Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2423
  Reference Plasmid   1111525849768046_bin.37__k141_212527
  Reference Plasmid Size   14908
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0124522 HKFOCJLG_00001 441 3 Oral 0.21 protein_coding downstream_gene_variant MODIFIER *138T>C None
M0124523 HKFOCJLG_00001 478 4 Oral 0.29 protein_coding downstream_gene_variant MODIFIER *101A>T None
M0124524 HKFOCJLG_00001 479 4 Oral 0.29 protein_coding downstream_gene_variant MODIFIER *100C>T None
M0124525 HKFOCJLG_00001 485 4 Oral 0.29 protein_coding downstream_gene_variant MODIFIER *94C>T None
M0124526 HKFOCJLG_00001 501 4 Oral 0.29 protein_coding downstream_gene_variant MODIFIER *78A>G None
M0124527 HKFOCJLG_00001 506 4 Oral 0.29 protein_coding downstream_gene_variant MODIFIER *73T>A None
M0124528 HKFOCJLG_00001 565 5 Oral 0.36 protein_coding downstream_gene_variant MODIFIER *14A>T None
M0124529 HKFOCJLG_00001 588 5 Oral 0.36 protein_coding synonymous_variant LOW 3765A>G Val1255Val
M0124530 HKFOCJLG_00001 606 4 Oral 0.29 protein_coding synonymous_variant LOW 3747T>C Tyr1249Tyr
M0124531 HKFOCJLG_00001 672 4 Oral 0.29 protein_coding synonymous_variant LOW 3681C>T Thr1227Thr
M0124532 HKFOCJLG_00001 699 3 Oral 0.21 protein_coding synonymous_variant LOW 3654A>G Leu1218Leu
M0124533 HKFOCJLG_00001 701 4 Oral 0.29 protein_coding synonymous_variant LOW 3652C>T Leu1218Leu
M0124534 HKFOCJLG_00001 738 4 Oral 0.29 protein_coding synonymous_variant LOW 3615T>C Asn1205Asn
M0124535 HKFOCJLG_00001 741 4 Oral 0.29 protein_coding synonymous_variant LOW 3612C>T Leu1204Leu
M0124536 HKFOCJLG_00001 744 4 Oral 0.29 protein_coding synonymous_variant LOW 3609A>T Thr1203Thr
M0124537 HKFOCJLG_00001 747 5 Oral 0.36 protein_coding synonymous_variant LOW 3606C>T Tyr1202Tyr
M0124538 HKFOCJLG_00001 918 4 Oral 0.29 protein_coding synonymous_variant LOW 3435T>A Ala1145Ala
M0124539 HKFOCJLG_00001 951 5 Oral 0.36 protein_coding synonymous_variant LOW 3402T>C Thr1134Thr
M0124540 HKFOCJLG_00001 1047 4 Oral 0.29 protein_coding synonymous_variant LOW 3306T>C Gly1102Gly
M0124541 HKFOCJLG_00001 1353 4 Oral 0.29 protein_coding synonymous_variant LOW 3000C>T Phe1000Phe
M0124542 HKFOCJLG_00001 1476 3 Oral 0.21 protein_coding missense_variant MODERATE 2877G>T Glu959Asp
M0124543 HKFOCJLG_00001 1543 5 Oral 0.36 protein_coding missense_variant MODERATE 2810A>G Asp937Gly
M0124544 HKFOCJLG_00001 1544 4 Oral 0.29 protein_coding missense_variant MODERATE 2809G>A Asp937Asn
M0124545 HKFOCJLG_00001 1581 3 Oral 0.21 protein_coding synonymous_variant LOW 2772C>T Asn924Asn
M0124546 HKFOCJLG_00001 1614 5 Oral 0.36 protein_coding missense_variant MODERATE 2739T>G Asn913Lys
M0124547 HKFOCJLG_00001 1617 5 Oral 0.36 protein_coding synonymous_variant LOW 2736G>A Lys912Lys
M0124548 HKFOCJLG_00001 1618 5 Oral 0.36 protein_coding missense_variant MODERATE 2735A>C Lys912Thr
M0124549 HKFOCJLG_00001 1621 5 Oral 0.36 protein_coding missense_variant MODERATE 2732T>A Phe911Tyr
M0124550 HKFOCJLG_00001 1623 5 Oral 0.36 protein_coding missense_variant MODERATE 2730G>C Lys910Asn
M0124551 HKFOCJLG_00001 1641 5 Oral 0.36 protein_coding synonymous_variant LOW 2712T>C Arg904Arg
M0124552 HKFOCJLG_00001 1674 6 Oral 0.43 protein_coding synonymous_variant LOW 2679T>C His893His
M0124553 HKFOCJLG_00001 1701 3 Oral 0.21 protein_coding synonymous_variant LOW 2652A>G Lys884Lys
M0124554 HKFOCJLG_00001 1782 5 Oral 0.36 protein_coding synonymous_variant LOW 2571T>A Val857Val
M0124555 HKFOCJLG_00001 1837 3 Oral 0.21 protein_coding missense_variant MODERATE 2516G>A Arg839His
