Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2402
  Reference Plasmid   1111525849768046_bin.37__k141_18025
  Reference Plasmid Size   5212
  Reference Plasmid GC Content   0.35
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0122553 ANAJHFBD_00003 3619 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -88A>G None
M0122554 ANAJHFBD_00003 3627 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -96A>C None
M0122555 ANAJHFBD_00003 3651 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -120G>A None
M0122556 ANAJHFBD_00003 3664 5 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -133G>A None
M0122557 ANAJHFBD_00003 3708 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -177A>C None
M0122558 ANAJHFBD_00003 3726 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -195A>T None
M0122559 ANAJHFBD_00004 3785 3 Oral 0.30 protein_coding synonymous_variant LOW 534G>A Leu178Leu
M0122560 ANAJHFBD_00004 3818 6 Oral 0.60 protein_coding synonymous_variant LOW 501C>T His167His
M0122561 ANAJHFBD_00004 3839 5 Oral 0.50 protein_coding synonymous_variant LOW 480C>T Cys160Cys
M0122562 ANAJHFBD_00004 3917 4 Oral 0.40 protein_coding synonymous_variant LOW 402T>C Ala134Ala
M0122563 ANAJHFBD_00004 3968 6 Oral 0.60 protein_coding synonymous_variant LOW 351C>T Phe117Phe
M0122564 ANAJHFBD_00004 4037 6 Oral 0.60 protein_coding synonymous_variant LOW 282A>G Ala94Ala
M0122565 ANAJHFBD_00004 4043 6 Oral 0.60 protein_coding synonymous_variant LOW 276C>T Asp92Asp
M0122566 ANAJHFBD_00004 4103 6 Oral 0.60 protein_coding synonymous_variant LOW 216C>T Val72Val
M0122567 ANAJHFBD_00004 4292 4 Oral 0.40 protein_coding synonymous_variant LOW 27T>C Asn9Asn
M0122568 ANAJHFBD_00003 4328 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -797A>G None
M0122569 ANAJHFBD_00003 4333 5 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -802T>A None
M0122570 ANAJHFBD_00003 4334 5 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -803A>T None
M0122571 ANAJHFBD_00003 4377 5 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -846A>T None
M0122572 ANAJHFBD_00005 4392 5 Oral 0.50 protein_coding missense_variant MODERATE 810G>T Met270Ile
M0122573 ANAJHFBD_00005 4407 5 Oral 0.50 protein_coding synonymous_variant LOW 795C>T Asn265Asn
M0122574 ANAJHFBD_00005 4608 4 Oral 0.40 protein_coding synonymous_variant LOW 594A>T Ala198Ala
M0122575 ANAJHFBD_00005 4665 3 Oral 0.30 protein_coding synonymous_variant LOW 537G>A Val179Val
M0122576 ANAJHFBD_00005 4677 3 Oral 0.30 protein_coding missense_variant MODERATE 525A>G Ile175Met
M0122577 ANAJHFBD_00005 4679 3 Oral 0.30 protein_coding missense_variant MODERATE 523A>G Ile175Val
M0122578 ANAJHFBD_00005 4722 3 Oral 0.30 protein_coding synonymous_variant LOW 480T>C Phe160Phe
M0122579 ANAJHFBD_00005 4731 3 Oral 0.30 protein_coding synonymous_variant LOW 471C>A Pro157Pro
M0122580 ANAJHFBD_00005 4740 3 Oral 0.30 protein_coding synonymous_variant LOW 462G>A Gln154Gln
M0122581 ANAJHFBD_00005 4801 6 Oral 0.60 protein_coding missense_variant MODERATE 401T>C Val134Ala
M0122582 ANAJHFBD_00005 4944 4 Oral 0.40 protein_coding synonymous_variant LOW 258T>C Thr86Thr
M0122583 ANAJHFBD_00005 5163 5 Oral 0.50 protein_coding synonymous_variant LOW 39A>G Leu13Leu
M0122584 ANAJHFBD_00001 124 5 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -733A>T None
M0122585 ANAJHFBD_00001 301 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -556A>G None
M0122586 ANAJHFBD_00001 307 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -550T>C None
M0122587 ANAJHFBD_00001 447 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -410T>C None
M0122588 ANAJHFBD_00001 472 5 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -385C>A None
