Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2432
  Reference Plasmid   1111525849768046_bin.37__k141_226070
  Reference Plasmid Size   11877
  Reference Plasmid GC Content   0.37
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0125391 GMGPNJGP_00001 58 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -116T>C None
M0125392 GMGPNJGP_00001 59 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -115C>T None
M0125393 GMGPNJGP_00001 61 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -113T>A None
M0125394 GMGPNJGP_00001 67 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -107A>T None
M0125395 GMGPNJGP_00001 69 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -105A>T None
M0125396 GMGPNJGP_00001 70 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -104C>T None
M0125397 GMGPNJGP_00001 90 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -84G>A None
M0125398 GMGPNJGP_00001 112 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -62T>C None
M0125399 GMGPNJGP_00001 178 3 Oral 0.27 protein_coding missense_variant MODERATE 5G>C Gly2Ala
M0125400 GMGPNJGP_00001 187 4 Oral 0.36 protein_coding missense_variant MODERATE 14C>T Thr5Ile
M0125401 GMGPNJGP_00001 238 4 Oral 0.36 protein_coding stop_gained HIGH 65T>A Leu22*
M0125402 GMGPNJGP_00002 399 3 Oral 0.27 protein_coding synonymous_variant LOW 138C>T Ile46Ile
M0125403 GMGPNJGP_00002 400 3 Oral 0.27 protein_coding missense_variant MODERATE 139C>A His47Asn
M0125404 GMGPNJGP_00002 433 4 Oral 0.36 protein_coding synonymous_variant LOW 172C>T Leu58Leu
M0125405 GMGPNJGP_00002 453 4 Oral 0.36 protein_coding synonymous_variant LOW 192T>A Thr64Thr
M0125406 GMGPNJGP_00002 462 4 Oral 0.36 protein_coding synonymous_variant LOW 201A>G Arg67Arg
M0125407 GMGPNJGP_00002 531 4 Oral 0.36 protein_coding synonymous_variant LOW 270T>C Pro90Pro
M0125408 GMGPNJGP_00002 567 4 Oral 0.36 protein_coding synonymous_variant LOW 306A>T Ser102Ser
M0125409 GMGPNJGP_00002 594 4 Oral 0.36 protein_coding synonymous_variant LOW 333T>C Asp111Asp
M0125410 GMGPNJGP_00002 624 4 Oral 0.36 protein_coding synonymous_variant LOW 363C>G Ser121Ser
M0125411 GMGPNJGP_00002 636 3 Oral 0.27 protein_coding missense_variant MODERATE 375A>C Leu125Phe
M0125412 GMGPNJGP_00002 638 4 Oral 0.36 protein_coding missense_variant MODERATE 377A>G Asn126Ser
M0125413 GMGPNJGP_00002 643 3 Oral 0.27 protein_coding missense_variant MODERATE 382A>T Ile128Phe
M0125414 GMGPNJGP_00002 706 4 Oral 0.36 protein_coding missense_variant MODERATE 445A>G Thr149Ala
M0125415 GMGPNJGP_00002 750 3 Oral 0.27 protein_coding synonymous_variant LOW 489T>C Gly163Gly
M0125416 GMGPNJGP_00002 801 3 Oral 0.27 protein_coding missense_variant MODERATE 540T>G Asn180Lys
M0125417 GMGPNJGP_00002 861 4 Oral 0.36 protein_coding synonymous_variant LOW 600A>C Val200Val
M0125418 GMGPNJGP_00002 868 4 Oral 0.36 protein_coding missense_variant MODERATE 607G>A Asp203Asn
M0125419 GMGPNJGP_00002 885 4 Oral 0.36 protein_coding synonymous_variant LOW 624A>T Val208Val
M0125420 GMGPNJGP_00002 912 3 Oral 0.27 protein_coding synonymous_variant LOW 651C>T Asn217Asn
M0125421 GMGPNJGP_00002 981 4 Oral 0.36 protein_coding synonymous_variant LOW 720T>C Cys240Cys
