Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2427
  Reference Plasmid   1111525849768046_bin.37__k141_222097
  Reference Plasmid Size   8843
  Reference Plasmid GC Content   0.42
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0124990 EPOGFDCJ_00001 435 10 Oral 0.77 protein_coding synonymous_variant LOW 75G>A Pro25Pro
M0124991 EPOGFDCJ_00001 513 8 Oral 0.62 protein_coding synonymous_variant LOW 153A>G Ala51Ala
M0124992 EPOGFDCJ_00001 606 10 Oral 0.77 protein_coding synonymous_variant LOW 246C>T Phe82Phe
M0124993 EPOGFDCJ_00001 684 4 Oral 0.31 protein_coding synonymous_variant LOW 324C>T Asp108Asp
M0124994 EPOGFDCJ_00001 786 8 Oral 0.62 protein_coding synonymous_variant LOW 426G>T Thr142Thr
M0124995 EPOGFDCJ_00001 853 11 Oral 0.85 protein_coding synonymous_variant LOW 493T>C Leu165Leu
M0124996 EPOGFDCJ_00001 873 6 Oral 0.46 protein_coding synonymous_variant LOW 513A>T Ile171Ile
M0124997 EPOGFDCJ_00001 990 3 Oral 0.23 protein_coding synonymous_variant LOW 630G>A Leu210Leu
M0124998 EPOGFDCJ_00001 1182 11 Oral 0.85 protein_coding synonymous_variant LOW 822C>A Gly274Gly
M0124999 EPOGFDCJ_00001 1248 3 Oral 0.23 protein_coding synonymous_variant LOW 888G>A Glu296Glu
M0125000 EPOGFDCJ_00001 1251 8 Oral 0.62 protein_coding synonymous_variant LOW 891G>A Gln297Gln
M0125001 EPOGFDCJ_00002 1393 11 Oral 0.85 protein_coding missense_variant MODERATE 98T>C Val33Ala
M0125002 EPOGFDCJ_00002 1397 7 Oral 0.54 protein_coding missense_variant MODERATE 102A>C Lys34Asn
M0125003 EPOGFDCJ_00002 1418 3 Oral 0.23 protein_coding synonymous_variant LOW 123G>C Thr41Thr
M0125004 EPOGFDCJ_00002 1712 3 Oral 0.23 protein_coding synonymous_variant LOW 417C>T Thr139Thr
M0125005 EPOGFDCJ_00003 2209 3 Oral 0.23 protein_coding synonymous_variant LOW 393C>T Ser131Ser
M0125006 EPOGFDCJ_00003 2275 9 Oral 0.69 protein_coding synonymous_variant LOW 459C>T Pro153Pro
M0125007 EPOGFDCJ_00003 2305 3 Oral 0.23 protein_coding synonymous_variant LOW 489T>A Gly163Gly
M0125008 EPOGFDCJ_00003 2341 8 Oral 0.62 protein_coding synonymous_variant LOW 525G>T Pro175Pro
M0125009 EPOGFDCJ_00003 2473 5 Oral 0.38 protein_coding synonymous_variant LOW 657C>A Leu219Leu
M0125010 EPOGFDCJ_00003 2476 8 Oral 0.62 protein_coding synonymous_variant LOW 660C>T Asn220Asn
M0125011 EPOGFDCJ_00003 2479 3 Oral 0.23 protein_coding synonymous_variant LOW 663A>G Lys221Lys
M0125012 EPOGFDCJ_00003 2578 8 Oral 0.62 protein_coding synonymous_variant LOW 762T>C Asn254Asn
M0125013 EPOGFDCJ_00003 2722 11 Oral 0.85 protein_coding synonymous_variant LOW 906C>T Leu302Leu
M0125014 EPOGFDCJ_00003 2746 5 Oral 0.38 protein_coding synonymous_variant LOW 930T>C Val310Val
M0125015 EPOGFDCJ_00003 2800 10 Oral 0.77 protein_coding synonymous_variant LOW 984T>C Val328Val
M0125016 EPOGFDCJ_00003 2920 7 Oral 0.54 protein_coding synonymous_variant LOW 1104T>A Gly368Gly
M0125017 EPOGFDCJ_00003 2926 11 Oral 0.85 protein_coding synonymous_variant LOW 1110T>C Ser370Ser
