9520 5 Oral 0.71 protein_coding synonymous_variant LOW 453G>A Thr151Thr
M0122076 JFNKJNJH_00009 9604 5 Oral 0.71 protein_coding synonymous_variant LOW 537T>C Ser179Ser
M0122077 JFNKJNJH_00009 9628 3 Oral 0.43 protein_coding synonymous_variant LOW 561A>G Ala187Ala
M0122078 JFNKJNJH_00009 9634 5 Oral 0.71 protein_coding synonymous_variant LOW 567C>T Leu189Leu
M0122079 JFNKJNJH_00009 9640 5 Oral 0.71 protein_coding synonymous_variant LOW 573T>C Phe191Phe
M0122080 JFNKJNJH_00009 9775 3 Oral 0.43 protein_coding synonymous_variant LOW 708C>T Phe236Phe
M0122081 JFNKJNJH_00009 9793 3 Oral 0.43 protein_coding synonymous_variant LOW 726A>C Ala242Ala
M0122082 JFNKJNJH_00010 10616 3 Oral 0.43 protein_coding synonymous_variant LOW 525A>G Ala175Ala
M0122083 JFNKJNJH_00010 10760 4 Oral 0.57 protein_coding synonymous_variant LOW 669G>A Val223Val
M0122084 JFNKJNJH_00011 11150 3 Oral 0.43 protein_coding synonymous_variant LOW 294T>C Asp98Asp
M0122085 JFNKJNJH_00011 11246 5 Oral 0.71 protein_coding synonymous_variant LOW 390A>C Ala130Ala
M0122086 JFNKJNJH_00012 11338 3 Oral 0.43 protein_coding upstream_gene_variant MODIFIER -214A>G None
M0122087 JFNKJNJH_00012 11497 5 Oral 0.71 protein_coding upstream_gene_variant MODIFIER -55T>C None
M0122088 JFNKJNJH_00012 11842 3 Oral 0.43 protein_coding synonymous_variant LOW 291C>T Asn97Asn
M0122089 JFNKJNJH_00012 11989 4 Oral 0.57 protein_coding synonymous_variant LOW 438C>A Val146Val
M0122090 JFNKJNJH_00012 12037 4 Oral 0.57 protein_coding synonymous_variant LOW 486G>A Glu162Glu
M0122091 JFNKJNJH_00012 12208 5 Oral 0.71 protein_coding synonymous_variant LOW 657G>A Ala219Ala
M0122092 JFNKJNJH_00012 12226 5 Oral 0.71 protein_coding synonymous_variant LOW 675A>C Thr225Thr
M0122093 JFNKJNJH_00012 12235 3 Oral 0.43 protein_coding synonymous_variant LOW 684T>C Leu228Leu
M0122094 JFNKJNJH_00012 12250 5 Oral 0.71 protein_coding synonymous_variant LOW 699T>C Asp233Asp
M0122095 JFNKJNJH_00012 12355 5 Oral 0.71 protein_coding synonymous_variant LOW 804C>T Asp268Asp
M0122096 JFNKJNJH_00012 12406 5 Oral 0.71 protein_coding synonymous_variant LOW 855T>C Asp285Asp
M0122097 JFNKJNJH_00012 12415 5 Oral 0.71 protein_coding synonymous_variant LOW 864T>A Ile288Ile
M0122098 JFNKJNJH_00012 12448 5 Oral 0.71 protein_coding synonymous_variant LOW 897C>T Val299Val
M0122099 JFNKJNJH_00012 12574 5 Oral 0.71 protein_coding synonymous_variant LOW 1023T>C Asp341Asp
M0122100 JFNKJNJH_00012 12661 4 Oral 0.57 protein_coding synonymous_variant LOW 1110C>T Phe370Phe
M0122101 JFNKJNJH_00012 12682 3 Oral 0.43 protein_coding synonymous_variant LOW 1131A>G Val377Val
M0122102 JFNKJNJH_00012 12721 5 Oral 0.71 protein_coding synonymous_variant LOW 1170C>T Gly390Gly
M0122103 JFNKJNJH_00012 12769 5 Oral 0.71 protein_coding synonymous_variant LOW 1218T>C Val406Val
M0122104 JFNKJNJH_00012 12772 3 Oral 0.43 protein_coding synonymous_variant LOW 1221T>C Ile407Ile
M0122105 JFNKJNJH_00008 12910 4 Oral 0.57 protein_coding downstream_gene_variant MODIFIER *3954T>C None
M0122106 JFNKJNJH_00008 12916 4 Oral 0.57 protein_coding downstream_gene_variant MODIFIER *3960A>G None
M0122107 JFNKJNJH_00005 4653 3 Oral 0.43 protein_coding synonymous_variant LOW 267G>A Glu89Glu