M0124556 HKFOCJLG_00001 1890 6 Oral 0.43 protein_coding synonymous_variant LOW 2463G>A Gly821Gly
M0124557 HKFOCJLG_00001 1907 3 Oral 0.21 protein_coding missense_variant MODERATE 2446G>A Ala816Thr
M0124558 HKFOCJLG_00001 1938 5 Oral 0.36 protein_coding synonymous_variant LOW 2415G>A Ala805Ala
M0124559 HKFOCJLG_00001 1941 5 Oral 0.36 protein_coding synonymous_variant LOW 2412A>T Ala804Ala
M0124560 HKFOCJLG_00001 1991 4 Oral 0.29 protein_coding missense_variant MODERATE 2362A>G Thr788Ala
M0124561 HKFOCJLG_00001 1995 5 Oral 0.36 protein_coding missense_variant MODERATE 2358C>A Asn786Lys
M0124562 HKFOCJLG_00001 1996 5 Oral 0.36 protein_coding missense_variant MODERATE 2357A>G Asn786Ser
M0124563 HKFOCJLG_00001 1997 5 Oral 0.36 protein_coding missense_variant MODERATE 2356A>G Asn786Asp
M0124564 HKFOCJLG_00001 2055 4 Oral 0.29 protein_coding synonymous_variant LOW 2298G>T Ala766Ala
M0124565 HKFOCJLG_00001 2057 3 Oral 0.21 protein_coding missense_variant MODERATE 2296G>T Ala766Ser
M0124566 HKFOCJLG_00001 2079 3 Oral 0.21 protein_coding synonymous_variant LOW 2274A>G Val758Val
M0124567 HKFOCJLG_00001 2184 6 Oral 0.43 protein_coding synonymous_variant LOW 2169C>T Arg723Arg
M0124568 HKFOCJLG_00001 2187 5 Oral 0.36 protein_coding synonymous_variant LOW 2166T>C Ser722Ser
M0124569 HKFOCJLG_00001 2436 5 Oral 0.36 protein_coding synonymous_variant LOW 1917T>C Asn639Asn
M0124570 HKFOCJLG_00001 2493 4 Oral 0.29 protein_coding synonymous_variant LOW 1860T>C Ile620Ile
M0124571 HKFOCJLG_00001 3918 6 Oral 0.43 protein_coding synonymous_variant LOW 435T>C Gly145Gly
M0124572 HKFOCJLG_00001 3945 5 Oral 0.36 protein_coding synonymous_variant LOW 408T>C Gly136Gly
M0124573 HKFOCJLG_00001 4059 5 Oral 0.36 protein_coding synonymous_variant LOW 294T>A Thr98Thr
M0124574 HKFOCJLG_00001 4111 3 Oral 0.21 protein_coding missense_variant MODERATE 242C>A Thr81Asn
M0124575 HKFOCJLG_00001 4114 3 Oral 0.21 protein_coding missense_variant MODERATE 239C>A Ala80Glu
M0124576 HKFOCJLG_00001 4156 5 Oral 0.36 protein_coding missense_variant MODERATE 197A>G Lys66Arg
M0124577 HKFOCJLG_00001 4292 6 Oral 0.43 protein_coding synonymous_variant LOW 61A>C Arg21Arg
M0124578 HKFOCJLG_00001 4358 5 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -6T>C None
M0124579 HKFOCJLG_00001 4456 5 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -104C>A None
M0124580 HKFOCJLG_00001 4458 5 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -106A>G None
M0124581 HKFOCJLG_00001 4459 5 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -107G>C None
M0124582 HKFOCJLG_00001 4460 5 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -108A>C None
M0124583 HKFOCJLG_00001 4461 5 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -109T>A None
M0124584 HKFOCJLG_00001 4475 3 Oral 0.21 protein_coding upstream_gene_variant MODIFIER -123C>A None
M0124585 HKFOCJLG_00001 4589 6 Oral 0.43 protein_coding upstream_gene_variant MODIFIER -237T>C None
M0124586 HKFOCJLG_00001 4590 6 Oral 0.43 protein_coding upstream_gene_variant MODIFIER -238C>G None
M0124587 HKFOCJLG_00002 4605 6 Oral 0.43 protein_coding synonymous_variant LOW 3738G>A Leu1246Leu
M0124588 HKFOCJLG_00002 4614 4 Oral 0.29 protein_coding synonymous_variant LOW 3729C>T Thr1243Thr
M0124589 HKFOCJLG_00002 4686 6 Oral 0.43 protein_coding synonymous_variant LOW 3657T>C Thr1219Thr
M0124590 HKFOCJLG_00002 4752 6 Oral 0.43 protein_coding synonymous_variant LOW 3591T>C Asn1197Asn
M0124591 HKFOCJLG_00002 4884 4 Oral 0.29 protein_coding synonymous_variant LOW 3459T>C Ala1153Ala
M0124592 HKFOCJLG_00002 4886 3 Oral 0.21 protein_coding missense_variant MODERATE 3457G>A Ala1153Thr
