Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2409
  Reference Plasmid   1111525849768046_bin.37__k141_188781
  Reference Plasmid Size   13883
  Reference Plasmid GC Content   0.38
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0122998 GKOOPNEP_00006 7035 7 Oral 0.47 protein_coding synonymous_variant LOW 234T>C Val78Val
M0122999 GKOOPNEP_00006 7065 5 Oral 0.33 protein_coding missense_variant MODERATE 264G>T Leu88Phe
M0123000 GKOOPNEP_00006 7131 7 Oral 0.47 protein_coding synonymous_variant LOW 330T>C Cys110Cys
M0123001 GKOOPNEP_00006 7144 8 Oral 0.53 protein_coding missense_variant MODERATE 343T>G Tyr115Asp
M0123002 GKOOPNEP_00006 7285 5 Oral 0.33 protein_coding missense_variant MODERATE 484A>G Ile162Val
M0123003 GKOOPNEP_00006 7344 3 Oral 0.20 protein_coding synonymous_variant LOW 543C>T Phe181Phe
M0123004 GKOOPNEP_00006 7395 7 Oral 0.47 protein_coding missense_variant MODERATE 594A>C Arg198Ser
M0123005 GKOOPNEP_00006 7405 7 Oral 0.47 protein_coding missense_variant MODERATE 604A>G Lys202Glu
M0123006 GKOOPNEP_00006 7406 7 Oral 0.47 protein_coding missense_variant MODERATE 605A>C Lys202Thr
M0123007 GKOOPNEP_00006 7521 7 Oral 0.47 protein_coding synonymous_variant LOW 720A>T Val240Val
M0123008 GKOOPNEP_00006 7783 6 Oral 0.40 protein_coding missense_variant MODERATE 982A>C Thr328Pro
M0123009 GKOOPNEP_00006 7839 3 Oral 0.20 protein_coding synonymous_variant LOW 1038T>C Gly346Gly
M0123010 GKOOPNEP_00006 7851 3 Oral 0.20 protein_coding synonymous_variant LOW 1050A>G Leu350Leu
M0123011 GKOOPNEP_00006 7893 6 Oral 0.40 protein_coding synonymous_variant LOW 1092T>C Phe364Phe
M0123012 GKOOPNEP_00006 7998 7 Oral 0.47 protein_coding missense_variant MODERATE 1197T>G Phe399Leu
M0123013 GKOOPNEP_00006 8010 7 Oral 0.47 protein_coding synonymous_variant LOW 1209T>C Ile403Ile
M0123014 GKOOPNEP_00006 8132 8 Oral 0.53 protein_coding missense_variant MODERATE 1331T>C Val444Ala
M0123015 GKOOPNEP_00006 8152 5 Oral 0.33 protein_coding missense_variant MODERATE 1351T>A Leu451Met
M0123016 GKOOPNEP_00006 8196 4 Oral 0.27 protein_coding missense_variant MODERATE 1395A>C Glu465Asp
M0123017 GKOOPNEP_00006 8481 4 Oral 0.27 protein_coding synonymous_variant LOW 1680G>A Lys560Lys
M0123018 GKOOPNEP_00006 8574 4 Oral 0.27 protein_coding synonymous_variant LOW 1773C>T Asn591Asn
M0123019 GKOOPNEP_00006 8673 7 Oral 0.47 protein_coding synonymous_variant LOW 1872T>A Ile624Ile
M0123020 GKOOPNEP_00006 8677 5 Oral 0.33 protein_coding missense_variant MODERATE 1876T>G Ser626Ala
M0123021 GKOOPNEP_00006 8709 5 Oral 0.33 protein_coding synonymous_variant LOW 1908T>C Tyr636Tyr
M0123022 GKOOPNEP_00007 9233 4 Oral 0.27 protein_coding missense_variant MODERATE 265T>G Ser89Ala
M0123023 GKOOPNEP_00007 9313 5 Oral 0.33 protein_coding synonymous_variant LOW 345T>C His115His
M0123024 GKOOPNEP_00007 9382 5 Oral 0.33 protein_coding synonymous_variant LOW 414T>C Thr138Thr
M0123025 GKOOPNEP_00007 9511 4 Oral 0.27 protein_coding synonymous_variant LOW 543A>T Pro181Pro
