Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2426
  Reference Plasmid   1111525849768046_bin.37__k141_215729
  Reference Plasmid Size   11822
  Reference Plasmid GC Content   0.35
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0124872 ABCDOEON_00007 6528 4 Oral 0.50 protein_coding synonymous_variant LOW 306T>A Gly102Gly
M0124873 ABCDOEON_00007 6543 3 Oral 0.38 protein_coding synonymous_variant LOW 321G>A Pro107Pro
M0124874 ABCDOEON_00007 6585 4 Oral 0.50 protein_coding synonymous_variant LOW 363C>A Ile121Ile
M0124875 ABCDOEON_00007 6588 4 Oral 0.50 protein_coding synonymous_variant LOW 366T>C Asp122Asp
M0124876 ABCDOEON_00007 6592 3 Oral 0.38 protein_coding missense_variant MODERATE 370G>A Ala124Thr
M0124877 ABCDOEON_00007 6595 4 Oral 0.50 protein_coding missense_variant MODERATE 373C>T His125Tyr
M0124878 ABCDOEON_00007 6617 4 Oral 0.50 protein_coding missense_variant MODERATE 395A>G Tyr132Cys
M0124879 ABCDOEON_00007 6622 3 Oral 0.38 protein_coding missense_variant MODERATE 400A>G Ile134Val
M0124880 ABCDOEON_00007 6642 3 Oral 0.38 protein_coding synonymous_variant LOW 420C>T Thr140Thr
M0124881 ABCDOEON_00007 6684 4 Oral 0.50 protein_coding synonymous_variant LOW 462A>G Lys154Lys
M0124882 ABCDOEON_00007 6697 5 Oral 0.63 protein_coding missense_variant MODERATE 475A>G Asn159Asp
M0124883 ABCDOEON_00007 6712 4 Oral 0.50 protein_coding missense_variant MODERATE 490A>G Ile164Val
M0124884 ABCDOEON_00007 6747 5 Oral 0.63 protein_coding synonymous_variant LOW 525G>A Val175Val
M0124885 ABCDOEON_00007 6759 5 Oral 0.63 protein_coding synonymous_variant LOW 537G>A Glu179Glu
M0124886 ABCDOEON_00007 6771 5 Oral 0.63 protein_coding synonymous_variant LOW 549C>T Tyr183Tyr
M0124887 ABCDOEON_00007 6775 4 Oral 0.50 protein_coding missense_variant MODERATE 553G>A Ala185Thr
M0124888 ABCDOEON_00007 6780 5 Oral 0.63 protein_coding synonymous_variant LOW 558A>G Ser186Ser
M0124889 ABCDOEON_00007 6795 5 Oral 0.63 protein_coding synonymous_variant LOW 573C>T Ala191Ala
M0124890 ABCDOEON_00007 6882 5 Oral 0.63 protein_coding synonymous_variant LOW 660A>C Gly220Gly
M0124891 ABCDOEON_00007 6906 5 Oral 0.63 protein_coding synonymous_variant LOW 684C>T His228His
M0124892 ABCDOEON_00007 6907 5 Oral 0.63 protein_coding missense_variant MODERATE 685C>A Leu229Ile
M0124893 ABCDOEON_00007 6933 3 Oral 0.38 protein_coding synonymous_variant LOW 711T>C Arg237Arg
M0124894 ABCDOEON_00007 6959 3 Oral 0.38 protein_coding missense_variant MODERATE 737T>A Leu246Gln
M0124895 ABCDOEON_00007 7047 4 Oral 0.50 protein_coding synonymous_variant LOW 825G>A Gln275Gln
M0124896 ABCDOEON_00007 7086 5 Oral 0.63 protein_coding synonymous_variant LOW 864A>G Val288Val
M0124897 ABCDOEON_00007 7185 4 Oral 0.50 protein_coding synonymous_variant LOW 963C>T Ala321Ala
M0124898 ABCDOEON_00007 7200 5 Oral 0.63 protein_coding synonymous_variant LOW 978T>C Asp326Asp
M0124899 ABCDOEON_00007 7213 5 Oral 0.63 protein_coding missense_variant MODERATE 991G>A Asp331Asn