M0124593 HKFOCJLG_00002 4938 4 Oral 0.29 protein_coding synonymous_variant LOW 3405A>G Val1135Val
M0124594 HKFOCJLG_00002 4968 3 Oral 0.21 protein_coding synonymous_variant LOW 3375T>A Pro1125Pro
M0124595 HKFOCJLG_00002 4970 3 Oral 0.21 protein_coding missense_variant MODERATE 3373C>G Pro1125Ala
M0124596 HKFOCJLG_00002 4986 3 Oral 0.21 protein_coding synonymous_variant LOW 3357C>T Asn1119Asn
M0124597 HKFOCJLG_00002 5841 5 Oral 0.36 protein_coding synonymous_variant LOW 2502T>A Arg834Arg
M0124598 HKFOCJLG_00002 5842 5 Oral 0.36 protein_coding missense_variant MODERATE 2501G>A Arg834His
M0124599 HKFOCJLG_00002 5843 5 Oral 0.36 protein_coding missense_variant MODERATE 2500C>A Arg834Ser
M0124600 HKFOCJLG_00002 5844 5 Oral 0.36 protein_coding synonymous_variant LOW 2499C>A Gly833Gly
M0124601 HKFOCJLG_00002 5849 5 Oral 0.36 protein_coding missense_variant MODERATE 2494T>A Ser832Thr
M0124602 HKFOCJLG_00002 5850 5 Oral 0.36 protein_coding synonymous_variant LOW 2493T>A Gly831Gly
M0124603 HKFOCJLG_00002 5922 4 Oral 0.29 protein_coding synonymous_variant LOW 2421A>C Thr807Thr
M0124604 HKFOCJLG_00002 6105 5 Oral 0.36 protein_coding synonymous_variant LOW 2238A>G Lys746Lys
M0124605 HKFOCJLG_00002 6210 4 Oral 0.29 protein_coding synonymous_variant LOW 2133T>C Asn711Asn
M0124606 HKFOCJLG_00002 6276 5 Oral 0.36 protein_coding synonymous_variant LOW 2067T>A Ala689Ala
M0124607 HKFOCJLG_00002 6294 4 Oral 0.29 protein_coding synonymous_variant LOW 2049G>A Val683Val
M0124608 HKFOCJLG_00002 6381 3 Oral 0.21 protein_coding synonymous_variant LOW 1962C>T Gly654Gly
M0124609 HKFOCJLG_00002 6384 3 Oral 0.21 protein_coding synonymous_variant LOW 1959A>G Glu653Glu
M0124610 HKFOCJLG_00002 6555 4 Oral 0.29 protein_coding synonymous_variant LOW 1788A>G Lys596Lys
M0124611 HKFOCJLG_00002 6646 3 Oral 0.21 protein_coding missense_variant MODERATE 1697G>A Ser566Asn
M0124612 HKFOCJLG_00002 6656 4 Oral 0.29 protein_coding missense_variant MODERATE 1687G>A Val563Ile
M0124613 HKFOCJLG_00002 6687 4 Oral 0.29 protein_coding synonymous_variant LOW 1656T>C Thr552Thr
M0124614 HKFOCJLG_00002 6711 5 Oral 0.36 protein_coding synonymous_variant LOW 1632T>A Ala544Ala
M0124615 HKFOCJLG_00002 6746 3 Oral 0.21 protein_coding missense_variant MODERATE 1597C>A His533Asn
M0124616 HKFOCJLG_00002 6777 5 Oral 0.36 protein_coding synonymous_variant LOW 1566T>C Ser522Ser
M0124617 HKFOCJLG_00002 6837 3 Oral 0.21 protein_coding synonymous_variant LOW 1506G>A Leu502Leu
M0124618 HKFOCJLG_00002 6915 3 Oral 0.21 protein_coding synonymous_variant LOW 1428T>C Asp476Asp
M0124619 HKFOCJLG_00002 7461 3 Oral 0.21 protein_coding synonymous_variant LOW 882C>T Thr294Thr
M0124620 HKFOCJLG_00002 7527 3 Oral 0.21 protein_coding synonymous_variant LOW 816C>A Val272Val
M0124621 HKFOCJLG_00002 7528 3 Oral 0.21 protein_coding missense_variant MODERATE 815T>A Val272Asp
M0124622 HKFOCJLG_00002 7540 4 Oral 0.29 protein_coding missense_variant MODERATE 803A>C Asp268Ala
M0124623 HKFOCJLG_00002 7690 5 Oral 0.36 protein_coding missense_variant MODERATE 653A>C Asn218Thr
M0124624 HKFOCJLG_00002 7691 4 Oral 0.29 protein_coding missense_variant MODERATE 652A>T Asn218Tyr
M0124625 HKFOCJLG_00002 7695 3 Oral 0.21 protein_coding synonymous_variant LOW 648C>T Asp216Asp
M0124626 HKFOCJLG_00002 7725 3 Oral 0.21 protein_coding synonymous_variant LOW 618T>C Val206Val
M0124627 HKFOCJLG_00002 7764 6 Oral 0.43 protein_coding synonymous_variant LOW 579T>A Val193Val
M0124628 HKFOCJLG_00002 8334 5 Oral 0.36 protein_coding synonymous_variant LOW 9A>G Lys3Lys