M0125422 GMGPNJGP_00003 1156 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -2T>C None
M0125423 GMGPNJGP_00003 1262 3 Oral 0.27 protein_coding synonymous_variant LOW 105G>A Leu35Leu
M0125424 GMGPNJGP_00003 1283 4 Oral 0.36 protein_coding synonymous_variant LOW 126C>T Asn42Asn
M0125425 GMGPNJGP_00003 1412 5 Oral 0.45 protein_coding synonymous_variant LOW 255T>A Gly85Gly
M0125426 GMGPNJGP_00003 1474 5 Oral 0.45 protein_coding missense_variant MODERATE 317A>G His106Arg
M0125427 GMGPNJGP_00003 1571 3 Oral 0.27 protein_coding synonymous_variant LOW 414A>G Pro138Pro
M0125428 GMGPNJGP_00003 1572 3 Oral 0.27 protein_coding missense_variant MODERATE 415C>A Leu139Ile
M0125429 GMGPNJGP_00003 1649 4 Oral 0.36 protein_coding synonymous_variant LOW 492A>G Leu164Leu
M0125430 GMGPNJGP_00003 1655 4 Oral 0.36 protein_coding synonymous_variant LOW 498C>T Asp166Asp
M0125431 GMGPNJGP_00003 1697 5 Oral 0.45 protein_coding synonymous_variant LOW 540T>C Ile180Ile
M0125432 GMGPNJGP_00004 1918 5 Oral 0.45 protein_coding synonymous_variant LOW 126G>A Thr42Thr
M0125433 GMGPNJGP_00004 1923 5 Oral 0.45 protein_coding missense_variant MODERATE 131A>G Gln44Arg
M0125434 GMGPNJGP_00004 1931 5 Oral 0.45 protein_coding missense_variant MODERATE 139A>G Asn47Asp
M0125435 GMGPNJGP_00004 1993 4 Oral 0.36 protein_coding synonymous_variant LOW 201G>A Gly67Gly
M0125436 GMGPNJGP_00004 2011 5 Oral 0.45 protein_coding synonymous_variant LOW 219T>C Asn73Asn
M0125437 GMGPNJGP_00004 2091 5 Oral 0.45 protein_coding missense_variant MODERATE 299A>G His100Arg
M0125438 GMGPNJGP_00004 2275 3 Oral 0.27 protein_coding synonymous_variant LOW 483C>T Phe161Phe
M0125439 GMGPNJGP_00004 2276 5 Oral 0.45 protein_coding missense_variant MODERATE 484A>G Ile162Val
M0125440 GMGPNJGP_00004 2449 5 Oral 0.45 protein_coding synonymous_variant LOW 657A>G Glu219Glu
M0125441 GMGPNJGP_00004 2572 3 Oral 0.27 protein_coding synonymous_variant LOW 780C>T Arg260Arg
M0125442 GMGPNJGP_00004 2581 5 Oral 0.45 protein_coding synonymous_variant LOW 789A>G Ser263Ser
M0125443 GMGPNJGP_00004 2590 4 Oral 0.36 protein_coding synonymous_variant LOW 798T>C Asn266Asn
M0125444 GMGPNJGP_00004 2600 4 Oral 0.36 protein_coding synonymous_variant LOW 808T>C Leu270Leu
M0125445 GMGPNJGP_00004 2602 4 Oral 0.36 protein_coding missense_variant MODERATE 810A>C Leu270Phe
M0125446 GMGPNJGP_00004 2606 4 Oral 0.36 protein_coding missense_variant MODERATE 814A>G Ser272Gly
M0125447 GMGPNJGP_00004 2617 3 Oral 0.27 protein_coding synonymous_variant LOW 825T>C Ser275Ser
M0125448 GMGPNJGP_00004 2629 3 Oral 0.27 protein_coding synonymous_variant LOW 837A>G Thr279Thr
M0125449 GMGPNJGP_00004 2633 3 Oral 0.27 protein_coding synonymous_variant LOW 841C>T Leu281Leu
M0125450 GMGPNJGP_00004 2658 5 Oral 0.45 protein_coding missense_variant MODERATE 866G>A Gly289Asp
M0125451 GMGPNJGP_00005 2693 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -141G>A None
M0125452 GMGPNJGP_00005 2757 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -77A>G None
M0125453 GMGPNJGP_00005 2785 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -49C>A None
M0125454 GMGPNJGP_00005 2817 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -17C>T None