M0123026 GKOOPNEP_00007 9541 6 Oral 0.40 protein_coding synonymous_variant LOW 573G>A Ser191Ser
M0123027 GKOOPNEP_00007 9661 9 Oral 0.60 protein_coding synonymous_variant LOW 693C>T Val231Val
M0123028 GKOOPNEP_00008 9879 9 Oral 0.60 protein_coding synonymous_variant LOW 204G>A Glu68Glu
M0123029 GKOOPNEP_00008 10044 3 Oral 0.20 protein_coding synonymous_variant LOW 369G>A Gln123Gln
M0123030 GKOOPNEP_00003 10397 6 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -4705A>G None
M0123031 GKOOPNEP_00003 10399 8 Oral 0.53 protein_coding upstream_gene_variant MODIFIER -4707T>G None
M0123032 GKOOPNEP_00003 10405 8 Oral 0.53 protein_coding upstream_gene_variant MODIFIER -4713T>C None
M0123033 GKOOPNEP_00003 10423 8 Oral 0.53 protein_coding upstream_gene_variant MODIFIER -4731C>T None
M0123034 GKOOPNEP_00009 10531 8 Oral 0.53 protein_coding synonymous_variant LOW 54G>A Gly18Gly
M0123035 GKOOPNEP_00009 10555 5 Oral 0.33 protein_coding synonymous_variant LOW 78T>C Leu26Leu
M0123036 GKOOPNEP_00009 10624 6 Oral 0.40 protein_coding synonymous_variant LOW 147A>G Gly49Gly
M0123037 GKOOPNEP_00009 10687 8 Oral 0.53 protein_coding synonymous_variant LOW 210G>A Lys70Lys
M0123038 GKOOPNEP_00009 10778 7 Oral 0.47 protein_coding synonymous_variant LOW 301C>T Leu101Leu
M0123039 GKOOPNEP_00009 10786 7 Oral 0.47 protein_coding synonymous_variant LOW 309A>T Thr103Thr
M0123040 GKOOPNEP_00009 10882 3 Oral 0.20 protein_coding synonymous_variant LOW 405C>T Ala135Ala
M0123041 GKOOPNEP_00009 11047 4 Oral 0.27 protein_coding synonymous_variant LOW 570T>C Tyr190Tyr
M0123042 GKOOPNEP_00009 11068 8 Oral 0.53 protein_coding synonymous_variant LOW 591T>C Ser197Ser
M0123043 GKOOPNEP_00009 11098 9 Oral 0.60 protein_coding synonymous_variant LOW 621A>G Glu207Glu
M0123044 GKOOPNEP_00002 4109 7 Oral 0.47 protein_coding synonymous_variant LOW 135G>A Glu45Glu
M0123045 GKOOPNEP_00002 4148 7 Oral 0.47 protein_coding missense_variant MODERATE 96A>C Glu32Asp
M0123046 GKOOPNEP_00002 4172 3 Oral 0.20 protein_coding synonymous_variant LOW 72G>A Gln24Gln
M0123047 GKOOPNEP_00002 4214 3 Oral 0.20 protein_coding synonymous_variant LOW 30T>C Asp10Asp
M0123048 GKOOPNEP_00001 4256 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -1268C>T None
M0123049 GKOOPNEP_00001 4257 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -1269A>G None
M0123050 GKOOPNEP_00001 4261 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -1273C>T None
M0123051 GKOOPNEP_00003 4268 5 Oral 0.33 protein_coding missense_variant MODERATE 1425A>T Gln475His
M0123052 GKOOPNEP_00003 4269 5 Oral 0.33 protein_coding missense_variant MODERATE 1424A>C Gln475Pro
M0123053 GKOOPNEP_00003 4270 5 Oral 0.33 protein_coding stop_gained HIGH 1423C>T Gln475*
M0123054 GKOOPNEP_00003 4313 3 Oral 0.20 protein_coding synonymous_variant LOW 1380G>A Leu460Leu
M0123055 GKOOPNEP_00003 4328 7 Oral 0.47 protein_coding synonymous_variant LOW 1365T>C Asn455Asn