M0122589 ANAJHFBD_00001 853 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -4C>A None
M0122590 ANAJHFBD_00001 892 6 Oral 0.60 protein_coding synonymous_variant LOW 36C>T Ile12Ile
M0122591 ANAJHFBD_00001 898 4 Oral 0.40 protein_coding synonymous_variant LOW 42G>A Thr14Thr
M0122592 ANAJHFBD_00001 914 5 Oral 0.50 protein_coding missense_variant MODERATE 58A>G Ile20Val
M0122593 ANAJHFBD_00001 916 4 Oral 0.40 protein_coding missense_variant MODERATE 60A>G Ile20Met
M0122594 ANAJHFBD_00001 922 4 Oral 0.40 protein_coding synonymous_variant LOW 66T>C His22His
M0122595 ANAJHFBD_00001 1060 3 Oral 0.30 protein_coding synonymous_variant LOW 204A>G Ala68Ala
M0122596 ANAJHFBD_00001 1147 5 Oral 0.50 protein_coding synonymous_variant LOW 291T>C Asp97Asp
M0122597 ANAJHFBD_00001 1150 5 Oral 0.50 protein_coding synonymous_variant LOW 294A>G Glu98Glu
M0122598 ANAJHFBD_00001 1170 5 Oral 0.50 protein_coding missense_variant MODERATE 314G>A Gly105Asp
M0122599 ANAJHFBD_00002 1274 3 Oral 0.30 protein_coding synonymous_variant LOW 60A>C Ile20Ile
M0122600 ANAJHFBD_00002 1280 4 Oral 0.40 protein_coding synonymous_variant LOW 66T>C Asp22Asp
M0122601 ANAJHFBD_00002 1310 3 Oral 0.30 protein_coding synonymous_variant LOW 96G>A Ser32Ser
M0122602 ANAJHFBD_00002 1520 3 Oral 0.30 protein_coding synonymous_variant LOW 306T>C Val102Val
M0122603 ANAJHFBD_00002 1559 5 Oral 0.50 protein_coding synonymous_variant LOW 345G>A Glu115Glu
M0122604 ANAJHFBD_00002 1634 4 Oral 0.40 protein_coding synonymous_variant LOW 420A>G Gln140Gln
M0122605 ANAJHFBD_00003 1729 3 Oral 0.30 protein_coding synonymous_variant LOW 1803A>T Ser601Ser
M0122606 ANAJHFBD_00003 1924 4 Oral 0.40 protein_coding synonymous_variant LOW 1608A>T Arg536Arg
M0122607 ANAJHFBD_00003 1927 3 Oral 0.30 protein_coding synonymous_variant LOW 1605G>A Gln535Gln
M0122608 ANAJHFBD_00003 1960 5 Oral 0.50 protein_coding synonymous_variant LOW 1572T>C Ile524Ile
M0122609 ANAJHFBD_00003 1990 5 Oral 0.50 protein_coding synonymous_variant LOW 1542A>T Val514Val
M0122610 ANAJHFBD_00003 2002 5 Oral 0.50 protein_coding synonymous_variant LOW 1530T>C Asp510Asp
M0122611 ANAJHFBD_00003 2026 5 Oral 0.50 protein_coding synonymous_variant LOW 1506T>C Asp502Asp
M0122612 ANAJHFBD_00003 2089 4 Oral 0.40 protein_coding synonymous_variant LOW 1443C>T Asp481Asp
M0122613 ANAJHFBD_00003 2143 5 Oral 0.50 protein_coding synonymous_variant LOW 1389T>C His463His
M0122614 ANAJHFBD_00003 2248 4 Oral 0.40 protein_coding synonymous_variant LOW 1284G>A Pro428Pro
M0122615 ANAJHFBD_00003 2392 3 Oral 0.30 protein_coding synonymous_variant LOW 1140T>C Asn380Asn
M0122616 ANAJHFBD_00003 2467 4 Oral 0.40 protein_coding synonymous_variant LOW 1065C>T Gly355Gly
M0122617 ANAJHFBD_00003 2488 4 Oral 0.40 protein_coding synonymous_variant LOW 1044T>C Thr348Thr
M0122618 ANAJHFBD_00003 2497 4 Oral 0.40 protein_coding synonymous_variant LOW 1035G>C Val345Val
M0122619 ANAJHFBD_00003 2503 4 Oral 0.40 protein_coding synonymous_variant LOW 1029A>C Thr343Thr
M0122620 ANAJHFBD_00003 2509 4 Oral 0.40 protein_coding synonymous_variant LOW 1023C>T Val341Val
M0122621 ANAJHFBD_00003 2512 4 Oral 0.40 protein_coding synonymous_variant LOW 1020T>G Thr340Thr
M0122622 ANAJHFBD_00003 2518 4 Oral 0.40 protein_coding synonymous_variant LOW 1014A>G Ala338Ala
M0122623 ANAJHFBD_00003 2521 4 Oral 0.40 protein_coding synonymous_variant LOW 1011C>A Val337Val
M0122624 ANAJHFBD_00003 2575 4 Oral 0.40 protein_coding synonymous_variant LOW 957T>G Val319Val
M0122625 ANAJHFBD_00003 2593 4 Oral 0.40 protein_coding synonymous_variant LOW 939A>T Thr313Thr
M0122626 ANAJHFBD_00003 2617 4 Oral 0.40 protein_coding synonymous_variant LOW 915A>C Ile305Ile