M0125455 GMGPNJGP_00005 3097 4 Oral 0.36 protein_coding synonymous_variant LOW 264G>A Gly88Gly
M0125456 GMGPNJGP_00005 3113 3 Oral 0.27 protein_coding missense_variant MODERATE 280C>A Leu94Met
M0125457 GMGPNJGP_00005 3118 5 Oral 0.45 protein_coding synonymous_variant LOW 285A>T Ala95Ala
M0125458 GMGPNJGP_00005 3187 5 Oral 0.45 protein_coding synonymous_variant LOW 354T>A Gly118Gly
M0125459 GMGPNJGP_00005 3277 4 Oral 0.36 protein_coding synonymous_variant LOW 444C>T Asp148Asp
M0125460 GMGPNJGP_00005 3291 3 Oral 0.27 protein_coding missense_variant MODERATE 458A>G Gln153Arg
M0125461 GMGPNJGP_00005 3315 5 Oral 0.45 protein_coding missense_variant MODERATE 482G>A Arg161Lys
M0125462 GMGPNJGP_00005 3429 5 Oral 0.45 protein_coding missense_variant MODERATE 596T>C Val199Ala
M0125463 GMGPNJGP_00005 3445 5 Oral 0.45 protein_coding synonymous_variant LOW 612A>C Ala204Ala
M0125464 GMGPNJGP_00005 3466 3 Oral 0.27 protein_coding synonymous_variant LOW 633C>T Asn211Asn
M0125465 GMGPNJGP_00005 3484 3 Oral 0.27 protein_coding synonymous_variant LOW 651C>A Arg217Arg
M0125466 GMGPNJGP_00005 3560 5 Oral 0.45 protein_coding missense_variant MODERATE 727A>G Thr243Ala
M0125467 GMGPNJGP_00005 3565 3 Oral 0.27 protein_coding synonymous_variant LOW 732C>T Tyr244Tyr
M0125468 GMGPNJGP_00005 3577 5 Oral 0.45 protein_coding synonymous_variant LOW 744A>T Ala248Ala
M0125469 GMGPNJGP_00005 3583 5 Oral 0.45 protein_coding synonymous_variant LOW 750G>A Gln250Gln
M0125470 GMGPNJGP_00005 3620 3 Oral 0.27 protein_coding synonymous_variant LOW 787C>A Arg263Arg
M0125471 GMGPNJGP_00005 3778 3 Oral 0.27 protein_coding synonymous_variant LOW 945A>G Glu315Glu
M0125472 GMGPNJGP_00005 3793 4 Oral 0.36 protein_coding synonymous_variant LOW 960G>T Val320Val
M0125473 GMGPNJGP_00005 3827 4 Oral 0.36 protein_coding missense_variant MODERATE 994A>G Ile332Val
M0125474 GMGPNJGP_00007 4260 6 Oral 0.55 protein_coding synonymous_variant LOW 93A>T Val31Val
M0125475 GMGPNJGP_00007 4281 6 Oral 0.55 protein_coding synonymous_variant LOW 114T>A Ile38Ile
M0125476 GMGPNJGP_00007 4452 6 Oral 0.55 protein_coding synonymous_variant LOW 285T>C Asn95Asn
M0125477 GMGPNJGP_00007 4518 6 Oral 0.55 protein_coding synonymous_variant LOW 351C>G Thr117Thr
M0125478 GMGPNJGP_00007 4659 3 Oral 0.27 protein_coding synonymous_variant LOW 492C>T Arg164Arg
M0125479 GMGPNJGP_00007 4683 4 Oral 0.36 protein_coding synonymous_variant LOW 516G>A Thr172Thr
M0125480 GMGPNJGP_00007 4695 5 Oral 0.45 protein_coding synonymous_variant LOW 528T>C Gly176Gly
M0125481 GMGPNJGP_00007 4701 5 Oral 0.45 protein_coding synonymous_variant LOW 534C>T Thr178Thr
M0125482 GMGPNJGP_00006 5007 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -923C>A None
M0125483 GMGPNJGP_00006 5030 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -946C>T None
M0125484 GMGPNJGP_00006 5033 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -949T>C None
M0125485 GMGPNJGP_00006 5067 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -983A>G None
M0125486 GMGPNJGP_00006 5068 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -984C>T None