M0123056 GKOOPNEP_00003 4565 5 Oral 0.33 protein_coding synonymous_variant LOW 1128A>G Thr376Thr
M0123057 GKOOPNEP_00003 4751 5 Oral 0.33 protein_coding synonymous_variant LOW 942C>T Ile314Ile
M0123058 GKOOPNEP_00003 4760 5 Oral 0.33 protein_coding synonymous_variant LOW 933C>T His311His
M0123059 GKOOPNEP_00003 4778 6 Oral 0.40 protein_coding synonymous_variant LOW 915C>T Gly305Gly
M0123060 GKOOPNEP_00003 4883 4 Oral 0.27 protein_coding synonymous_variant LOW 810T>A Val270Val
M0123061 GKOOPNEP_00003 4979 3 Oral 0.20 protein_coding synonymous_variant LOW 714G>A Leu238Leu
M0123062 GKOOPNEP_00003 5003 3 Oral 0.20 protein_coding synonymous_variant LOW 690C>T Phe230Phe
M0123063 GKOOPNEP_00003 5101 7 Oral 0.47 protein_coding synonymous_variant LOW 592T>C Leu198Leu
M0123064 GKOOPNEP_00003 5102 5 Oral 0.33 protein_coding synonymous_variant LOW 591A>G Ala197Ala
M0123065 GKOOPNEP_00003 5156 4 Oral 0.27 protein_coding synonymous_variant LOW 537T>C Cys179Cys
M0123066 GKOOPNEP_00003 5159 5 Oral 0.33 protein_coding synonymous_variant LOW 534C>T Arg178Arg
M0123067 GKOOPNEP_00003 5162 3 Oral 0.20 protein_coding synonymous_variant LOW 531G>A Leu177Leu
M0123068 GKOOPNEP_00003 5201 5 Oral 0.33 protein_coding missense_variant MODERATE 492A>C Glu164Asp
M0123069 GKOOPNEP_00003 5207 5 Oral 0.33 protein_coding synonymous_variant LOW 486T>C Pro162Pro
M0123070 GKOOPNEP_00003 5417 4 Oral 0.27 protein_coding synonymous_variant LOW 276T>A Ile92Ile
M0123071 GKOOPNEP_00003 5441 6 Oral 0.40 protein_coding synonymous_variant LOW 252C>T Thr84Thr
M0123072 GKOOPNEP_00003 5504 4 Oral 0.27 protein_coding synonymous_variant LOW 189C>T Ala63Ala
M0123073 GKOOPNEP_00003 5528 3 Oral 0.20 protein_coding synonymous_variant LOW 165A>T Val55Val
M0123074 GKOOPNEP_00005 6500 3 Oral 0.20 protein_coding synonymous_variant LOW 234A>G Leu78Leu
M0123075 GKOOPNEP_00005 6678 7 Oral 0.47 protein_coding synonymous_variant LOW 412C>T Leu138Leu
M0123076 GKOOPNEP_00006 6960 7 Oral 0.47 protein_coding synonymous_variant LOW 159C>T Ser53Ser
M0123077 GKOOPNEP_00006 6966 7 Oral 0.47 protein_coding synonymous_variant LOW 165A>G Leu55Leu
M0123078 GKOOPNEP_00006 7032 5 Oral 0.33 protein_coding synonymous_variant LOW 231A>T Ala77Ala
M0123079 GKOOPNEP_00006 7260 7 Oral 0.47 protein_coding synonymous_variant LOW 459C>T Asn153Asn
M0123080 GKOOPNEP_00006 7267 4 Oral 0.27 protein_coding missense_variant MODERATE 466C>A Leu156Ile
M0123081 GKOOPNEP_00006 7329 4 Oral 0.27 protein_coding synonymous_variant LOW 528A>G Leu176Leu
M0123082 GKOOPNEP_00006 7332 6 Oral 0.40 protein_coding synonymous_variant LOW 531C>T Pro177Pro
M0123083 GKOOPNEP_00001 62 3 Oral 0.20 protein_coding downstream_gene_variant MODIFIER *1445T>C None
M0123084 GKOOPNEP_00001 152 4 Oral 0.27 protein_coding downstream_gene_variant MODIFIER *1355A>G None
M0123085 GKOOPNEP_00001 176 4 Oral 0.27 protein_coding downstream_gene_variant MODIFIER *1331C>T None