M0122108 JFNKJNJH_00006 5806 5 Oral 0.71 protein_coding synonymous_variant LOW 523T>C Leu175Leu
M0122109 JFNKJNJH_00006 6003 5 Oral 0.71 protein_coding synonymous_variant LOW 720G>A Gln240Gln
M0122110 JFNKJNJH_00006 6135 3 Oral 0.43 protein_coding synonymous_variant LOW 852C>T Ser284Ser
M0122111 JFNKJNJH_00006 6867 3 Oral 0.43 protein_coding synonymous_variant LOW 1584C>T Leu528Leu
M0122112 JFNKJNJH_00007 7001 3 Oral 0.43 protein_coding synonymous_variant LOW 39C>T Leu13Leu
M0122113 JFNKJNJH_00007 7115 3 Oral 0.43 protein_coding synonymous_variant LOW 153A>G Lys51Lys
M0122114 JFNKJNJH_00003 7535 4 Oral 0.57 protein_coding upstream_gene_variant MODIFIER -3856G>A None
M0122115 JFNKJNJH_00003 7659 4 Oral 0.57 protein_coding upstream_gene_variant MODIFIER -3980A>G None
M0122116 JFNKJNJH_00003 7684 4 Oral 0.57 protein_coding upstream_gene_variant MODIFIER -4005G>A None
M0122117 JFNKJNJH_00008 7933 3 Oral 0.43 protein_coding synonymous_variant LOW 234T>C Thr78Thr
M0122118 JFNKJNJH_00008 8239 5 Oral 0.71 protein_coding synonymous_variant LOW 540G>A Gln180Gln
M0122119 JFNKJNJH_00008 8242 4 Oral 0.57 protein_coding synonymous_variant LOW 543T>C Arg181Arg
M0122120 JFNKJNJH_00008 8245 5 Oral 0.71 protein_coding synonymous_variant LOW 546A>T Ile182Ile
M0122121 JFNKJNJH_00009 9460 3 Oral 0.43 protein_coding synonymous_variant LOW 393C>T Gly131Gly
M0122122 JFNKJNJH_00009 9484 3 Oral 0.43 protein_coding synonymous_variant LOW 417A>T Ser139Ser
M0122123 JFNKJNJH_00010 10175 3 Oral 0.43 protein_coding synonymous_variant LOW 84G>A Val28Val
M0122124 JFNKJNJH_00008 12856 4 Oral 0.57 protein_coding downstream_gene_variant MODIFIER *3900T>C None
M0122125 JFNKJNJH_00005 4717 3 Oral 0.43 protein_coding missense_variant MODERATE 331T>A Ser111Thr
M0122126 JFNKJNJH_00005 4807 3 Oral 0.43 protein_coding missense_variant MODERATE 421A>G Lys141Glu
M0122127 JFNKJNJH_00005 4830 3 Oral 0.43 protein_coding synonymous_variant LOW 444C>T Ala148Ala
M0122128 JFNKJNJH_00006 6699 3 Oral 0.43 protein_coding synonymous_variant LOW 1416A>G Glu472Glu
M0122129 JFNKJNJH_00003 7539 3 Oral 0.43 protein_coding upstream_gene_variant MODIFIER -3860A>G None
M0122130 JFNKJNJH_00003 7573 3 Oral 0.43 protein_coding upstream_gene_variant MODIFIER -3894G>A None
M0122131 JFNKJNJH_00003 7574 3 Oral 0.43 protein_coding upstream_gene_variant MODIFIER -3895C>T None
M0122132 JFNKJNJH_00003 7575 3 Oral 0.43 protein_coding upstream_gene_variant MODIFIER -3896G>A None
M0122133 JFNKJNJH_00001 172 3 Oral 0.43 protein_coding synonymous_variant LOW 78G>A Val26Val
M0122134 JFNKJNJH_00002 651 3 Oral 0.43 protein_coding synonymous_variant LOW 45C>T Phe15Phe
M0122135 JFNKJNJH_00002 1362 3 Oral 0.43 protein_coding synonymous_variant LOW 756T>C Asn252Asn
M0122136 JFNKJNJH_00002 1980 3 Oral 0.43 protein_coding synonymous_variant LOW 1374T>C Asn458Asn
M0122137 JFNKJNJH_00002 2211 3 Oral 0.43 protein_coding synonymous_variant LOW 1605C>T Leu535Leu
M0122138 JFNKJNJH_00002 2922 3 Oral 0.43 protein_coding synonymous_variant LOW 2316C>T Ser772Ser
M0122139 JFNKJNJH_00003 3662 3 Oral 0.43 protein_coding synonymous_variant LOW 18T>A Ile6Ile
M0122140 JFNKJNJH_00008 8175 3 Oral 0.43 protein_coding missense_variant MODERATE 476G>T Arg159Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term