M0125487 GMGPNJGP_00006 5072 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -988A>G None
M0125488 GMGPNJGP_00008 5111 4 Oral 0.36 protein_coding synonymous_variant LOW 732T>C Val244Val
M0125489 GMGPNJGP_00008 5119 4 Oral 0.36 protein_coding missense_variant MODERATE 724G>A Ala242Thr
M0125490 GMGPNJGP_00008 5190 5 Oral 0.45 protein_coding missense_variant MODERATE 653T>C Ile218Thr
M0125491 GMGPNJGP_00008 5273 5 Oral 0.45 protein_coding synonymous_variant LOW 570C>T Thr190Thr
M0125492 GMGPNJGP_00008 5315 5 Oral 0.45 protein_coding synonymous_variant LOW 528A>T Leu176Leu
M0125493 GMGPNJGP_00008 5393 6 Oral 0.55 protein_coding synonymous_variant LOW 450T>C Leu150Leu
M0125494 GMGPNJGP_00008 5450 5 Oral 0.45 protein_coding synonymous_variant LOW 393A>G Val131Val
M0125495 GMGPNJGP_00008 5696 6 Oral 0.55 protein_coding synonymous_variant LOW 147T>A Ser49Ser
M0125496 GMGPNJGP_00006 5891 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -1807A>G None
M0125497 GMGPNJGP_00006 5892 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -1808G>T None
M0125498 GMGPNJGP_00006 5894 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1810T>C None
M0125499 GMGPNJGP_00006 5903 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1819G>T None
M0125500 GMGPNJGP_00009 6022 4 Oral 0.36 protein_coding synonymous_variant LOW 39G>A Leu13Leu
M0125501 GMGPNJGP_00009 6023 6 Oral 0.55 protein_coding missense_variant MODERATE 40A>G Thr14Ala
M0125502 GMGPNJGP_00009 6112 4 Oral 0.36 protein_coding synonymous_variant LOW 129T>C Asp43Asp
M0125503 GMGPNJGP_00009 6208 4 Oral 0.36 protein_coding synonymous_variant LOW 225G>A Leu75Leu
M0125504 GMGPNJGP_00009 6247 6 Oral 0.55 protein_coding synonymous_variant LOW 264T>C Cys88Cys
M0125505 GMGPNJGP_00009 6310 3 Oral 0.27 protein_coding synonymous_variant LOW 327C>T Pro109Pro
M0125506 GMGPNJGP_00009 6343 3 Oral 0.27 protein_coding synonymous_variant LOW 360C>T His120His
M0125507 GMGPNJGP_00009 6349 6 Oral 0.55 protein_coding synonymous_variant LOW 366G>A Glu122Glu
M0125508 GMGPNJGP_00009 6352 5 Oral 0.45 protein_coding synonymous_variant LOW 369C>T Gly123Gly
M0125509 GMGPNJGP_00009 6398 6 Oral 0.55 protein_coding synonymous_variant LOW 415C>T Leu139Leu
M0125510 GMGPNJGP_00009 6418 6 Oral 0.55 protein_coding synonymous_variant LOW 435A>C Thr145Thr
M0125511 GMGPNJGP_00009 6535 6 Oral 0.55 protein_coding synonymous_variant LOW 552A>G Leu184Leu
M0125512 GMGPNJGP_00009 6619 4 Oral 0.36 protein_coding synonymous_variant LOW 636T>C Asp212Asp
M0125513 GMGPNJGP_00009 6634 3 Oral 0.27 protein_coding synonymous_variant LOW 651G>A Val217Val
M0125514 GMGPNJGP_00009 6667 5 Oral 0.45 protein_coding synonymous_variant LOW 684C>A Ile228Ile
M0125515 GMGPNJGP_00009 6691 3 Oral 0.27 protein_coding synonymous_variant LOW 708A>G Leu236Leu
M0125516 GMGPNJGP_00009 6706 3 Oral 0.27 protein_coding synonymous_variant LOW 723C>T Asn241Asn
M0125517 GMGPNJGP_00009 6778 6 Oral 0.55 protein_coding synonymous_variant LOW 795A>G Thr265Thr
M0125518 GMGPNJGP_00009 6821 5 Oral 0.45 protein_coding missense_variant MODERATE 838G>T Val280Leu
M0125519 GMGPNJGP_00009 6826 3 Oral 0.27 protein_coding synonymous_variant LOW 843G>A Thr281Thr