M0124900 ABCDOEON_00007 7219 4 Oral 0.50 protein_coding missense_variant MODERATE 997C>G Gln333Glu
M0124901 ABCDOEON_00007 7368 3 Oral 0.38 protein_coding synonymous_variant LOW 1146C>T Thr382Thr
M0124902 ABCDOEON_00007 7518 5 Oral 0.63 protein_coding synonymous_variant LOW 1296G>A Gly432Gly
M0124903 ABCDOEON_00007 7614 5 Oral 0.63 protein_coding synonymous_variant LOW 1392A>G Leu464Leu
M0124904 ABCDOEON_00007 7626 5 Oral 0.63 protein_coding synonymous_variant LOW 1404T>A Ala468Ala
M0124905 ABCDOEON_00007 7629 5 Oral 0.63 protein_coding synonymous_variant LOW 1407C>T Asp469Asp
M0124906 ABCDOEON_00007 7677 5 Oral 0.63 protein_coding synonymous_variant LOW 1455G>A Lys485Lys
M0124907 ABCDOEON_00007 7692 3 Oral 0.38 protein_coding synonymous_variant LOW 1470T>C Thr490Thr
M0124908 ABCDOEON_00007 7707 3 Oral 0.38 protein_coding synonymous_variant LOW 1485T>C Gly495Gly
M0124909 ABCDOEON_00007 7802 6 Oral 0.75 protein_coding missense_variant MODERATE 1580C>A Pro527His
M0124910 ABCDOEON_00007 7816 6 Oral 0.75 protein_coding missense_variant MODERATE 1594A>G Ile532Val
M0124911 ABCDOEON_00007 7836 4 Oral 0.50 protein_coding synonymous_variant LOW 1614T>C Asp538Asp
M0124912 ABCDOEON_00007 7839 4 Oral 0.50 protein_coding synonymous_variant LOW 1617C>T Asn539Asn
M0124913 ABCDOEON_00007 7855 4 Oral 0.50 protein_coding missense_variant MODERATE 1633G>A Val545Ile
M0124914 ABCDOEON_00007 7872 5 Oral 0.63 protein_coding synonymous_variant LOW 1650A>G Lys550Lys
M0124915 ABCDOEON_00007 7888 6 Oral 0.75 protein_coding missense_variant MODERATE 1666T>G Ser556Ala
M0124916 ABCDOEON_00007 7914 6 Oral 0.75 protein_coding synonymous_variant LOW 1692T>C Arg564Arg
M0124917 ABCDOEON_00007 7938 3 Oral 0.38 protein_coding missense_variant MODERATE 1716T>A Asp572Glu
M0124918 ABCDOEON_00008 8459 7 Oral 0.88 protein_coding synonymous_variant LOW 291G>A Pro97Pro
M0124919 ABCDOEON_00008 8525 5 Oral 0.63 protein_coding synonymous_variant LOW 357A>G Leu119Leu
M0124920 ABCDOEON_00008 8557 5 Oral 0.63 protein_coding missense_variant MODERATE 389T>A Leu130Gln
M0124921 ABCDOEON_00008 8642 3 Oral 0.38 protein_coding synonymous_variant LOW 474T>C Leu158Leu
M0124922 ABCDOEON_00006 4415 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1275G>T None
M0124923 ABCDOEON_00006 4429 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1261T>C None
M0124924 ABCDOEON_00006 4486 3 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1204G>A None
M0124925 ABCDOEON_00007 6351 3 Oral 0.38 protein_coding synonymous_variant LOW 129G>A Leu43Leu
M0124926 ABCDOEON_00007 6375 3 Oral 0.38 protein_coding synonymous_variant LOW 153T>C Asp51Asp
M0124927 ABCDOEON_00007 6381 3 Oral 0.38 protein_coding synonymous_variant LOW 159T>C Phe53Phe
M0124928 ABCDOEON_00007 6457 3 Oral 0.38 protein_coding missense_variant MODERATE 235A>G Asn79Asp
M0124929 ABCDOEON_00007 6483 3 Oral 0.38 protein_coding synonymous_variant LOW 261T>A Leu87Leu