M0124629 HKFOCJLG_00001 8375 4 Oral 0.29 protein_coding upstream_gene_variant MODIFIER -4023A>T None
M0124630 HKFOCJLG_00001 8380 5 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4028T>G None
M0124631 HKFOCJLG_00001 8382 4 Oral 0.29 protein_coding upstream_gene_variant MODIFIER -4030G>C None
M0124632 HKFOCJLG_00001 8425 6 Oral 0.43 protein_coding upstream_gene_variant MODIFIER -4073A>G None
M0124633 HKFOCJLG_00001 8539 5 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4187T>G None
M0124634 HKFOCJLG_00001 8564 7 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -4212A>G None
M0124635 HKFOCJLG_00001 8565 7 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -4213C>A None
M0124636 HKFOCJLG_00001 8596 8 Oral 0.57 protein_coding upstream_gene_variant MODIFIER -4244A>G None
M0124637 HKFOCJLG_00003 8682 8 Oral 0.57 protein_coding synonymous_variant LOW 2916C>A Ala972Ala
M0124638 HKFOCJLG_00003 8718 4 Oral 0.29 protein_coding synonymous_variant LOW 2880C>T Val960Val
M0124639 HKFOCJLG_00003 8745 3 Oral 0.21 protein_coding synonymous_variant LOW 2853T>C Ser951Ser
M0124640 HKFOCJLG_00003 9030 7 Oral 0.50 protein_coding synonymous_variant LOW 2568T>C Ile856Ile
M0124641 HKFOCJLG_00003 9051 7 Oral 0.50 protein_coding synonymous_variant LOW 2547A>T Ala849Ala
M0124642 HKFOCJLG_00003 9063 5 Oral 0.36 protein_coding synonymous_variant LOW 2535A>T Gly845Gly
M0124643 HKFOCJLG_00003 9107 5 Oral 0.36 protein_coding missense_variant MODERATE 2491G>A Val831Ile
M0124644 HKFOCJLG_00003 9132 5 Oral 0.36 protein_coding synonymous_variant LOW 2466T>A Val822Val
M0124645 HKFOCJLG_00003 9207 8 Oral 0.57 protein_coding synonymous_variant LOW 2391T>C Gly797Gly
M0124646 HKFOCJLG_00003 9450 3 Oral 0.21 protein_coding synonymous_variant LOW 2148C>T Arg716Arg
M0124647 HKFOCJLG_00003 9531 8 Oral 0.57 protein_coding synonymous_variant LOW 2067A>T Ala689Ala
M0124648 HKFOCJLG_00003 9546 3 Oral 0.21 protein_coding synonymous_variant LOW 2052A>C Val684Val
M0124649 HKFOCJLG_00003 9555 5 Oral 0.36 protein_coding synonymous_variant LOW 2043A>C Val681Val
M0124650 HKFOCJLG_00003 9557 5 Oral 0.36 protein_coding missense_variant MODERATE 2041G>T Val681Leu
M0124651 HKFOCJLG_00003 9630 3 Oral 0.21 protein_coding synonymous_variant LOW 1968A>G Thr656Thr
M0124652 HKFOCJLG_00003 9690 3 Oral 0.21 protein_coding synonymous_variant LOW 1908G>A Leu636Leu
M0124653 HKFOCJLG_00003 9719 4 Oral 0.29 protein_coding missense_variant MODERATE 1879G>A Val627Ile
M0124654 HKFOCJLG_00003 9954 6 Oral 0.43 protein_coding synonymous_variant LOW 1644C>T Ala548Ala
M0124655 HKFOCJLG_00003 9978 7 Oral 0.50 protein_coding synonymous_variant LOW 1620A>T Ala540Ala
M0124656 HKFOCJLG_00003 10092 3 Oral 0.21 protein_coding synonymous_variant LOW 1506A>T Val502Val
M0124657 HKFOCJLG_00003 10182 6 Oral 0.43 protein_coding synonymous_variant LOW 1416A>T Pro472Pro
M0124658 HKFOCJLG_00003 10230 7 Oral 0.50 protein_coding synonymous_variant LOW 1368T>C Asp456Asp
M0124659 HKFOCJLG_00003 10239 8 Oral 0.57 protein_coding synonymous_variant LOW 1359C>T Thr453Thr
M0124660 HKFOCJLG_00003 10314 4 Oral 0.29 protein_coding synonymous_variant LOW 1284T>C Asp428Asp
M0124661 HKFOCJLG_00003 10376 3 Oral 0.21 protein_coding missense_variant MODERATE 1222G>T Ala408Ser
M0124662 HKFOCJLG_00003 10482 4 Oral 0.29 protein_coding synonymous_variant LOW 1116T>A Ala372Ala
M0124663 HKFOCJLG_00003 10764 5 Oral 0.36 protein_coding missense_variant MODERATE 834C>A Asn278Lys
M0124664 HKFOCJLG_00003 10772 4 Oral 0.29 protein_coding missense_variant MODERATE 826C>G Pro276Ala
M0124665 HKFOCJLG_00001 2617 4 Oral 0.29 protein_coding missense_variant MODERATE 1736A>G Asn579Ser