M0125520 GMGPNJGP_00009 6832 4 Oral 0.36 protein_coding synonymous_variant LOW 849C>T Asn283Asn
M0125521 GMGPNJGP_00009 6853 4 Oral 0.36 protein_coding synonymous_variant LOW 870G>A Lys290Lys
M0125522 GMGPNJGP_00009 6871 4 Oral 0.36 protein_coding synonymous_variant LOW 888G>A Leu296Leu
M0125523 GMGPNJGP_00009 6946 3 Oral 0.27 protein_coding synonymous_variant LOW 963G>A Lys321Lys
M0125524 GMGPNJGP_00009 6976 6 Oral 0.55 protein_coding synonymous_variant LOW 993T>C Asp331Asp
M0125525 GMGPNJGP_00009 7027 4 Oral 0.36 protein_coding splice_region_variant&stop_retained_variant LOW 1044G>A Ter348Ter
M0125526 GMGPNJGP_00010 7104 4 Oral 0.36 protein_coding missense_variant MODERATE 41C>A Ser14Tyr
M0125527 GMGPNJGP_00010 7118 6 Oral 0.55 protein_coding missense_variant MODERATE 55T>G Ser19Ala
M0125528 GMGPNJGP_00010 7147 3 Oral 0.27 protein_coding synonymous_variant LOW 84T>A Pro28Pro
M0125529 GMGPNJGP_00010 7159 3 Oral 0.27 protein_coding synonymous_variant LOW 96A>G Gln32Gln
M0125530 GMGPNJGP_00010 7161 3 Oral 0.27 protein_coding missense_variant MODERATE 98G>A Ser33Asn
M0125531 GMGPNJGP_00010 7168 4 Oral 0.36 protein_coding synonymous_variant LOW 105C>T Asn35Asn
M0125532 GMGPNJGP_00010 7195 6 Oral 0.55 protein_coding synonymous_variant LOW 132G>A Val44Val
M0125533 GMGPNJGP_00010 7282 5 Oral 0.45 protein_coding synonymous_variant LOW 219A>T Thr73Thr
M0125534 GMGPNJGP_00010 7363 3 Oral 0.27 protein_coding synonymous_variant LOW 300T>C Phe100Phe
M0125535 GMGPNJGP_00010 7366 3 Oral 0.27 protein_coding synonymous_variant LOW 303G>T Val101Val
M0125536 GMGPNJGP_00010 7367 3 Oral 0.27 protein_coding missense_variant MODERATE 304C>G His102Asp
M0125537 GMGPNJGP_00010 7370 3 Oral 0.27 protein_coding missense_variant MODERATE 307C>A Gln103Lys
M0125538 GMGPNJGP_00010 7426 3 Oral 0.27 protein_coding synonymous_variant LOW 363G>A Gly121Gly
M0125539 GMGPNJGP_00010 7507 5 Oral 0.45 protein_coding synonymous_variant LOW 444T>A Thr148Thr
M0125540 GMGPNJGP_00010 7519 4 Oral 0.36 protein_coding synonymous_variant LOW 456A>G Ala152Ala
M0125541 GMGPNJGP_00010 7624 5 Oral 0.45 protein_coding synonymous_variant LOW 561A>G Val187Val
M0125542 GMGPNJGP_00010 7708 4 Oral 0.36 protein_coding synonymous_variant LOW 645G>A Lys215Lys
M0125543 GMGPNJGP_00010 7714 6 Oral 0.55 protein_coding missense_variant MODERATE 651C>G Asp217Glu
M0125544 GMGPNJGP_00010 7734 4 Oral 0.36 protein_coding missense_variant MODERATE 671G>A Arg224Lys
M0125545 GMGPNJGP_00010 7735 4 Oral 0.36 protein_coding synonymous_variant LOW 672A>G Arg224Arg
M0125546 GMGPNJGP_00010 7761 6 Oral 0.55 protein_coding missense_variant MODERATE 698A>G Asn233Ser
M0125547 GMGPNJGP_00006 7776 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3692C>G None
M0125548 GMGPNJGP_00006 7798 7 Oral 0.64 protein_coding upstream_gene_variant MODIFIER -3714C>A None
M0125549 GMGPNJGP_00006 7819 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -3735A>T None
M0125550 GMGPNJGP_00006 7820 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -3736A>C None
M0125551 GMGPNJGP_00002 504 3 Oral 0.27 protein_coding synonymous_variant LOW 243T>C Cys81Cys
M0125552 GMGPNJGP_00002 525 3 Oral 0.27 protein_coding synonymous_variant LOW 264T>C Leu88Leu