M0123086 GKOOPNEP_00001 185 4 Oral 0.27 protein_coding downstream_gene_variant MODIFIER *1322G>T None
M0123087 GKOOPNEP_00001 467 6 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *1040T>C None
M0123088 GKOOPNEP_00001 620 6 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *887T>C None
M0123089 GKOOPNEP_00001 644 3 Oral 0.20 protein_coding downstream_gene_variant MODIFIER *863G>T None
M0123090 GKOOPNEP_00001 749 6 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *758G>A None
M0123091 GKOOPNEP_00004 868 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4998T>A None
M0123092 GKOOPNEP_00004 923 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -4943T>C None
M0123093 GKOOPNEP_00004 976 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -4890T>C None
M0123094 GKOOPNEP_00004 1058 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -4808A>G None
M0123095 GKOOPNEP_00004 1172 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4694C>A None
M0123096 GKOOPNEP_00004 1373 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4493T>G None
M0123097 GKOOPNEP_00004 1406 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4460T>C None
M0123098 GKOOPNEP_00004 1424 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -4442A>G None
M0123099 GKOOPNEP_00004 1439 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -4427A>T None
M0123100 GKOOPNEP_00004 1500 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -4366T>C None
M0123101 GKOOPNEP_00001 1651 3 Oral 0.20 protein_coding synonymous_variant LOW 1338C>T Asn446Asn
M0123102 GKOOPNEP_00001 1933 3 Oral 0.20 protein_coding synonymous_variant LOW 1056C>T Asn352Asn
M0123103 GKOOPNEP_00001 2119 3 Oral 0.20 protein_coding synonymous_variant LOW 870T>C Asn290Asn
M0123104 GKOOPNEP_00001 2188 3 Oral 0.20 protein_coding synonymous_variant LOW 801C>T Arg267Arg
M0123105 GKOOPNEP_00001 2209 4 Oral 0.27 protein_coding synonymous_variant LOW 780C>T Gly260Gly
M0123106 GKOOPNEP_00001 2245 3 Oral 0.20 protein_coding synonymous_variant LOW 744C>T Ser248Ser
M0123107 GKOOPNEP_00001 2299 3 Oral 0.20 protein_coding synonymous_variant LOW 690T>C Gly230Gly
M0123108 GKOOPNEP_00001 2449 3 Oral 0.20 protein_coding synonymous_variant LOW 540T>C Arg180Arg
M0123109 GKOOPNEP_00001 2473 4 Oral 0.27 protein_coding synonymous_variant LOW 516T>C Asp172Asp
M0123110 GKOOPNEP_00001 2482 3 Oral 0.20 protein_coding synonymous_variant LOW 507C>T Asp169Asp
M0123111 GKOOPNEP_00001 2551 3 Oral 0.20 protein_coding synonymous_variant LOW 438G>A Lys146Lys
M0123112 GKOOPNEP_00001 2587 4 Oral 0.27 protein_coding synonymous_variant LOW 402C>T Arg134Arg
M0123113 GKOOPNEP_00001 2629 4 Oral 0.27 protein_coding synonymous_variant LOW 360A>G Val120Val
M0123114 GKOOPNEP_00001 2641 4 Oral 0.27 protein_coding synonymous_variant LOW 348A>G Ser116Ser
M0123115 GKOOPNEP_00001 2689 4 Oral 0.27 protein_coding synonymous_variant LOW 300C>T Asp100Asp
M0123116 GKOOPNEP_00001 2848 4 Oral 0.27 protein_coding synonymous_variant LOW 141T>C Arg47Arg
