Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2419
  Reference Plasmid   1111525849768046_bin.37__k141_202981
  Reference Plasmid Size   7435
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0124149 ODIDHHGN_00001 38 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -137T>G None
M0124150 ODIDHHGN_00001 522 3 Oral 0.38 protein_coding synonymous_variant LOW 348T>C Phe116Phe
M0124151 ODIDHHGN_00001 556 3 Oral 0.38 protein_coding missense_variant MODERATE 382A>G Ile128Val
M0124152 ODIDHHGN_00001 586 3 Oral 0.38 protein_coding missense_variant MODERATE 412T>A Ser138Thr
M0124153 ODIDHHGN_00001 587 3 Oral 0.38 protein_coding missense_variant MODERATE 413C>T Ser138Leu
M0124154 ODIDHHGN_00001 588 3 Oral 0.38 protein_coding synonymous_variant LOW 414G>T Ser138Ser
M0124155 ODIDHHGN_00001 591 3 Oral 0.38 protein_coding synonymous_variant LOW 417T>C Tyr139Tyr
M0124156 ODIDHHGN_00002 1103 4 Oral 0.50 protein_coding synonymous_variant LOW 210T>C Pro70Pro
M0124157 ODIDHHGN_00002 1142 4 Oral 0.50 protein_coding synonymous_variant LOW 249A>T Thr83Thr
M0124158 ODIDHHGN_00002 1160 4 Oral 0.50 protein_coding synonymous_variant LOW 267T>C Tyr89Tyr
M0124159 ODIDHHGN_00002 1163 4 Oral 0.50 protein_coding synonymous_variant LOW 270C>T Asp90Asp
M0124160 ODIDHHGN_00002 1233 4 Oral 0.50 protein_coding missense_variant MODERATE 340A>G Met114Val
M0124161 ODIDHHGN_00002 1283 4 Oral 0.50 protein_coding synonymous_variant LOW 390G>A Lys130Lys
M0124162 ODIDHHGN_00002 1292 4 Oral 0.50 protein_coding synonymous_variant LOW 399T>A Val133Val
M0124163 ODIDHHGN_00002 1403 3 Oral 0.38 protein_coding synonymous_variant LOW 510T>C Asp170Asp
M0124164 ODIDHHGN_00002 1487 3 Oral 0.38 protein_coding synonymous_variant LOW 594G>A Leu198Leu
M0124165 ODIDHHGN_00002 1532 3 Oral 0.38 protein_coding synonymous_variant LOW 639G>A Pro213Pro
M0124166 ODIDHHGN_00002 1783 3 Oral 0.38 protein_coding missense_variant MODERATE 890T>C Ile297Thr
M0124167 ODIDHHGN_00003 1894 4 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -166A>C None
M0124168 ODIDHHGN_00003 1917 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -143T>A None
M0124169 ODIDHHGN_00003 1919 4 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -141A>G None
M0124170 ODIDHHGN_00003 2179 4 Oral 0.50 protein_coding missense_variant MODERATE 120G>C Arg40Ser
M0124171 ODIDHHGN_00003 2425 4 Oral 0.50 protein_coding synonymous_variant LOW 366C>A Gly122Gly
M0124172 ODIDHHGN_00003 3023 3 Oral 0.38 protein_coding missense_variant MODERATE 964C>T Leu322Phe
M0124173 ODIDHHGN_00003 3025 3 Oral 0.38 protein_coding synonymous_variant LOW 966C>A Leu322Leu
M0124174 ODIDHHGN_00003 3100 3 Oral 0.38 protein_coding synonymous_variant LOW 1041C>T Leu347Leu
M0124175 ODIDHHGN_00004 3648 3 Oral 0.38 protein_coding synonymous_variant LOW 180C>T Asp60Asp
M0124176 ODIDHHGN_00004 3726 4 Oral 0.50 protein_coding synonymous_variant LOW 258C>T Ile86Ile
M0124177 ODIDHHGN_00004 3888 3 Oral 0.38 protein_coding synonymous_variant LOW 420T>C Cys140Cys
M0124178 ODIDHHGN_00004 4023 4 Oral 0.50 protein_coding synonymous_variant LOW 555T>A Pro185Pro
M0124179 ODIDHHGN_00004 4170 4 Oral 0.50 protein_coding synonymous_variant LOW 702T>C Asn234Asn
M0124180 ODIDHHGN_00004 4173 4 Oral 0.50 protein_coding synonymous_variant LOW 705A>T Thr235Thr
M0124181 ODIDHHGN_00004 4203 3 Oral 0.38 protein_coding synonymous_variant LOW 735T>C Ala245Ala
M0124182 ODIDHHGN_00004 4221 4 Oral 0.50 protein_coding synonymous_variant LOW 753T>C Asn251Asn
M0124183 ODIDHHGN_00004 4311 4 Oral 0.50 protein_coding synonymous_variant LOW 843G>A Val281Val
M0124184 ODIDHHGN_00004 4374 4 Oral 0.50 protein_coding synonymous_variant LOW 906T>A Thr302Thr
M0124185 ODIDHHGN_00005 4597 3 Oral 0.38 protein_coding missense_variant MODERATE 247T>A Trp83Arg
M0124186 ODIDHHGN_00005 4629 3 Oral 0.38 protein_coding stop_gained HIGH 215C>A Ser72*
M0124187 ODIDHHGN_00005 4632 4 Oral 0.50 protein_coding missense_variant MODERATE 212G>T Gly71Val
M0124188 ODIDHHGN_00005 4635 4 Oral 0.50 protein_coding missense_variant MODERATE 209T>C Met70Thr