M0125018 EPOGFDCJ_00003 2995 11 Oral 0.85 protein_coding synonymous_variant LOW 1179C>T Leu393Leu
M0125019 EPOGFDCJ_00003 3028 5 Oral 0.38 protein_coding synonymous_variant LOW 1212A>T Ala404Ala
M0125020 EPOGFDCJ_00003 3058 9 Oral 0.69 protein_coding synonymous_variant LOW 1242A>G Lys414Lys
M0125021 EPOGFDCJ_00003 3160 11 Oral 0.85 protein_coding synonymous_variant LOW 1344T>C Tyr448Tyr
M0125022 EPOGFDCJ_00003 3310 5 Oral 0.38 protein_coding synonymous_variant LOW 1494A>G Leu498Leu
M0125023 EPOGFDCJ_00003 3355 10 Oral 0.77 protein_coding synonymous_variant LOW 1539A>G Lys513Lys
M0125024 EPOGFDCJ_00003 3404 10 Oral 0.77 protein_coding missense_variant MODERATE 1588A>G Ile530Val
M0125025 EPOGFDCJ_00003 3466 11 Oral 0.85 protein_coding synonymous_variant LOW 1650T>C Ala550Ala
M0125026 EPOGFDCJ_00003 3487 10 Oral 0.77 protein_coding synonymous_variant LOW 1671T>C Cys557Cys
M0125027 EPOGFDCJ_00003 3511 11 Oral 0.85 protein_coding synonymous_variant LOW 1695C>T Gly565Gly
M0125028 EPOGFDCJ_00003 3517 11 Oral 0.85 protein_coding synonymous_variant LOW 1701T>A Pro567Pro
M0125029 EPOGFDCJ_00003 3529 8 Oral 0.62 protein_coding synonymous_variant LOW 1713T>C Gly571Gly
M0125030 EPOGFDCJ_00003 3711 10 Oral 0.77 protein_coding missense_variant MODERATE 1895C>G Thr632Ser
M0125031 EPOGFDCJ_00003 3714 10 Oral 0.77 protein_coding missense_variant MODERATE 1898A>G Asn633Ser
M0125032 EPOGFDCJ_00003 3718 4 Oral 0.31 protein_coding synonymous_variant LOW 1902G>T Val634Val
M0125033 EPOGFDCJ_00003 3805 9 Oral 0.69 protein_coding synonymous_variant LOW 1989T>C Ser663Ser
M0125034 EPOGFDCJ_00003 3829 9 Oral 0.69 protein_coding synonymous_variant LOW 2013T>C Gly671Gly
M0125035 EPOGFDCJ_00003 3922 3 Oral 0.23 protein_coding synonymous_variant LOW 2106A>T Ser702Ser
M0125036 EPOGFDCJ_00003 3937 9 Oral 0.69 protein_coding synonymous_variant LOW 2121T>C Ile707Ile
M0125037 EPOGFDCJ_00004 3975 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -102C>A None
M0125038 EPOGFDCJ_00004 3993 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -84C>T None
M0125039 EPOGFDCJ_00004 4250 5 Oral 0.38 protein_coding synonymous_variant LOW 174A>G Glu58Glu
M0125040 EPOGFDCJ_00004 4253 11 Oral 0.85 protein_coding synonymous_variant LOW 177G>A Lys59Lys
M0125041 EPOGFDCJ_00004 4256 3 Oral 0.23 protein_coding synonymous_variant LOW 180C>T Gly60Gly
M0125042 EPOGFDCJ_00001 155 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -206T>G None
M0125043 EPOGFDCJ_00001 203 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -158C>T None
M0125044 EPOGFDCJ_00001 238 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -123T>C None
M0125045 EPOGFDCJ_00001 278 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -83A>G None
M0125046 EPOGFDCJ_00001 280 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -81G>A None