M0123117 GKOOPNEP_00001 2864 3 Oral 0.20 protein_coding missense_variant MODERATE 125C>T Ser42Phe
M0123118 GKOOPNEP_00001 2870 4 Oral 0.27 protein_coding missense_variant MODERATE 119G>A Ser40Asn
M0123119 GKOOPNEP_00001 2895 3 Oral 0.20 protein_coding missense_variant MODERATE 94C>A Pro32Thr
M0123120 GKOOPNEP_00001 2959 3 Oral 0.20 protein_coding synonymous_variant LOW 30T>A Ala10Ala
M0123121 GKOOPNEP_00002 3596 4 Oral 0.27 protein_coding synonymous_variant LOW 648A>G Leu216Leu
M0123122 GKOOPNEP_00002 3628 3 Oral 0.20 protein_coding missense_variant MODERATE 616A>G Asn206Asp
M0123123 GKOOPNEP_00002 3634 3 Oral 0.20 protein_coding missense_variant MODERATE 610A>G Asn204Asp
M0123124 GKOOPNEP_00002 3793 4 Oral 0.27 protein_coding synonymous_variant LOW 451C>T Leu151Leu
M0123125 GKOOPNEP_00002 3796 5 Oral 0.33 protein_coding synonymous_variant LOW 448T>C Leu150Leu
M0123126 GKOOPNEP_00002 3806 3 Oral 0.20 protein_coding synonymous_variant LOW 438C>A Ile146Ile
M0123127 GKOOPNEP_00002 3836 4 Oral 0.27 protein_coding synonymous_variant LOW 408C>T Ala136Ala
M0123128 GKOOPNEP_00002 3890 6 Oral 0.40 protein_coding synonymous_variant LOW 354G>A Thr118Thr
M0123129 GKOOPNEP_00002 3914 4 Oral 0.27 protein_coding synonymous_variant LOW 330T>C Pro110Pro
M0123130 GKOOPNEP_00002 3917 4 Oral 0.27 protein_coding synonymous_variant LOW 327T>C Leu109Leu
M0123131 GKOOPNEP_00002 3943 3 Oral 0.20 protein_coding synonymous_variant LOW 301T>C Leu101Leu
M0123132 GKOOPNEP_00002 3944 6 Oral 0.40 protein_coding synonymous_variant LOW 300T>G Val100Val
M0123133 GKOOPNEP_00002 3950 3 Oral 0.20 protein_coding synonymous_variant LOW 294A>T Arg98Arg
M0123134 GKOOPNEP_00002 3995 5 Oral 0.33 protein_coding synonymous_variant LOW 249T>C Gly83Gly
M0123135 GKOOPNEP_00002 4013 5 Oral 0.33 protein_coding synonymous_variant LOW 231A>G Thr77Thr
M0123136 GKOOPNEP_00002 4058 3 Oral 0.20 protein_coding synonymous_variant LOW 186C>T Arg62Arg
M0123137 GKOOPNEP_00002 4061 4 Oral 0.27 protein_coding synonymous_variant LOW 183G>A Glu61Glu
M0123138 GKOOPNEP_00002 4106 3 Oral 0.20 protein_coding synonymous_variant LOW 138A>T Val46Val
M0123139 GKOOPNEP_00003 4376 3 Oral 0.20 protein_coding synonymous_variant LOW 1317C>T Thr439Thr
M0123140 GKOOPNEP_00003 4385 3 Oral 0.20 protein_coding synonymous_variant LOW 1308G>T Ala436Ala
M0123141 GKOOPNEP_00003 4508 3 Oral 0.20 protein_coding synonymous_variant LOW 1185C>T Asp395Asp
M0123142 GKOOPNEP_00003 4514 3 Oral 0.20 protein_coding synonymous_variant LOW 1179T>C Phe393Phe
M0123143 GKOOPNEP_00003 4652 3 Oral 0.20 protein_coding synonymous_variant LOW 1041A>T Pro347Pro
M0123144 GKOOPNEP_00003 4718 3 Oral 0.20 protein_coding synonymous_variant LOW 975T>C Arg325Arg
M0123145 GKOOPNEP_00003 4723 3 Oral 0.20 protein_coding synonymous_variant LOW 970C>A Arg324Arg
M0123146 GKOOPNEP_00003 5279 5 Oral 0.33 protein_coding synonymous_variant LOW 414C>T Ser138Ser
