Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2443
  Reference Plasmid   1111525849768046_bin.37__k141_38309
  Reference Plasmid Size   3939
  Reference Plasmid GC Content   0.39
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0126400 DLIJKLBG_00001 2737 4 Oral 0.44 protein_coding downstream_gene_variant MODIFIER *2357A>G None
M0126401 DLIJKLBG_00001 2766 4 Oral 0.44 protein_coding downstream_gene_variant MODIFIER *2386T>C None
M0126402 DLIJKLBG_00001 2782 4 Oral 0.44 protein_coding downstream_gene_variant MODIFIER *2402C>T None
M0126403 DLIJKLBG_00001 2783 4 Oral 0.44 protein_coding downstream_gene_variant MODIFIER *2403T>A None
M0126404 DLIJKLBG_00001 2784 4 Oral 0.44 protein_coding downstream_gene_variant MODIFIER *2404C>T None
M0126405 DLIJKLBG_00001 2787 4 Oral 0.44 protein_coding downstream_gene_variant MODIFIER *2407T>C None
M0126406 DLIJKLBG_00001 2928 7 Oral 0.78 protein_coding downstream_gene_variant MODIFIER *2548T>C None
M0126407 DLIJKLBG_00001 3195 7 Oral 0.78 protein_coding downstream_gene_variant MODIFIER *2815G>A None
M0126408 DLIJKLBG_00001 3207 7 Oral 0.78 protein_coding downstream_gene_variant MODIFIER *2827T>C None
M0126409 DLIJKLBG_00001 3558 7 Oral 0.78 protein_coding downstream_gene_variant MODIFIER *3178A>G None
M0126410 DLIJKLBG_00001 3611 7 Oral 0.78 protein_coding downstream_gene_variant MODIFIER *3231T>C None
M0126411 DLIJKLBG_00001 3626 7 Oral 0.78 protein_coding downstream_gene_variant MODIFIER *3246C>A None
M0126412 DLIJKLBG_00001 3789 6 Oral 0.67 protein_coding downstream_gene_variant MODIFIER *3409A>G None
M0126413 DLIJKLBG_00001 3273 3 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *2893T>C None
M0126414 DLIJKLBG_00001 3315 3 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *2935G>A None
M0126415 DLIJKLBG_00001 3660 3 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *3280T>C None
M0126416 DLIJKLBG_00001 3701 3 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *3321T>C None
M0126417 DLIJKLBG_00001 3759 3 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *3379A>G None
M0126418 DLIJKLBG_00001 3156 3 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *2776T>C None
M0126419 DLIJKLBG_00001 3417 3 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *3037T>C None
M0126420 DLIJKLBG_00001 3462 3 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *3082C>G None
M0126421 DLIJKLBG_00001 3492 3 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *3112T>C None
M0126422 DLIJKLBG_00001 3516 3 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *3136T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term