M0125553 GMGPNJGP_00004 1978 4 Oral 0.36 protein_coding synonymous_variant LOW 186T>C Asp62Asp
M0125554 GMGPNJGP_00004 1981 4 Oral 0.36 protein_coding synonymous_variant LOW 189T>G Gly63Gly
M0125555 GMGPNJGP_00004 2164 3 Oral 0.27 protein_coding synonymous_variant LOW 372C>T Asn124Asn
M0125556 GMGPNJGP_00004 2191 3 Oral 0.27 protein_coding synonymous_variant LOW 399T>C Tyr133Tyr
M0125557 GMGPNJGP_00004 2356 3 Oral 0.27 protein_coding synonymous_variant LOW 564T>C Phe188Phe
M0125558 GMGPNJGP_00004 2453 3 Oral 0.27 protein_coding synonymous_variant LOW 661C>A Arg221Arg
M0125559 GMGPNJGP_00005 2713 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -121C>A None
M0125560 GMGPNJGP_00005 3739 3 Oral 0.27 protein_coding synonymous_variant LOW 906G>A Val302Val
M0125561 GMGPNJGP_00007 4362 3 Oral 0.27 protein_coding missense_variant MODERATE 195G>C Arg65Ser
M0125562 GMGPNJGP_00007 4404 3 Oral 0.27 protein_coding synonymous_variant LOW 237A>G Pro79Pro
M0125563 GMGPNJGP_00007 4527 3 Oral 0.27 protein_coding synonymous_variant LOW 360A>C Leu120Leu
M0125564 GMGPNJGP_00008 5234 4 Oral 0.36 protein_coding synonymous_variant LOW 609A>G Gln203Gln
M0125565 GMGPNJGP_00008 5249 4 Oral 0.36 protein_coding synonymous_variant LOW 594C>T Ala198Ala
M0125566 GMGPNJGP_00008 5588 3 Oral 0.27 protein_coding synonymous_variant LOW 255T>A Pro85Pro
M0125567 GMGPNJGP_00006 5890 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1806T>C None
M0125568 GMGPNJGP_00010 7094 3 Oral 0.27 protein_coding missense_variant MODERATE 31A>C Ile11Leu
M0125569 GMGPNJGP_00010 7348 3 Oral 0.27 protein_coding synonymous_variant LOW 285C>T Asn95Asn
M0125570 GMGPNJGP_00011 7982 3 Oral 0.27 protein_coding synonymous_variant LOW 162C>T Arg54Arg
M0125571 GMGPNJGP_00011 8099 5 Oral 0.45 protein_coding synonymous_variant LOW 279T>C Ser93Ser
M0125572 GMGPNJGP_00011 8108 5 Oral 0.45 protein_coding synonymous_variant LOW 288A>G Leu96Leu
M0125573 GMGPNJGP_00011 8174 5 Oral 0.45 protein_coding synonymous_variant LOW 354T>C Asn118Asn
M0125574 GMGPNJGP_00011 8198 6 Oral 0.55 protein_coding synonymous_variant LOW 378T>C Asp126Asp
M0125575 GMGPNJGP_00011 8225 6 Oral 0.55 protein_coding synonymous_variant LOW 405T>A Pro135Pro
M0125576 GMGPNJGP_00011 8342 5 Oral 0.45 protein_coding synonymous_variant LOW 522G>A Glu174Glu
M0125577 GMGPNJGP_00011 8366 5 Oral 0.45 protein_coding synonymous_variant LOW 546T>C Ile182Ile
M0125578 GMGPNJGP_00006 8443 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -4359C>T None
M0125579 GMGPNJGP_00006 8466 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -4382C>T None
M0125580 GMGPNJGP_00006 8475 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -4391A>C None
M0125581 GMGPNJGP_00006 8477 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -4393G>T None
M0125582 GMGPNJGP_00006 8480 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -4396A>T None
M0125583 GMGPNJGP_00006 8489 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4405C>T None
M0125584 GMGPNJGP_00006 8533 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -4449C>T None
M0125585 GMGPNJGP_00006 8621 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -4537T>A None