M0123147 GKOOPNEP_00003 5288 5 Oral 0.33 protein_coding synonymous_variant LOW 405C>T Cys135Cys
M0123148 GKOOPNEP_00003 5474 3 Oral 0.20 protein_coding synonymous_variant LOW 219C>T Gly73Gly
M0123149 GKOOPNEP_00001 5761 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -2773T>C None
M0123150 GKOOPNEP_00001 5859 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -2871T>C None
M0123151 GKOOPNEP_00006 7076 4 Oral 0.27 protein_coding missense_variant MODERATE 275T>C Leu92Ser
M0123152 GKOOPNEP_00006 7087 4 Oral 0.27 protein_coding missense_variant MODERATE 286T>G Phe96Val
M0123153 GKOOPNEP_00006 7311 3 Oral 0.20 protein_coding synonymous_variant LOW 510C>T Val170Val
M0123154 GKOOPNEP_00006 7327 3 Oral 0.20 protein_coding synonymous_variant LOW 526C>T Leu176Leu
M0123155 GKOOPNEP_00006 7374 3 Oral 0.20 protein_coding synonymous_variant LOW 573A>G Lys191Lys
M0123156 GKOOPNEP_00006 7401 3 Oral 0.20 protein_coding synonymous_variant LOW 600A>G Ala200Ala
M0123157 GKOOPNEP_00006 7407 6 Oral 0.40 protein_coding synonymous_variant LOW 606G>A Lys202Lys
M0123158 GKOOPNEP_00006 7614 5 Oral 0.33 protein_coding synonymous_variant LOW 813T>C Tyr271Tyr
M0123159 GKOOPNEP_00006 7713 5 Oral 0.33 protein_coding synonymous_variant LOW 912T>G Pro304Pro
M0123160 GKOOPNEP_00003 10272 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4580C>G None
M0123161 GKOOPNEP_00003 10275 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4583A>G None
M0123162 GKOOPNEP_00003 10311 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4619T>C None
M0123163 GKOOPNEP_00006 7416 3 Oral 0.20 protein_coding synonymous_variant LOW 615T>C Tyr205Tyr
M0123164 GKOOPNEP_00003 10301 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4609A>T None
M0123165 GKOOPNEP_00009 10603 3 Oral 0.20 protein_coding synonymous_variant LOW 126A>G Gln42Gln
M0123166 GKOOPNEP_00009 10981 7 Oral 0.47 protein_coding synonymous_variant LOW 504T>C Asp168Asp
M0123167 GKOOPNEP_00009 11200 7 Oral 0.47 protein_coding synonymous_variant LOW 723C>T His241His
M0123168 GKOOPNEP_00011 11736 8 Oral 0.53 protein_coding missense_variant MODERATE 31A>G Thr11Ala
M0123169 GKOOPNEP_00011 11921 5 Oral 0.33 protein_coding synonymous_variant LOW 216A>G Leu72Leu
M0123170 GKOOPNEP_00011 12314 7 Oral 0.47 protein_coding synonymous_variant LOW 609T>C Asn203Asn
M0123171 GKOOPNEP_00011 12374 3 Oral 0.20 protein_coding synonymous_variant LOW 669A>T Ala223Ala
M0123172 GKOOPNEP_00011 12623 6 Oral 0.40 protein_coding synonymous_variant LOW 918G>A Gln306Gln
M0123173 GKOOPNEP_00011 12684 6 Oral 0.40 protein_coding missense_variant MODERATE 979G>A Val327Ile
M0123174 GKOOPNEP_00011 12707 3 Oral 0.20 protein_coding synonymous_variant LOW 1002C>T Asp334Asp
M0123175 GKOOPNEP_00011 12737 7 Oral 0.47 protein_coding synonymous_variant LOW 1032A>G Leu344Leu
M0123176 GKOOPNEP_00011 12771 7 Oral 0.47 protein_coding missense_variant MODERATE 1066T>A Ser356Thr
M0123177 GKOOPNEP_00011 12821 7 Oral 0.47 protein_coding synonymous_variant LOW 1116C>T Tyr372Tyr