M0124666 HKFOCJLG_00001 2618 4 Oral 0.29 protein_coding missense_variant MODERATE 1735A>G Asn579Asp
M0124667 HKFOCJLG_00001 2622 4 Oral 0.29 protein_coding synonymous_variant LOW 1731T>G Val577Val
M0124668 HKFOCJLG_00001 2719 3 Oral 0.21 protein_coding missense_variant MODERATE 1634G>A Ser545Asn
M0124669 HKFOCJLG_00001 3111 3 Oral 0.21 protein_coding synonymous_variant LOW 1242G>T Val414Val
M0124670 HKFOCJLG_00001 4556 4 Oral 0.29 protein_coding upstream_gene_variant MODIFIER -204G>A None
M0124671 HKFOCJLG_00002 4634 4 Oral 0.29 protein_coding missense_variant MODERATE 3709G>A Asp1237Asn
M0124672 HKFOCJLG_00002 4895 4 Oral 0.29 protein_coding synonymous_variant LOW 3448C>T Leu1150Leu
M0124673 HKFOCJLG_00002 7800 3 Oral 0.21 protein_coding synonymous_variant LOW 543T>C Asp181Asp
M0124674 HKFOCJLG_00002 7860 3 Oral 0.21 protein_coding synonymous_variant LOW 483A>G Leu161Leu
M0124675 HKFOCJLG_00002 7914 4 Oral 0.29 protein_coding synonymous_variant LOW 429G>A Lys143Lys
M0124676 HKFOCJLG_00002 8010 5 Oral 0.36 protein_coding synonymous_variant LOW 333T>C Gly111Gly
M0124677 HKFOCJLG_00002 8016 3 Oral 0.21 protein_coding synonymous_variant LOW 327C>T Phe109Phe
M0124678 HKFOCJLG_00002 8064 4 Oral 0.29 protein_coding synonymous_variant LOW 279T>C Pro93Pro
M0124679 HKFOCJLG_00002 8085 4 Oral 0.29 protein_coding synonymous_variant LOW 258C>T Arg86Arg
M0124680 HKFOCJLG_00002 8106 5 Oral 0.36 protein_coding synonymous_variant LOW 237T>C Asp79Asp
M0124681 HKFOCJLG_00002 8118 4 Oral 0.29 protein_coding synonymous_variant LOW 225T>C Asp75Asp
M0124682 HKFOCJLG_00002 8160 3 Oral 0.21 protein_coding synonymous_variant LOW 183T>C Tyr61Tyr
M0124683 HKFOCJLG_00002 8163 3 Oral 0.21 protein_coding synonymous_variant LOW 180T>C Phe60Phe
M0124684 HKFOCJLG_00002 8196 3 Oral 0.21 protein_coding synonymous_variant LOW 147A>G Gln49Gln
M0124685 HKFOCJLG_00002 8231 3 Oral 0.21 protein_coding missense_variant MODERATE 112G>T Ala38Ser
M0124686 HKFOCJLG_00001 8434 3 Oral 0.21 protein_coding upstream_gene_variant MODIFIER -4082G>A None
M0124687 HKFOCJLG_00001 8474 4 Oral 0.29 protein_coding upstream_gene_variant MODIFIER -4122A>C None
M0124688 HKFOCJLG_00001 8477 4 Oral 0.29 protein_coding upstream_gene_variant MODIFIER -4125G>A None
M0124689 HKFOCJLG_00001 8494 3 Oral 0.21 protein_coding upstream_gene_variant MODIFIER -4142T>A None
M0124690 HKFOCJLG_00003 8748 4 Oral 0.29 protein_coding synonymous_variant LOW 2850T>C Arg950Arg
M0124691 HKFOCJLG_00003 8751 4 Oral 0.29 protein_coding synonymous_variant LOW 2847C>T Ile949Ile
M0124692 HKFOCJLG_00003 9057 3 Oral 0.21 protein_coding synonymous_variant LOW 2541C>T Thr847Thr
M0124693 HKFOCJLG_00003 9918 3 Oral 0.21 protein_coding synonymous_variant LOW 1680A>C Ala560Ala
M0124694 HKFOCJLG_00003 10470 5 Oral 0.36 protein_coding synonymous_variant LOW 1128A>G Ala376Ala
M0124695 HKFOCJLG_00003 11194 6 Oral 0.43 protein_coding missense_variant MODERATE 404A>G His135Arg
M0124696 HKFOCJLG_00003 11204 3 Oral 0.21 protein_coding missense_variant MODERATE 394G>C Ala132Pro
M0124697 HKFOCJLG_00002 11706 8 Oral 0.57 protein_coding upstream_gene_variant MODIFIER -3364C>T None
M0124698 HKFOCJLG_00002 11708 8 Oral 0.57 protein_coding upstream_gene_variant MODIFIER -3366C>G None
M0124699 HKFOCJLG_00004 11772 3 Oral 0.21 protein_coding synonymous_variant LOW 1023C>T Ile341Ile
M0124700 HKFOCJLG_00004 11774 3 Oral 0.21 protein_coding missense_variant MODERATE 1021A>G Ile341Val
M0124701 HKFOCJLG_00004 11775 3 Oral 0.21 protein_coding missense_variant MODERATE 1020G>T Lys340Asn