M0124930 ABCDOEON_00007 7318 4 Oral 0.50 protein_coding synonymous_variant LOW 1096T>C Leu366Leu
M0124931 ABCDOEON_00007 7446 3 Oral 0.38 protein_coding missense_variant MODERATE 1224T>A Asp408Glu
M0124932 ABCDOEON_00007 7548 3 Oral 0.38 protein_coding synonymous_variant LOW 1326G>A Val442Val
M0124933 ABCDOEON_00007 7575 4 Oral 0.50 protein_coding synonymous_variant LOW 1353T>A Gly451Gly
M0124934 ABCDOEON_00007 7985 4 Oral 0.50 protein_coding missense_variant MODERATE 1763T>A Leu588Gln
M0124935 ABCDOEON_00008 8315 5 Oral 0.63 protein_coding missense_variant MODERATE 147A>G Ile49Met
M0124936 ABCDOEON_00008 8327 4 Oral 0.50 protein_coding synonymous_variant LOW 159C>T Tyr53Tyr
M0124937 ABCDOEON_00008 8421 3 Oral 0.38 protein_coding missense_variant MODERATE 253C>A Leu85Ile
M0124938 ABCDOEON_00009 9188 3 Oral 0.38 protein_coding synonymous_variant LOW 294C>T Asp98Asp
M0124939 ABCDOEON_00009 9197 3 Oral 0.38 protein_coding synonymous_variant LOW 303G>A Lys101Lys
M0124940 ABCDOEON_00009 9305 3 Oral 0.38 protein_coding synonymous_variant LOW 411T>C Gly137Gly
M0124941 ABCDOEON_00009 9438 6 Oral 0.75 protein_coding missense_variant MODERATE 544A>G Asn182Asp
M0124942 ABCDOEON_00009 9541 6 Oral 0.75 protein_coding missense_variant MODERATE 647A>G Asp216Gly
M0124943 ABCDOEON_00009 9659 4 Oral 0.50 protein_coding synonymous_variant LOW 765T>C Ile255Ile
M0124944 ABCDOEON_00009 9716 3 Oral 0.38 protein_coding synonymous_variant LOW 822A>G Val274Val
M0124945 ABCDOEON_00009 9767 3 Oral 0.38 protein_coding synonymous_variant LOW 873T>A Ile291Ile
M0124946 ABCDOEON_00009 9915 7 Oral 0.88 protein_coding missense_variant MODERATE 1021T>A Ser341Thr
M0124947 ABCDOEON_00009 9923 6 Oral 0.75 protein_coding synonymous_variant LOW 1029A>G Lys343Lys
M0124948 ABCDOEON_00010 10302 3 Oral 0.38 protein_coding synonymous_variant LOW 123C>T Ile41Ile
M0124949 ABCDOEON_00010 10445 6 Oral 0.75 protein_coding missense_variant MODERATE 266G>A Arg89Lys
M0124950 ABCDOEON_00010 10467 3 Oral 0.38 protein_coding synonymous_variant LOW 288A>G Glu96Glu
M0124951 ABCDOEON_00010 10659 3 Oral 0.38 protein_coding synonymous_variant LOW 480A>G Glu160Glu
M0124952 ABCDOEON_00010 10684 4 Oral 0.50 protein_coding missense_variant MODERATE 505A>T Thr169Ser
M0124953 ABCDOEON_00010 10713 4 Oral 0.50 protein_coding synonymous_variant LOW 534T>A Val178Val
M0124954 ABCDOEON_00010 10746 4 Oral 0.50 protein_coding synonymous_variant LOW 567T>A Thr189Thr
M0124955 ABCDOEON_00010 10752 4 Oral 0.50 protein_coding synonymous_variant LOW 573C>T Ile191Ile
M0124956 ABCDOEON_00010 10800 7 Oral 0.88 protein_coding synonymous_variant LOW 621A>T Ala207Ala
M0124957 ABCDOEON_00010 10803 7 Oral 0.88 protein_coding synonymous_variant LOW 624A>C Ile208Ile
M0124958 ABCDOEON_00010 10818 7 Oral 0.88 protein_coding synonymous_variant LOW 639A>G Lys213Lys
M0124959 ABCDOEON_00010 10869 4 Oral 0.50 protein_coding synonymous_variant LOW 690T>C Asp230Asp