M0125047 EPOGFDCJ_00001 314 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -47C>G None
M0125048 EPOGFDCJ_00001 672 3 Oral 0.23 protein_coding synonymous_variant LOW 312C>T Gly104Gly
M0125049 EPOGFDCJ_00001 681 5 Oral 0.38 protein_coding synonymous_variant LOW 321C>A Ala107Ala
M0125050 EPOGFDCJ_00001 735 3 Oral 0.23 protein_coding synonymous_variant LOW 375T>C Phe125Phe
M0125051 EPOGFDCJ_00001 810 7 Oral 0.54 protein_coding synonymous_variant LOW 450T>C Tyr150Tyr
M0125052 EPOGFDCJ_00001 1206 4 Oral 0.31 protein_coding synonymous_variant LOW 846C>G Leu282Leu
M0125053 EPOGFDCJ_00002 1439 3 Oral 0.23 protein_coding synonymous_variant LOW 144A>G Leu48Leu
M0125054 EPOGFDCJ_00003 2521 3 Oral 0.23 protein_coding synonymous_variant LOW 705C>T Asp235Asp
M0125055 EPOGFDCJ_00003 2575 5 Oral 0.38 protein_coding synonymous_variant LOW 759T>C Ile253Ile
M0125056 EPOGFDCJ_00003 2959 9 Oral 0.69 protein_coding synonymous_variant LOW 1143T>C Pro381Pro
M0125057 EPOGFDCJ_00003 3215 8 Oral 0.62 protein_coding missense_variant MODERATE 1399A>G Ile467Val
M0125058 EPOGFDCJ_00003 3391 6 Oral 0.46 protein_coding synonymous_variant LOW 1575G>A Gln525Gln
M0125059 EPOGFDCJ_00003 3565 9 Oral 0.69 protein_coding synonymous_variant LOW 1749A>G Glu583Glu
M0125060 EPOGFDCJ_00003 3604 7 Oral 0.54 protein_coding synonymous_variant LOW 1788C>T Asp596Asp
M0125061 EPOGFDCJ_00003 3610 4 Oral 0.31 protein_coding synonymous_variant LOW 1794T>A Arg598Arg
M0125062 EPOGFDCJ_00003 3637 9 Oral 0.69 protein_coding missense_variant MODERATE 1821C>G Asp607Glu
M0125063 EPOGFDCJ_00003 3892 6 Oral 0.46 protein_coding synonymous_variant LOW 2076A>C Gly692Gly
M0125064 EPOGFDCJ_00004 3995 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -82C>T None
M0125065 EPOGFDCJ_00004 4124 5 Oral 0.38 protein_coding synonymous_variant LOW 48T>A Ile16Ile
M0125066 EPOGFDCJ_00004 4132 5 Oral 0.38 protein_coding missense_variant MODERATE 56T>C Val19Ala
M0125067 EPOGFDCJ_00004 4286 9 Oral 0.69 protein_coding synonymous_variant LOW 210T>A Pro70Pro
M0125068 EPOGFDCJ_00004 4448 5 Oral 0.38 protein_coding synonymous_variant LOW 372C>T Asn124Asn
M0125069 EPOGFDCJ_00004 4449 5 Oral 0.38 protein_coding synonymous_variant LOW 373T>C Leu125Leu
M0125070 EPOGFDCJ_00004 4535 8 Oral 0.62 protein_coding synonymous_variant LOW 459C>A Thr153Thr
M0125071 EPOGFDCJ_00004 4583 10 Oral 0.77 protein_coding synonymous_variant LOW 507G>A Glu169Glu
M0125072 EPOGFDCJ_00004 4631 5 Oral 0.38 protein_coding synonymous_variant LOW 555C>A Ala185Ala
M0125073 EPOGFDCJ_00004 4664 9 Oral 0.69 protein_coding synonymous_variant LOW 588T>C Gly196Gly
M0125074 EPOGFDCJ_00004 4691 10 Oral 0.77 protein_coding synonymous_variant LOW 615C>T Asp205Asp
M0125075 EPOGFDCJ_00004 4847 3 Oral 0.23 protein_coding synonymous_variant LOW 771T>C Ser257Ser
M0125076 EPOGFDCJ_00004 4853 8 Oral 0.62 protein_coding synonymous_variant LOW 777C>T Arg259Arg