M0124702 HKFOCJLG_00004 11776 3 Oral 0.21 protein_coding missense_variant MODERATE 1019A>T Lys340Met
M0124703 HKFOCJLG_00004 11859 5 Oral 0.36 protein_coding synonymous_variant LOW 936T>C Pro312Pro
M0124704 HKFOCJLG_00004 11862 8 Oral 0.57 protein_coding synonymous_variant LOW 933C>A Gly311Gly
M0124705 HKFOCJLG_00004 11884 8 Oral 0.57 protein_coding missense_variant MODERATE 911C>G Thr304Ser
M0124706 HKFOCJLG_00004 11892 8 Oral 0.57 protein_coding synonymous_variant LOW 903T>C Leu301Leu
M0124707 HKFOCJLG_00004 11910 3 Oral 0.21 protein_coding synonymous_variant LOW 885C>T Asn295Asn
M0124708 HKFOCJLG_00004 11946 8 Oral 0.57 protein_coding synonymous_variant LOW 849T>C Gly283Gly
M0124709 HKFOCJLG_00004 11979 8 Oral 0.57 protein_coding synonymous_variant LOW 816G>A Lys272Lys
M0124710 HKFOCJLG_00004 12055 8 Oral 0.57 protein_coding missense_variant MODERATE 740C>G Thr247Ser
M0124711 HKFOCJLG_00004 12076 8 Oral 0.57 protein_coding missense_variant MODERATE 719G>A Arg240Lys
M0124712 HKFOCJLG_00004 12204 8 Oral 0.57 protein_coding synonymous_variant LOW 591T>C Ser197Ser
M0124713 HKFOCJLG_00004 12302 8 Oral 0.57 protein_coding missense_variant MODERATE 493G>A Val165Met
M0124714 HKFOCJLG_00004 12330 7 Oral 0.50 protein_coding synonymous_variant LOW 465T>C Leu155Leu
M0124715 HKFOCJLG_00004 12390 7 Oral 0.50 protein_coding synonymous_variant LOW 405T>C Asp135Asp
M0124716 HKFOCJLG_00004 12396 4 Oral 0.29 protein_coding synonymous_variant LOW 399G>A Lys133Lys
M0124717 HKFOCJLG_00004 12408 8 Oral 0.57 protein_coding synonymous_variant LOW 387A>T Ile129Ile
M0124718 HKFOCJLG_00004 12432 4 Oral 0.29 protein_coding synonymous_variant LOW 363A>G Glu121Glu
M0124719 HKFOCJLG_00004 12435 5 Oral 0.36 protein_coding synonymous_variant LOW 360C>T Asn120Asn
M0124720 HKFOCJLG_00004 12437 7 Oral 0.50 protein_coding missense_variant MODERATE 358A>G Asn120Asp
M0124721 HKFOCJLG_00004 12444 3 Oral 0.21 protein_coding synonymous_variant LOW 351C>G Thr117Thr
M0124722 HKFOCJLG_00004 12445 3 Oral 0.21 protein_coding missense_variant MODERATE 350C>A Thr117Asn
M0124723 HKFOCJLG_00004 12446 3 Oral 0.21 protein_coding missense_variant MODERATE 349A>G Thr117Ala
M0124724 HKFOCJLG_00004 12453 5 Oral 0.36 protein_coding synonymous_variant LOW 342T>C Pro114Pro
M0124725 HKFOCJLG_00004 12483 8 Oral 0.57 protein_coding synonymous_variant LOW 312A>T Ser104Ser
M0124726 HKFOCJLG_00004 12510 8 Oral 0.57 protein_coding synonymous_variant LOW 285A>T Ala95Ala
M0124727 HKFOCJLG_00004 12521 3 Oral 0.21 protein_coding missense_variant MODERATE 274G>C Glu92Gln
M0124728 HKFOCJLG_00004 12631 6 Oral 0.43 protein_coding missense_variant MODERATE 164C>T Thr55Ile
M0124729 HKFOCJLG_00005 13175 3 Oral 0.21 protein_coding missense_variant MODERATE 680A>G Lys227Arg
M0124730 HKFOCJLG_00005 13225 8 Oral 0.57 protein_coding synonymous_variant LOW 630A>G Ala210Ala
M0124731 HKFOCJLG_00001 729 3 Oral 0.21 protein_coding synonymous_variant LOW 3624C>T Asn1208Asn
M0124732 HKFOCJLG_00001 1386 3 Oral 0.21 protein_coding synonymous_variant LOW 2967A>C Gly989Gly
M0124733 HKFOCJLG_00001 1752 3 Oral 0.21 protein_coding synonymous_variant LOW 2601C>T Phe867Phe
M0124734 HKFOCJLG_00002 5202 3 Oral 0.21 protein_coding synonymous_variant LOW 3141G>A Lys1047Lys
M0124735 HKFOCJLG_00002 5205 3 Oral 0.21 protein_coding synonymous_variant LOW 3138T>G Thr1046Thr
M0124736 HKFOCJLG_00002 5206 3 Oral 0.21 protein_coding missense_variant MODERATE 3137C>A Thr1046Asn
M0124737 HKFOCJLG_00002 5207 3 Oral 0.21 protein_coding missense_variant MODERATE 3136A>G Thr1046Ala