M0125586 GMGPNJGP_00012 8773 4 Oral 0.36 protein_coding missense_variant MODERATE 844A>G Thr282Ala
M0125587 GMGPNJGP_00012 8888 4 Oral 0.36 protein_coding synonymous_variant LOW 729T>C Gly243Gly
M0125588 GMGPNJGP_00012 8897 4 Oral 0.36 protein_coding synonymous_variant LOW 720T>C Phe240Phe
M0125589 GMGPNJGP_00012 8948 4 Oral 0.36 protein_coding synonymous_variant LOW 669T>C Ser223Ser
M0125590 GMGPNJGP_00012 9086 4 Oral 0.36 protein_coding synonymous_variant LOW 531C>T Ser177Ser
M0125591 GMGPNJGP_00012 9200 4 Oral 0.36 protein_coding synonymous_variant LOW 417T>C Ser139Ser
M0125592 GMGPNJGP_00012 9332 3 Oral 0.27 protein_coding synonymous_variant LOW 285A>G Ala95Ala
M0125593 GMGPNJGP_00012 9385 3 Oral 0.27 protein_coding synonymous_variant LOW 232C>T Leu78Leu
M0125594 GMGPNJGP_00012 9407 3 Oral 0.27 protein_coding synonymous_variant LOW 210T>C Gly70Gly
M0125595 GMGPNJGP_00012 9410 3 Oral 0.27 protein_coding synonymous_variant LOW 207C>T Tyr69Tyr
M0125596 GMGPNJGP_00008 9641 4 Oral 0.36 protein_coding upstream_gene_variant MODIFIER -3799T>C None
M0125597 GMGPNJGP_00008 9724 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3882T>C None
M0125598 GMGPNJGP_00008 9726 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3884G>T None
M0125599 GMGPNJGP_00008 9751 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3909A>G None
M0125600 GMGPNJGP_00008 9765 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -3923G>A None
M0125601 GMGPNJGP_00013 9991 5 Oral 0.45 protein_coding synonymous_variant LOW 171T>C Phe57Phe
M0125602 GMGPNJGP_00013 10102 4 Oral 0.36 protein_coding synonymous_variant LOW 282C>T Asp94Asp
M0125603 GMGPNJGP_00013 10107 3 Oral 0.27 protein_coding missense_variant MODERATE 287C>T Thr96Ile
M0125604 GMGPNJGP_00013 10159 5 Oral 0.45 protein_coding synonymous_variant LOW 339T>C Tyr113Tyr
M0125605 GMGPNJGP_00013 10198 5 Oral 0.45 protein_coding synonymous_variant LOW 378A>G Leu126Leu
M0125606 GMGPNJGP_00013 10286 3 Oral 0.27 protein_coding synonymous_variant LOW 466C>T Leu156Leu
M0125607 GMGPNJGP_00013 10327 5 Oral 0.45 protein_coding synonymous_variant LOW 507C>T Ser169Ser
M0125608 GMGPNJGP_00013 10387 3 Oral 0.27 protein_coding synonymous_variant LOW 567T>C Ile189Ile
M0125609 GMGPNJGP_00013 10540 3 Oral 0.27 protein_coding synonymous_variant LOW 720T>C Leu240Leu
M0125610 GMGPNJGP_00013 10594 3 Oral 0.27 protein_coding synonymous_variant LOW 774C>T Asn258Asn
M0125611 GMGPNJGP_00013 10747 5 Oral 0.45 protein_coding synonymous_variant LOW 927T>C Asp309Asp
M0125612 GMGPNJGP_00013 10975 5 Oral 0.45 protein_coding synonymous_variant LOW 1155T>C Ser385Ser
M0125613 GMGPNJGP_00013 10999 3 Oral 0.27 protein_coding synonymous_variant LOW 1179G>A Thr393Thr
M0125614 GMGPNJGP_00013 11195 3 Oral 0.27 protein_coding missense_variant MODERATE 1375C>A His459Asn
M0125615 GMGPNJGP_00013 11203 5 Oral 0.45 protein_coding synonymous_variant LOW 1383T>C Asn461Asn
M0125616 GMGPNJGP_00013 11210 5 Oral 0.45 protein_coding missense_variant MODERATE 1390A>G Ile464Val
M0125617 GMGPNJGP_00013 11260 5 Oral 0.45 protein_coding synonymous_variant LOW 1440T>C Val480Val