M0124960 ABCDOEON_00010 10962 6 Oral 0.75 protein_coding missense_variant MODERATE 783A>T Glu261Asp
M0124961 ABCDOEON_00010 10992 5 Oral 0.63 protein_coding synonymous_variant LOW 813C>T Arg271Arg
M0124962 ABCDOEON_00010 11010 7 Oral 0.88 protein_coding synonymous_variant LOW 831G>A Leu277Leu
M0124963 ABCDOEON_00010 11091 7 Oral 0.88 protein_coding synonymous_variant LOW 912C>T Phe304Phe
M0124964 ABCDOEON_00010 11229 6 Oral 0.75 protein_coding synonymous_variant LOW 1050A>G Leu350Leu
M0124965 ABCDOEON_00010 11316 7 Oral 0.88 protein_coding synonymous_variant LOW 1137C>T Cys379Cys
M0124966 ABCDOEON_00010 11346 7 Oral 0.88 protein_coding synonymous_variant LOW 1167C>T Asn389Asn
M0124967 ABCDOEON_00010 11391 3 Oral 0.38 protein_coding synonymous_variant LOW 1212A>G Lys404Lys
M0124968 ABCDOEON_00010 11406 7 Oral 0.88 protein_coding synonymous_variant LOW 1227T>C Ala409Ala
M0124969 ABCDOEON_00010 11418 3 Oral 0.38 protein_coding synonymous_variant LOW 1239A>G Gln413Gln
M0124970 ABCDOEON_00010 11430 3 Oral 0.38 protein_coding synonymous_variant LOW 1251A>T Val417Val
M0124971 ABCDOEON_00010 11439 3 Oral 0.38 protein_coding synonymous_variant LOW 1260A>T Ala420Ala
M0124972 ABCDOEON_00007 11699 3 Oral 0.38 protein_coding downstream_gene_variant MODIFIER *3530T>C None
M0124973 ABCDOEON_00007 11700 6 Oral 0.75 protein_coding downstream_gene_variant MODIFIER *3531T>C None
M0124974 ABCDOEON_00008 8750 5 Oral 0.63 protein_coding synonymous_variant LOW 582G>A Val194Val
M0124975 ABCDOEON_00008 8774 4 Oral 0.50 protein_coding missense_variant MODERATE 606T>G His202Gln
M0124976 ABCDOEON_00009 9230 3 Oral 0.38 protein_coding synonymous_variant LOW 336T>C Thr112Thr
M0124977 ABCDOEON_00009 9254 4 Oral 0.50 protein_coding synonymous_variant LOW 360A>G Gln120Gln
M0124978 ABCDOEON_00009 9269 4 Oral 0.50 protein_coding synonymous_variant LOW 375C>T Gly125Gly
M0124979 ABCDOEON_00009 9275 4 Oral 0.50 protein_coding synonymous_variant LOW 381C>T Asn127Asn
M0124980 ABCDOEON_00010 10824 5 Oral 0.63 protein_coding synonymous_variant LOW 645T>G Gly215Gly
M0124981 ABCDOEON_00010 10836 5 Oral 0.63 protein_coding synonymous_variant LOW 657C>T Val219Val
M0124982 ABCDOEON_00007 7671 3 Oral 0.38 protein_coding synonymous_variant LOW 1449T>G Ala483Ala
M0124983 ABCDOEON_00009 9347 3 Oral 0.38 protein_coding synonymous_variant LOW 453T>A Val151Val
M0124984 ABCDOEON_00009 9623 3 Oral 0.38 protein_coding synonymous_variant LOW 729T>C Asn243Asn
M0124985 ABCDOEON_00009 9633 4 Oral 0.50 protein_coding missense_variant MODERATE 739G>T Ala247Ser
M0124986 ABCDOEON_00009 9791 3 Oral 0.38 protein_coding synonymous_variant LOW 897C>T Gly299Gly
M0124987 ABCDOEON_00009 9839 3 Oral 0.38 protein_coding synonymous_variant LOW 945G>A Ala315Ala
M0124988 ABCDOEON_00009 9956 4 Oral 0.50 protein_coding synonymous_variant LOW 1062T>C Ile354Ile
M0124989 ABCDOEON_00009 10043 3 Oral 0.38 protein_coding synonymous_variant LOW 1149C>T Cys383Cys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term