M0124738 HKFOCJLG_00002 5274 3 Oral 0.21 protein_coding synonymous_variant LOW 3069G>A Gln1023Gln
M0124739 HKFOCJLG_00002 5349 4 Oral 0.29 protein_coding synonymous_variant LOW 2994G>A Val998Val
M0124740 HKFOCJLG_00002 5406 3 Oral 0.21 protein_coding synonymous_variant LOW 2937C>T Gly979Gly
M0124741 HKFOCJLG_00002 5445 4 Oral 0.29 protein_coding synonymous_variant LOW 2898C>T His966His
M0124742 HKFOCJLG_00002 5595 4 Oral 0.29 protein_coding synonymous_variant LOW 2748T>C Asn916Asn
M0124743 HKFOCJLG_00002 5619 4 Oral 0.29 protein_coding synonymous_variant LOW 2724C>T His908His
M0124744 HKFOCJLG_00002 5626 4 Oral 0.29 protein_coding missense_variant MODERATE 2717A>G Lys906Arg
M0124745 HKFOCJLG_00002 5727 4 Oral 0.29 protein_coding synonymous_variant LOW 2616T>C His872His
M0124746 HKFOCJLG_00002 5796 3 Oral 0.21 protein_coding synonymous_variant LOW 2547A>T Ile849Ile
M0124747 HKFOCJLG_00002 6111 3 Oral 0.21 protein_coding synonymous_variant LOW 2232G>A Glu744Glu
M0124748 HKFOCJLG_00002 6612 3 Oral 0.21 protein_coding synonymous_variant LOW 1731A>C Ala577Ala
M0124749 HKFOCJLG_00002 7116 3 Oral 0.21 protein_coding synonymous_variant LOW 1227G>A Glu409Glu
M0124750 HKFOCJLG_00003 9264 3 Oral 0.21 protein_coding synonymous_variant LOW 2334A>T Ala778Ala
M0124751 HKFOCJLG_00003 9265 3 Oral 0.21 protein_coding missense_variant MODERATE 2333C>G Ala778Gly
M0124752 HKFOCJLG_00003 9273 3 Oral 0.21 protein_coding synonymous_variant LOW 2325G>A Leu775Leu
M0124753 HKFOCJLG_00003 9279 4 Oral 0.29 protein_coding missense_variant MODERATE 2319G>C Lys773Asn
M0124754 HKFOCJLG_00003 9297 3 Oral 0.21 protein_coding synonymous_variant LOW 2301T>A Ala767Ala
M0124755 HKFOCJLG_00003 9312 4 Oral 0.29 protein_coding synonymous_variant LOW 2286T>A Thr762Thr
M0124756 HKFOCJLG_00003 9369 3 Oral 0.21 protein_coding synonymous_variant LOW 2229A>C Thr743Thr
M0124757 HKFOCJLG_00004 12360 6 Oral 0.43 protein_coding stop_gained HIGH 435G>A Trp145*
M0124758 HKFOCJLG_00004 12361 6 Oral 0.43 protein_coding missense_variant MODERATE 434G>C Trp145Ser
M0124759 HKFOCJLG_00004 12362 6 Oral 0.43 protein_coding missense_variant MODERATE 433T>G Trp145Gly
M0124760 HKFOCJLG_00004 12363 6 Oral 0.43 protein_coding synonymous_variant LOW 432A>G Lys144Lys
M0124761 HKFOCJLG_00004 12534 3 Oral 0.21 protein_coding synonymous_variant LOW 261G>A Ala87Ala
M0124762 HKFOCJLG_00004 12567 7 Oral 0.50 protein_coding missense_variant MODERATE 228A>C Leu76Phe
M0124763 HKFOCJLG_00004 12696 3 Oral 0.21 protein_coding synonymous_variant LOW 99C>T Ser33Ser
M0124764 HKFOCJLG_00002 12843 5 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4501T>C None
M0124765 HKFOCJLG_00005 12922 6 Oral 0.43 protein_coding missense_variant MODERATE 933A>T Glu311Asp
M0124766 HKFOCJLG_00005 12991 4 Oral 0.29 protein_coding synonymous_variant LOW 864C>G Ala288Ala
M0124767 HKFOCJLG_00005 13027 3 Oral 0.21 protein_coding synonymous_variant LOW 828C>T Asn276Asn
M0124768 HKFOCJLG_00005 13126 3 Oral 0.21 protein_coding synonymous_variant LOW 729C>T Gly243Gly
M0124769 HKFOCJLG_00005 13408 7 Oral 0.50 protein_coding synonymous_variant LOW 447T>A Thr149Thr
M0124770 HKFOCJLG_00005 13522 7 Oral 0.50 protein_coding synonymous_variant LOW 333T>A Ala111Ala
M0124771 HKFOCJLG_00005 13543 3 Oral 0.21 protein_coding synonymous_variant LOW 312A>C Gly104Gly
M0124772 HKFOCJLG_00005 13576 7 Oral 0.50 protein_coding synonymous_variant LOW 279A>G Lys93Lys
M0124773 HKFOCJLG_00003 13863 5 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2266T>A None
M0124774 HKFOCJLG_00003 13874 3 Oral 0.21 protein_coding upstream_gene_variant MODIFIER -2277T>G None