M0125077 EPOGFDCJ_00004 5019 5 Oral 0.38 protein_coding missense_variant MODERATE 943G>A Val315Ile
M0125078 EPOGFDCJ_00004 5117 9 Oral 0.69 protein_coding synonymous_variant LOW 1041C>T Thr347Thr
M0125079 EPOGFDCJ_00004 5261 5 Oral 0.38 protein_coding synonymous_variant LOW 1185T>C Asp395Asp
M0125080 EPOGFDCJ_00004 5402 3 Oral 0.23 protein_coding synonymous_variant LOW 1326T>C Cys442Cys
M0125081 EPOGFDCJ_00005 5551 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -224T>G None
M0125082 EPOGFDCJ_00005 5553 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -222C>T None
M0125083 EPOGFDCJ_00005 5570 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -205G>A None
M0125084 EPOGFDCJ_00005 5581 10 Oral 0.77 protein_coding upstream_gene_variant MODIFIER -194T>C None
M0125085 EPOGFDCJ_00005 5605 10 Oral 0.77 protein_coding upstream_gene_variant MODIFIER -170T>C None
M0125086 EPOGFDCJ_00005 5645 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -130T>A None
M0125087 EPOGFDCJ_00005 5670 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -105G>A None
M0125088 EPOGFDCJ_00005 5693 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -82G>A None
M0125089 EPOGFDCJ_00005 5698 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -77T>C None
M0125090 EPOGFDCJ_00005 5739 10 Oral 0.77 protein_coding upstream_gene_variant MODIFIER -36A>G None
M0125091 EPOGFDCJ_00005 5772 10 Oral 0.77 protein_coding upstream_gene_variant MODIFIER -3G>A None
M0125092 EPOGFDCJ_00005 5906 10 Oral 0.77 protein_coding synonymous_variant LOW 132C>T Arg44Arg
M0125093 EPOGFDCJ_00005 6149 10 Oral 0.77 protein_coding synonymous_variant LOW 375A>G Lys125Lys
M0125094 EPOGFDCJ_00005 6314 4 Oral 0.31 protein_coding synonymous_variant LOW 540T>C Arg180Arg
M0125095 EPOGFDCJ_00005 6365 3 Oral 0.23 protein_coding synonymous_variant LOW 591C>T Tyr197Tyr
M0125096 EPOGFDCJ_00005 6482 9 Oral 0.69 protein_coding synonymous_variant LOW 708A>T Gly236Gly
M0125097 EPOGFDCJ_00005 6500 3 Oral 0.23 protein_coding synonymous_variant LOW 726T>A Ala242Ala
M0125098 EPOGFDCJ_00005 6569 10 Oral 0.77 protein_coding synonymous_variant LOW 795T>G Ala265Ala
M0125099 EPOGFDCJ_00005 6609 6 Oral 0.46 protein_coding synonymous_variant LOW 835C>T Leu279Leu
M0125100 EPOGFDCJ_00005 6725 7 Oral 0.54 protein_coding synonymous_variant LOW 951A>T Ile317Ile
M0125101 EPOGFDCJ_00005 6728 6 Oral 0.46 protein_coding synonymous_variant LOW 954A>G Ala318Ala
M0125102 EPOGFDCJ_00005 6809 9 Oral 0.69 protein_coding synonymous_variant LOW 1035T>A Ile345Ile
M0125103 EPOGFDCJ_00005 6905 10 Oral 0.77 protein_coding synonymous_variant LOW 1131T>C Asp377Asp
M0125104 EPOGFDCJ_00005 6983 6 Oral 0.46 protein_coding synonymous_variant LOW 1209T>C Arg403Arg
M0125105 EPOGFDCJ_00006 7091 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -52T>A None
M0125106 EPOGFDCJ_00006 7104 9 Oral 0.69 protein_coding upstream_gene_variant MODIFIER -39G>T None