M0122627 ANAJHFBD_00003 2623 4 Oral 0.40 protein_coding missense_variant MODERATE 909T>A Asn303Lys
M0122628 ANAJHFBD_00003 2624 4 Oral 0.40 protein_coding missense_variant MODERATE 908A>G Asn303Ser
M0122629 ANAJHFBD_00003 2635 4 Oral 0.40 protein_coding synonymous_variant LOW 897G>A Gly299Gly
M0122630 ANAJHFBD_00003 2653 4 Oral 0.40 protein_coding synonymous_variant LOW 879T>C Phe293Phe
M0122631 ANAJHFBD_00003 2677 5 Oral 0.50 protein_coding synonymous_variant LOW 855T>A Ile285Ile
M0122632 ANAJHFBD_00003 2686 5 Oral 0.50 protein_coding synonymous_variant LOW 846C>T Leu282Leu
M0122633 ANAJHFBD_00003 2689 4 Oral 0.40 protein_coding synonymous_variant LOW 843A>G Leu281Leu
M0122634 ANAJHFBD_00003 3010 4 Oral 0.40 protein_coding synonymous_variant LOW 522T>G Ser174Ser
M0122635 ANAJHFBD_00003 3016 6 Oral 0.60 protein_coding synonymous_variant LOW 516C>A Gly172Gly
M0122636 ANAJHFBD_00003 3049 6 Oral 0.60 protein_coding synonymous_variant LOW 483T>C Asp161Asp
M0122637 ANAJHFBD_00003 3238 3 Oral 0.30 protein_coding synonymous_variant LOW 294G>A Ser98Ser
M0122638 ANAJHFBD_00003 3256 6 Oral 0.60 protein_coding synonymous_variant LOW 276A>T Val92Val
M0122639 ANAJHFBD_00003 3461 6 Oral 0.60 protein_coding missense_variant MODERATE 71A>G His24Arg
M0122640 ANAJHFBD_00003 3462 3 Oral 0.30 protein_coding missense_variant MODERATE 70C>T His24Tyr
M0122641 ANAJHFBD_00003 3523 5 Oral 0.50 protein_coding synonymous_variant LOW 9G>A Ser3Ser
M0122642 ANAJHFBD_00003 3563 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -32G>A None
M0122643 ANAJHFBD_00004 3821 3 Oral 0.30 protein_coding synonymous_variant LOW 498G>A Glu166Glu
M0122644 ANAJHFBD_00004 3992 4 Oral 0.40 protein_coding synonymous_variant LOW 327C>T Ala109Ala
M0122645 ANAJHFBD_00004 4120 5 Oral 0.50 protein_coding synonymous_variant LOW 199A>C Arg67Arg
M0122646 ANAJHFBD_00004 4139 3 Oral 0.30 protein_coding synonymous_variant LOW 180C>T Asp60Asp
M0122647 ANAJHFBD_00004 4142 4 Oral 0.40 protein_coding synonymous_variant LOW 177T>A Val59Val
M0122648 ANAJHFBD_00004 4175 4 Oral 0.40 protein_coding synonymous_variant LOW 144G>A Lys48Lys
M0122649 ANAJHFBD_00004 4178 4 Oral 0.40 protein_coding synonymous_variant LOW 141G>A Lys47Lys
M0122650 ANAJHFBD_00004 4214 4 Oral 0.40 protein_coding synonymous_variant LOW 105C>T Thr35Thr
M0122651 ANAJHFBD_00005 5022 4 Oral 0.40 protein_coding synonymous_variant LOW 180G>A Ala60Ala
M0122652 ANAJHFBD_00005 4602 3 Oral 0.30 protein_coding missense_variant MODERATE 600A>T Glu200Asp
M0122653 ANAJHFBD_00005 4624 3 Oral 0.30 protein_coding missense_variant MODERATE 578G>A Cys193Tyr
M0122654 ANAJHFBD_00003 3039 3 Oral 0.30 protein_coding missense_variant MODERATE 493C>A Leu165Met
M0122655 ANAJHFBD_00003 3127 3 Oral 0.30 protein_coding synonymous_variant LOW 405G>T Gly135Gly
M0122656 ANAJHFBD_00003 3133 3 Oral 0.30 protein_coding synonymous_variant LOW 399T>C Phe133Phe
M0122657 ANAJHFBD_00003 3136 3 Oral 0.30 protein_coding synonymous_variant LOW 396T>C Gly132Gly
M0122658 ANAJHFBD_00003 3154 3 Oral 0.30 protein_coding synonymous_variant LOW 378C>T Ala126Ala
M0122659 ANAJHFBD_00003 3163 3 Oral 0.30 protein_coding synonymous_variant LOW 369A>G Ser123Ser
M0122660 ANAJHFBD_00003 3172 3 Oral 0.30 protein_coding synonymous_variant LOW 360T>C Cys120Cys
M0122661 ANAJHFBD_00003 3219 3 Oral 0.30 protein_coding synonymous_variant LOW 313T>C Leu105Leu
M0122662 ANAJHFBD_00003 3247 3 Oral 0.30 protein_coding synonymous_variant LOW 285T>C Asp95Asp
M0122663 ANAJHFBD_00001 151 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -706C>T None
M0122664 ANAJHFBD_00001 268 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -589C>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term