M0125618 GMGPNJGP_00013 11332 5 Oral 0.45 protein_coding synonymous_variant LOW 1512G>T Gly504Gly
M0125619 GMGPNJGP_00014 11658 5 Oral 0.45 protein_coding missense_variant MODERATE 243G>C Glu81Asp
M0125620 GMGPNJGP_00014 11664 4 Oral 0.36 protein_coding synonymous_variant LOW 249A>T Thr83Thr
M0125621 GMGPNJGP_00007 4815 3 Oral 0.27 protein_coding synonymous_variant LOW 648C>T Ile216Ile
M0125622 GMGPNJGP_00012 9073 3 Oral 0.27 protein_coding missense_variant MODERATE 544A>T Asn182Tyr
M0125623 GMGPNJGP_00012 9080 3 Oral 0.27 protein_coding synonymous_variant LOW 537T>C Ser179Ser
M0125624 GMGPNJGP_00006 4932 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -848G>A None
M0125625 GMGPNJGP_00008 5306 3 Oral 0.27 protein_coding synonymous_variant LOW 537C>G Val179Val
M0125626 GMGPNJGP_00008 5363 3 Oral 0.27 protein_coding synonymous_variant LOW 480T>C Thr160Thr
M0125627 GMGPNJGP_00008 5402 3 Oral 0.27 protein_coding synonymous_variant LOW 441A>T Ile147Ile
M0125628 GMGPNJGP_00008 5486 3 Oral 0.27 protein_coding synonymous_variant LOW 357A>T Ile119Ile
M0125629 GMGPNJGP_00008 5489 3 Oral 0.27 protein_coding synonymous_variant LOW 354G>A Val118Val
M0125630 GMGPNJGP_00008 5492 3 Oral 0.27 protein_coding synonymous_variant LOW 351C>T Leu117Leu
M0125631 GMGPNJGP_00008 5647 3 Oral 0.27 protein_coding missense_variant MODERATE 196G>A Asp66Asn
M0125632 GMGPNJGP_00010 7154 3 Oral 0.27 protein_coding missense_variant MODERATE 91A>G Thr31Ala
M0125633 GMGPNJGP_00010 7189 3 Oral 0.27 protein_coding synonymous_variant LOW 126T>C Gly42Gly
M0125634 GMGPNJGP_00010 7399 3 Oral 0.27 protein_coding synonymous_variant LOW 336G>A Lys112Lys
M0125635 GMGPNJGP_00011 7877 4 Oral 0.36 protein_coding synonymous_variant LOW 57G>A Ser19Ser
M0125636 GMGPNJGP_00011 7988 4 Oral 0.36 protein_coding synonymous_variant LOW 168A>G Ala56Ala
M0125637 GMGPNJGP_00011 8009 4 Oral 0.36 protein_coding synonymous_variant LOW 189T>C Asp63Asp
M0125638 GMGPNJGP_00011 8024 4 Oral 0.36 protein_coding synonymous_variant LOW 204A>G Lys68Lys
M0125639 GMGPNJGP_00011 8033 4 Oral 0.36 protein_coding synonymous_variant LOW 213T>C Ile71Ile
M0125640 GMGPNJGP_00011 8042 4 Oral 0.36 protein_coding synonymous_variant LOW 222G>A Val74Val
M0125641 GMGPNJGP_00011 8061 3 Oral 0.27 protein_coding missense_variant MODERATE 241G>C Val81Leu
M0125642 GMGPNJGP_00011 8123 4 Oral 0.36 protein_coding synonymous_variant LOW 303C>T Thr101Thr
M0125643 GMGPNJGP_00011 8207 3 Oral 0.27 protein_coding synonymous_variant LOW 387A>C Ile129Ile
M0125644 GMGPNJGP_00011 8222 3 Oral 0.27 protein_coding synonymous_variant LOW 402C>T Asp134Asp
M0125645 GMGPNJGP_00011 8231 3 Oral 0.27 protein_coding synonymous_variant LOW 411G>A Glu137Glu
M0125646 GMGPNJGP_00011 8273 3 Oral 0.27 protein_coding synonymous_variant LOW 453C>A Gly151Gly
M0125647 GMGPNJGP_00011 8297 3 Oral 0.27 protein_coding missense_variant MODERATE 477C>G Asp159Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
GMGPNJGP_00002 EFC71504.1|GT11 92.5 1.52e-204 1 292 1 1
GMGPNJGP_00004 EFC71503.1|GT2 93.1 6.59e-193 1 288 0.9965 0.9965
GMGPNJGP_00005 EFC71502.1|GT4 92.7 2.92e-256 1 372 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term