M0125107 EPOGFDCJ_00006 7199 4 Oral 0.31 protein_coding synonymous_variant LOW 57A>G Leu19Leu
M0125108 EPOGFDCJ_00006 7269 8 Oral 0.62 protein_coding synonymous_variant LOW 127T>C Leu43Leu
M0125109 EPOGFDCJ_00006 7301 4 Oral 0.31 protein_coding synonymous_variant LOW 159A>C Gly53Gly
M0125110 EPOGFDCJ_00006 7313 11 Oral 0.85 protein_coding synonymous_variant LOW 171T>A Ala57Ala
M0125111 EPOGFDCJ_00006 7322 3 Oral 0.23 protein_coding synonymous_variant LOW 180T>C Ile60Ile
M0125112 EPOGFDCJ_00006 7430 11 Oral 0.85 protein_coding synonymous_variant LOW 288G>A Ala96Ala
M0125113 EPOGFDCJ_00006 7487 11 Oral 0.85 protein_coding synonymous_variant LOW 345A>T Thr115Thr
M0125114 EPOGFDCJ_00006 7508 6 Oral 0.46 protein_coding synonymous_variant LOW 366T>C His122His
M0125115 EPOGFDCJ_00006 7529 4 Oral 0.31 protein_coding synonymous_variant LOW 387T>C Tyr129Tyr
M0125116 EPOGFDCJ_00006 7586 3 Oral 0.23 protein_coding synonymous_variant LOW 444T>C Ala148Ala
M0125117 EPOGFDCJ_00006 7604 8 Oral 0.62 protein_coding synonymous_variant LOW 462T>C Ile154Ile
M0125118 EPOGFDCJ_00006 7616 5 Oral 0.38 protein_coding synonymous_variant LOW 474C>T Ser158Ser
M0125119 EPOGFDCJ_00006 7784 4 Oral 0.31 protein_coding synonymous_variant LOW 642A>C Ala214Ala
M0125120 EPOGFDCJ_00006 7793 3 Oral 0.23 protein_coding synonymous_variant LOW 651G>A Glu217Glu
M0125121 EPOGFDCJ_00006 7946 10 Oral 0.77 protein_coding synonymous_variant LOW 804A>T Ser268Ser
M0125122 EPOGFDCJ_00006 7964 5 Oral 0.38 protein_coding synonymous_variant LOW 822T>C Asn274Asn
M0125123 EPOGFDCJ_00006 7967 5 Oral 0.38 protein_coding synonymous_variant LOW 825A>C Leu275Leu
M0125124 EPOGFDCJ_00006 8009 4 Oral 0.31 protein_coding synonymous_variant LOW 867C>T Gly289Gly
M0125125 EPOGFDCJ_00006 8015 11 Oral 0.85 protein_coding synonymous_variant LOW 873C>T Asp291Asp
M0125126 EPOGFDCJ_00006 8018 7 Oral 0.54 protein_coding synonymous_variant LOW 876T>G Val292Val
M0125127 EPOGFDCJ_00006 8054 4 Oral 0.31 protein_coding synonymous_variant LOW 912T>C Gly304Gly
M0125128 EPOGFDCJ_00006 8111 4 Oral 0.31 protein_coding synonymous_variant LOW 969T>C Asp323Asp
M0125129 EPOGFDCJ_00006 8216 6 Oral 0.46 protein_coding synonymous_variant LOW 1074A>G Glu358Glu
M0125130 EPOGFDCJ_00006 8231 11 Oral 0.85 protein_coding synonymous_variant LOW 1089T>G Val363Val
M0125131 EPOGFDCJ_00006 8291 10 Oral 0.77 protein_coding synonymous_variant LOW 1149T>C Phe383Phe
M0125132 EPOGFDCJ_00006 8307 6 Oral 0.46 protein_coding missense_variant MODERATE 1165G>A Val389Ile
M0125133 EPOGFDCJ_00006 8405 7 Oral 0.54 protein_coding synonymous_variant LOW 1263C>T Ala421Ala
M0125134 EPOGFDCJ_00006 8441 10 Oral 0.77 protein_coding synonymous_variant LOW 1299T>C Gly433Gly
M0125135 EPOGFDCJ_00006 8471 10 Oral 0.77 protein_coding synonymous_variant LOW 1329G>A Ala443Ala
M0125136 EPOGFDCJ_00007 8777 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -151C>T None