M0124775 HKFOCJLG_00003 13918 3 Oral 0.21 protein_coding upstream_gene_variant MODIFIER -2321A>G None
M0124776 HKFOCJLG_00003 13929 5 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2332A>G None
M0124777 HKFOCJLG_00003 13952 4 Oral 0.29 protein_coding upstream_gene_variant MODIFIER -2355T>A None
M0124778 HKFOCJLG_00001 3147 3 Oral 0.21 protein_coding synonymous_variant LOW 1206T>C Ile402Ile
M0124779 HKFOCJLG_00001 3149 3 Oral 0.21 protein_coding missense_variant MODERATE 1204A>C Ile402Leu
M0124780 HKFOCJLG_00001 3180 3 Oral 0.21 protein_coding synonymous_variant LOW 1173A>G Glu391Glu
M0124781 HKFOCJLG_00001 3293 3 Oral 0.21 protein_coding missense_variant MODERATE 1060G>A Val354Ile
M0124782 HKFOCJLG_00001 472 3 Oral 0.21 protein_coding downstream_gene_variant MODIFIER *107G>T None
M0124783 HKFOCJLG_00001 473 3 Oral 0.21 protein_coding downstream_gene_variant MODIFIER *106T>A None
M0124784 HKFOCJLG_00001 476 3 Oral 0.21 protein_coding downstream_gene_variant MODIFIER *103T>G None
M0124785 HKFOCJLG_00001 481 3 Oral 0.21 protein_coding downstream_gene_variant MODIFIER *98C>T None
M0124786 HKFOCJLG_00002 5142 3 Oral 0.21 protein_coding synonymous_variant LOW 3201G>A Leu1067Leu
M0124787 HKFOCJLG_00002 5151 3 Oral 0.21 protein_coding synonymous_variant LOW 3192A>G Lys1064Lys
M0124788 HKFOCJLG_00003 8618 4 Oral 0.29 protein_coding missense_variant MODERATE 2980A>G Lys994Glu
M0124789 HKFOCJLG_00003 10413 4 Oral 0.29 protein_coding synonymous_variant LOW 1185T>C Gly395Gly
M0124790 HKFOCJLG_00003 10827 5 Oral 0.36 protein_coding synonymous_variant LOW 771T>C Ala257Ala
M0124791 HKFOCJLG_00005 13621 3 Oral 0.21 protein_coding synonymous_variant LOW 234G>A Leu78Leu
M0124792 HKFOCJLG_00005 13695 5 Oral 0.36 protein_coding synonymous_variant LOW 160C>A Arg54Arg
M0124793 HKFOCJLG_00003 13993 3 Oral 0.21 protein_coding upstream_gene_variant MODIFIER -2396G>C None
M0124794 HKFOCJLG_00003 14014 3 Oral 0.21 protein_coding upstream_gene_variant MODIFIER -2417T>C None
M0124795 HKFOCJLG_00006 14079 3 Oral 0.21 protein_coding missense_variant MODERATE 19G>A Val7Ile
M0124796 HKFOCJLG_00006 14258 3 Oral 0.21 protein_coding synonymous_variant LOW 198G>A Lys66Lys
M0124797 HKFOCJLG_00006 14259 3 Oral 0.21 protein_coding missense_variant MODERATE 199C>G Gln67Glu
M0124798 HKFOCJLG_00006 14260 3 Oral 0.21 protein_coding missense_variant MODERATE 200A>C Gln67Pro
M0124799 HKFOCJLG_00003 14493 3 Oral 0.21 protein_coding upstream_gene_variant MODIFIER -2896T>G None
M0124800 HKFOCJLG_00003 9516 3 Oral 0.21 protein_coding synonymous_variant LOW 2082T>A Ala694Ala
M0124801 HKFOCJLG_00003 9530 3 Oral 0.21 protein_coding missense_variant MODERATE 2068G>A Val690Ile
M0124802 HKFOCJLG_00001 8413 3 Oral 0.21 protein_coding upstream_gene_variant MODIFIER -4061A>G None
M0124803 HKFOCJLG_00004 12369 3 Oral 0.21 protein_coding synonymous_variant LOW 426C>T Ala142Ala
M0124804 HKFOCJLG_00005 12997 3 Oral 0.21 protein_coding synonymous_variant LOW 858A>G Val286Val
M0124805 HKFOCJLG_00005 13063 3 Oral 0.21 protein_coding missense_variant MODERATE 792C>G Ser264Arg
M0124806 HKFOCJLG_00005 13070 3 Oral 0.21 protein_coding missense_variant MODERATE 785C>G Thr262Ser
M0124807 HKFOCJLG_00005 13389 3 Oral 0.21 protein_coding missense_variant MODERATE 466A>G Ile156Val
M0124808 HKFOCJLG_00005 13425 4 Oral 0.29 protein_coding synonymous_variant LOW 430C>T Leu144Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
HKFOCJLG_00001 EFC71169.1|GH85 90.9 0 1 1257 1 1
HKFOCJLG_00002 EFC71170.1|GH85 86.9 0 1 1249 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term