M0123178 GKOOPNEP_00011 12896 7 Oral 0.47 protein_coding synonymous_variant LOW 1191A>T Gly397Gly
M0123179 GKOOPNEP_00010 12961 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -1551G>A None
M0123180 GKOOPNEP_00010 12982 7 Oral 0.47 protein_coding upstream_gene_variant MODIFIER -1572T>C None
M0123181 GKOOPNEP_00010 12998 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -1588C>T None
M0123182 GKOOPNEP_00010 13136 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -1726C>T None
M0123183 GKOOPNEP_00010 13165 6 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -1755A>G None
M0123184 GKOOPNEP_00010 13184 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -1774C>T None
M0123185 GKOOPNEP_00010 13219 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -1809C>T None
M0123186 GKOOPNEP_00010 13426 6 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -2016T>C None
M0123187 GKOOPNEP_00010 13441 6 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -2031G>A None
M0123188 GKOOPNEP_00010 13580 7 Oral 0.47 protein_coding upstream_gene_variant MODIFIER -2170T>G None
M0123189 GKOOPNEP_00010 13603 7 Oral 0.47 protein_coding upstream_gene_variant MODIFIER -2193G>A None
M0123190 GKOOPNEP_00010 13627 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2217G>A None
M0123191 GKOOPNEP_00010 13645 7 Oral 0.47 protein_coding upstream_gene_variant MODIFIER -2235A>G None
M0123192 GKOOPNEP_00010 13744 7 Oral 0.47 protein_coding upstream_gene_variant MODIFIER -2334A>G None
M0123193 GKOOPNEP_00010 13756 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2346A>G None
M0123194 GKOOPNEP_00010 13813 6 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -2403G>C None
M0123195 GKOOPNEP_00010 13816 6 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -2406G>A None
M0123196 GKOOPNEP_00007 9512 4 Oral 0.27 protein_coding missense_variant MODERATE 544G>A Ala182Thr
M0123197 GKOOPNEP_00008 10164 3 Oral 0.20 protein_coding synonymous_variant LOW 489G>A Lys163Lys
M0123198 GKOOPNEP_00008 10203 3 Oral 0.20 protein_coding synonymous_variant LOW 528A>G Val176Val
M0123199 GKOOPNEP_00009 10609 4 Oral 0.27 protein_coding synonymous_variant LOW 132T>C Asp44Asp
M0123200 GKOOPNEP_00001 428 4 Oral 0.27 protein_coding downstream_gene_variant MODIFIER *1079T>A None
M0123201 GKOOPNEP_00001 431 3 Oral 0.20 protein_coding downstream_gene_variant MODIFIER *1076A>T None
M0123202 GKOOPNEP_00001 434 4 Oral 0.27 protein_coding downstream_gene_variant MODIFIER *1073T>C None
M0123203 GKOOPNEP_00001 479 4 Oral 0.27 protein_coding downstream_gene_variant MODIFIER *1028T>C None
M0123204 GKOOPNEP_00001 503 4 Oral 0.27 protein_coding downstream_gene_variant MODIFIER *1004T>C None
M0123205 GKOOPNEP_00002 3902 3 Oral 0.20 protein_coding synonymous_variant LOW 342T>C Ser114Ser
M0123206 GKOOPNEP_00002 4055 3 Oral 0.20 protein_coding synonymous_variant LOW 189C>T His63His