M0125137 EPOGFDCJ_00007 8780 10 Oral 0.77 protein_coding upstream_gene_variant MODIFIER -154A>G None
M0125138 EPOGFDCJ_00007 8787 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -161T>A None
M0125139 EPOGFDCJ_00003 1990 3 Oral 0.23 protein_coding synonymous_variant LOW 174C>T Pro58Pro
M0125140 EPOGFDCJ_00003 2176 3 Oral 0.23 protein_coding synonymous_variant LOW 360A>G Lys120Lys
M0125141 EPOGFDCJ_00003 2257 4 Oral 0.31 protein_coding synonymous_variant LOW 441T>C Thr147Thr
M0125142 EPOGFDCJ_00003 3475 4 Oral 0.31 protein_coding synonymous_variant LOW 1659C>T Pro553Pro
M0125143 EPOGFDCJ_00004 4016 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -61C>T None
M0125144 EPOGFDCJ_00004 4748 4 Oral 0.31 protein_coding synonymous_variant LOW 672C>T Phe224Phe
M0125145 EPOGFDCJ_00005 5566 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -209C>T None
M0125146 EPOGFDCJ_00005 6426 3 Oral 0.23 protein_coding missense_variant MODERATE 652G>A Val218Ile
M0125147 EPOGFDCJ_00005 6428 3 Oral 0.23 protein_coding synonymous_variant LOW 654T>C Val218Val
M0125148 EPOGFDCJ_00005 6488 6 Oral 0.46 protein_coding synonymous_variant LOW 714T>C Asp238Asp
M0125149 EPOGFDCJ_00005 6563 5 Oral 0.38 protein_coding synonymous_variant LOW 789A>G Glu263Glu
M0125150 EPOGFDCJ_00006 7463 10 Oral 0.77 protein_coding synonymous_variant LOW 321T>C Ile107Ile
M0125151 EPOGFDCJ_00006 7682 5 Oral 0.38 protein_coding synonymous_variant LOW 540A>T Pro180Pro
M0125152 EPOGFDCJ_00006 7685 3 Oral 0.23 protein_coding synonymous_variant LOW 543T>C Asp181Asp
M0125153 EPOGFDCJ_00006 7850 4 Oral 0.31 protein_coding synonymous_variant LOW 708T>A Ser236Ser
M0125154 EPOGFDCJ_00006 7856 9 Oral 0.69 protein_coding synonymous_variant LOW 714T>C Tyr238Tyr
M0125155 EPOGFDCJ_00006 7877 9 Oral 0.69 protein_coding synonymous_variant LOW 735C>G Ala245Ala
M0125156 EPOGFDCJ_00006 7892 9 Oral 0.69 protein_coding synonymous_variant LOW 750C>T Gly250Gly
M0125157 EPOGFDCJ_00006 7898 8 Oral 0.62 protein_coding synonymous_variant LOW 756T>A Ile252Ile
M0125158 EPOGFDCJ_00006 8273 3 Oral 0.23 protein_coding synonymous_variant LOW 1131C>T Asn377Asn
M0125159 EPOGFDCJ_00007 8744 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -118G>A None
M0125160 EPOGFDCJ_00001 46 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -315A>T None
M0125161 EPOGFDCJ_00001 139 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -222T>C None
M0125162 EPOGFDCJ_00001 269 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -92C>T None
M0125163 EPOGFDCJ_00003 2362 6 Oral 0.46 protein_coding synonymous_variant LOW 546C>T Arg182Arg
M0125164 EPOGFDCJ_00003 3963 5 Oral 0.38 protein_coding missense_variant MODERATE 2147C>T Thr716Ile
M0125165 EPOGFDCJ_00003 3970 5 Oral 0.38 protein_coding missense_variant MODERATE 2154C>G Asp718Glu
M0125166 EPOGFDCJ_00004 4025 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -52T>G None