M0124189 ODIDHHGN_00005 4636 4 Oral 0.50 protein_coding missense_variant MODERATE 208A>G Met70Val
M0124190 ODIDHHGN_00005 4637 3 Oral 0.38 protein_coding synonymous_variant LOW 207A>G Ser69Ser
M0124191 ODIDHHGN_00005 4663 3 Oral 0.38 protein_coding missense_variant MODERATE 181G>A Val61Ile
M0124192 ODIDHHGN_00005 4666 3 Oral 0.38 protein_coding missense_variant MODERATE 178A>T Thr60Ser
M0124193 ODIDHHGN_00005 4863 5 Oral 0.63 protein_coding upstream_gene_variant MODIFIER -20A>G None
M0124194 ODIDHHGN_00007 5564 4 Oral 0.50 protein_coding synonymous_variant LOW 405C>T Tyr135Tyr
M0124195 ODIDHHGN_00007 5618 5 Oral 0.63 protein_coding synonymous_variant LOW 351A>G Leu117Leu
M0124196 ODIDHHGN_00007 5762 3 Oral 0.38 protein_coding synonymous_variant LOW 207A>G Ala69Ala
M0124197 ODIDHHGN_00007 5816 4 Oral 0.50 protein_coding synonymous_variant LOW 153T>C Asp51Asp
M0124198 ODIDHHGN_00005 5971 4 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -1128T>C None
M0124199 ODIDHHGN_00008 6277 4 Oral 0.50 protein_coding synonymous_variant LOW 210A>G Lys70Lys
M0124200 ODIDHHGN_00008 6332 4 Oral 0.50 protein_coding missense_variant MODERATE 155T>C Val52Ala
M0124201 ODIDHHGN_00005 6507 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1664C>G None
M0124202 ODIDHHGN_00005 6544 4 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -1701T>G None
M0124203 ODIDHHGN_00005 6548 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1705T>C None
M0124204 ODIDHHGN_00005 6552 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1709A>G None
M0124205 ODIDHHGN_00005 6558 4 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -1715A>C None
M0124206 ODIDHHGN_00005 6561 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1718A>T None
M0124207 ODIDHHGN_00009 6632 4 Oral 0.50 protein_coding synonymous_variant LOW 747C>T Ala249Ala
M0124208 ODIDHHGN_00009 7031 4 Oral 0.50 protein_coding synonymous_variant LOW 348G>T Val116Val
M0124209 ODIDHHGN_00009 7109 4 Oral 0.50 protein_coding synonymous_variant LOW 270G>A Val90Val
M0124210 ODIDHHGN_00009 7115 3 Oral 0.38 protein_coding synonymous_variant LOW 264A>G Gly88Gly
M0124211 ODIDHHGN_00009 7124 3 Oral 0.38 protein_coding synonymous_variant LOW 255C>T Gly85Gly
M0124212 ODIDHHGN_00009 7127 3 Oral 0.38 protein_coding synonymous_variant LOW 252C>T Tyr84Tyr
M0124213 ODIDHHGN_00009 7148 4 Oral 0.50 protein_coding synonymous_variant LOW 231A>G Val77Val
M0124214 ODIDHHGN_00009 7154 3 Oral 0.38 protein_coding synonymous_variant LOW 225C>T Ile75Ile
M0124215 ODIDHHGN_00009 7168 4 Oral 0.50 protein_coding missense_variant MODERATE 211T>C Cys71Arg
M0124216 ODIDHHGN_00009 7280 3 Oral 0.38 protein_coding synonymous_variant LOW 99T>A Ala33Ala
M0124217 ODIDHHGN_00009 7298 4 Oral 0.50 protein_coding synonymous_variant LOW 81C>G Gly27Gly
M0124218 ODIDHHGN_00009 7307 4 Oral 0.50 protein_coding synonymous_variant LOW 72C>T Ala24Ala
M0124219 ODIDHHGN_00009 7337 4 Oral 0.50 protein_coding synonymous_variant LOW 42A>T Gly14Gly
M0124220 ODIDHHGN_00006 4974 3 Oral 0.38 protein_coding missense_variant MODERATE 440A>G Lys147Arg
M0124221 ODIDHHGN_00006 5012 3 Oral 0.38 protein_coding missense_variant MODERATE 402C>A Asp134Glu
M0124222 ODIDHHGN_00006 5069 3 Oral 0.38 protein_coding synonymous_variant LOW 345C>T Arg115Arg
M0124223 ODIDHHGN_00009 6818 3 Oral 0.38 protein_coding synonymous_variant LOW 561A>T Ala187Ala
M0124224 ODIDHHGN_00003 1892 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -168G>T None
M0124225 ODIDHHGN_00003 2203 3 Oral 0.38 protein_coding synonymous_variant LOW 144T>C Thr48Thr
M0124226 ODIDHHGN_00003 2344 3 Oral 0.38 protein_coding synonymous_variant LOW 285A>G Leu95Leu
M0124227 ODIDHHGN_00004 3372 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -97T>A None
M0124228 ODIDHHGN_00004 3375 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -94C>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
ODIDHHGN_00004 EFC70974.1|GH130 99.7 1.09e-254 1 324 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term