M0123207 GKOOPNEP_00006 7599 3 Oral 0.20 protein_coding synonymous_variant LOW 798A>G Leu266Leu
M0123208 GKOOPNEP_00006 7653 3 Oral 0.20 protein_coding synonymous_variant LOW 852C>T Asp284Asp
M0123209 GKOOPNEP_00006 7665 3 Oral 0.20 protein_coding synonymous_variant LOW 864T>C Phe288Phe
M0123210 GKOOPNEP_00006 7695 3 Oral 0.20 protein_coding synonymous_variant LOW 894C>T Ala298Ala
M0123211 GKOOPNEP_00006 7929 3 Oral 0.20 protein_coding synonymous_variant LOW 1128G>A Glu376Glu
M0123212 GKOOPNEP_00008 9897 3 Oral 0.20 protein_coding synonymous_variant LOW 222T>A Ile74Ile
M0123213 GKOOPNEP_00008 10173 3 Oral 0.20 protein_coding synonymous_variant LOW 498T>A Ala166Ala
M0123214 GKOOPNEP_00010 11481 6 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -71G>A None
M0123215 GKOOPNEP_00010 13195 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -1785A>T None
M0123216 GKOOPNEP_00010 13534 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -2124G>A None
M0123217 GKOOPNEP_00010 13710 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2300G>A None
M0123218 GKOOPNEP_00001 83 3 Oral 0.20 protein_coding downstream_gene_variant MODIFIER *1424T>C None
M0123219 GKOOPNEP_00001 566 3 Oral 0.20 protein_coding downstream_gene_variant MODIFIER *941G>A None
M0123220 GKOOPNEP_00001 2317 3 Oral 0.20 protein_coding synonymous_variant LOW 672A>G Glu224Glu
M0123221 GKOOPNEP_00002 3908 3 Oral 0.20 protein_coding synonymous_variant LOW 336C>A Val112Val
M0123222 GKOOPNEP_00002 3911 3 Oral 0.20 protein_coding synonymous_variant LOW 333T>A Ser111Ser
M0123223 GKOOPNEP_00008 9969 3 Oral 0.20 protein_coding synonymous_variant LOW 294A>G Ala98Ala
M0123224 GKOOPNEP_00009 10548 3 Oral 0.20 protein_coding missense_variant MODERATE 71A>G Lys24Arg
M0123225 GKOOPNEP_00010 11531 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -121T>C None
M0123226 GKOOPNEP_00011 12287 5 Oral 0.33 protein_coding synonymous_variant LOW 582A>G Gln194Gln
M0123227 GKOOPNEP_00011 12487 4 Oral 0.27 protein_coding missense_variant MODERATE 782G>C Ser261Thr
M0123228 GKOOPNEP_00011 12551 5 Oral 0.33 protein_coding synonymous_variant LOW 846C>T Gly282Gly
M0123229 GKOOPNEP_00010 12948 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -1538G>A None
M0123230 GKOOPNEP_00010 13495 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2085G>A None
M0123231 GKOOPNEP_00010 13537 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -2127G>A None
M0123232 GKOOPNEP_00011 11765 4 Oral 0.27 protein_coding synonymous_variant LOW 60A>G Gly20Gly
M0123233 GKOOPNEP_00011 12242 4 Oral 0.27 protein_coding synonymous_variant LOW 537C>T Ser179Ser
M0123234 GKOOPNEP_00011 12583 3 Oral 0.20 protein_coding missense_variant MODERATE 878C>G Thr293Arg
M0123235 GKOOPNEP_00010 13648 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -2238G>A None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
GKOOPNEP_00001 EFC71364.1|GH125 91.7 0 1 493 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term