M0125167 EPOGFDCJ_00004 4027 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -50C>G None
M0125168 EPOGFDCJ_00004 4685 6 Oral 0.46 protein_coding synonymous_variant LOW 609T>C Thr203Thr
M0125169 EPOGFDCJ_00004 4883 4 Oral 0.31 protein_coding synonymous_variant LOW 807T>C Ile269Ile
M0125170 EPOGFDCJ_00005 5592 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -183C>A None
M0125171 EPOGFDCJ_00005 6299 3 Oral 0.23 protein_coding synonymous_variant LOW 525C>T His175His
M0125172 EPOGFDCJ_00005 6320 3 Oral 0.23 protein_coding synonymous_variant LOW 546G>A Ser182Ser
M0125173 EPOGFDCJ_00005 6434 4 Oral 0.31 protein_coding synonymous_variant LOW 660C>T Thr220Thr
M0125174 EPOGFDCJ_00005 6449 3 Oral 0.23 protein_coding synonymous_variant LOW 675A>T Thr225Thr
M0125175 EPOGFDCJ_00006 7418 3 Oral 0.23 protein_coding synonymous_variant LOW 276A>G Glu92Glu
M0125176 EPOGFDCJ_00006 8180 7 Oral 0.54 protein_coding synonymous_variant LOW 1038A>T Ile346Ile
M0125177 EPOGFDCJ_00006 8366 4 Oral 0.31 protein_coding synonymous_variant LOW 1224C>T Ala408Ala
M0125178 EPOGFDCJ_00006 7796 5 Oral 0.38 protein_coding synonymous_variant LOW 654A>T Val218Val
M0125179 EPOGFDCJ_00006 7854 4 Oral 0.31 protein_coding missense_variant MODERATE 712T>A Tyr238Asn
M0125180 EPOGFDCJ_00001 291 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -70C>T None
M0125181 EPOGFDCJ_00001 420 4 Oral 0.31 protein_coding synonymous_variant LOW 60A>G Gly20Gly
M0125182 EPOGFDCJ_00004 5411 3 Oral 0.23 protein_coding synonymous_variant LOW 1335G>A Ala445Ala
M0125183 EPOGFDCJ_00006 7565 4 Oral 0.31 protein_coding synonymous_variant LOW 423C>T Leu141Leu
M0125184 EPOGFDCJ_00006 7994 3 Oral 0.23 protein_coding synonymous_variant LOW 852A>G Ala284Ala
M0125185 EPOGFDCJ_00001 750 3 Oral 0.23 protein_coding synonymous_variant LOW 390C>A Pro130Pro
M0125186 EPOGFDCJ_00004 5036 3 Oral 0.23 protein_coding synonymous_variant LOW 960C>T Ser320Ser
M0125187 EPOGFDCJ_00006 7496 4 Oral 0.31 protein_coding synonymous_variant LOW 354G>A Ser118Ser
M0125188 EPOGFDCJ_00006 7976 4 Oral 0.31 protein_coding synonymous_variant LOW 834G>T Ser278Ser
M0125189 EPOGFDCJ_00006 8454 5 Oral 0.38 protein_coding missense_variant MODERATE 1312A>G Thr438Ala
M0125190 EPOGFDCJ_00006 8455 3 Oral 0.23 protein_coding missense_variant MODERATE 1313C>A Thr438Asn
M0125191 EPOGFDCJ_00007 8484 3 Oral 0.23 protein_coding missense_variant MODERATE 143A>G Glu48Gly
M0125192 EPOGFDCJ_00007 8485 3 Oral 0.23 protein_coding missense_variant MODERATE 142G>A Glu48Lys
M0125193 EPOGFDCJ_00007 8502 3 Oral 0.23 protein_coding missense_variant MODERATE 125T>C Phe42Ser
M0125194 EPOGFDCJ_00006 7643 3 Oral 0.23 protein_coding synonymous_variant LOW 501C>T Asp167Asp
M0125195 EPOGFDCJ_00003 2281 3 Oral 0.23 protein_coding synonymous_variant LOW 465C>T Phe155Phe






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term