Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2459
  Reference Plasmid   1111525849768046_bin.37__k141_59702
  Reference Plasmid Size   9806
  Reference Plasmid GC Content   0.39
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0127605 JJIMPLAA_00001 43 5 Oral 0.45 protein_coding downstream_gene_variant MODIFIER *251G>A None
M0127606 JJIMPLAA_00001 124 5 Oral 0.45 protein_coding downstream_gene_variant MODIFIER *170G>C None
M0127607 JJIMPLAA_00001 128 5 Oral 0.45 protein_coding downstream_gene_variant MODIFIER *166C>A None
M0127608 JJIMPLAA_00001 244 4 Oral 0.36 protein_coding downstream_gene_variant MODIFIER *50T>A None
M0127609 JJIMPLAA_00001 246 3 Oral 0.27 protein_coding downstream_gene_variant MODIFIER *48C>T None
M0127610 JJIMPLAA_00001 261 4 Oral 0.36 protein_coding downstream_gene_variant MODIFIER *33A>T None
M0127611 JJIMPLAA_00001 266 5 Oral 0.45 protein_coding downstream_gene_variant MODIFIER *28T>A None
M0127612 JJIMPLAA_00001 293 4 Oral 0.36 protein_coding downstream_gene_variant MODIFIER *1C>T None
M0127613 JJIMPLAA_00001 360 3 Oral 0.27 protein_coding synonymous_variant LOW 1083C>T Ser361Ser
M0127614 JJIMPLAA_00001 417 3 Oral 0.27 protein_coding synonymous_variant LOW 1026C>T Ser342Ser
M0127615 JJIMPLAA_00001 501 4 Oral 0.36 protein_coding synonymous_variant LOW 942T>A Val314Val
M0127616 JJIMPLAA_00001 567 4 Oral 0.36 protein_coding synonymous_variant LOW 876A>T Ala292Ala
M0127617 JJIMPLAA_00001 673 4 Oral 0.36 protein_coding missense_variant MODERATE 770C>G Thr257Ser
M0127618 JJIMPLAA_00001 741 5 Oral 0.45 protein_coding synonymous_variant LOW 702G>A Gln234Gln
M0127619 JJIMPLAA_00001 792 5 Oral 0.45 protein_coding synonymous_variant LOW 651G>A Gly217Gly
M0127620 JJIMPLAA_00001 825 5 Oral 0.45 protein_coding synonymous_variant LOW 618G>A Leu206Leu
M0127621 JJIMPLAA_00001 889 5 Oral 0.45 protein_coding missense_variant MODERATE 554T>C Val185Ala
M0127622 JJIMPLAA_00001 938 3 Oral 0.27 protein_coding missense_variant MODERATE 505T>A Ser169Thr
M0127623 JJIMPLAA_00001 939 3 Oral 0.27 protein_coding synonymous_variant LOW 504C>T Ile168Ile
M0127624 JJIMPLAA_00001 942 5 Oral 0.45 protein_coding synonymous_variant LOW 501G>T Ser167Ser
M0127625 JJIMPLAA_00001 1011 5 Oral 0.45 protein_coding synonymous_variant LOW 432A>G Ala144Ala
M0127626 JJIMPLAA_00001 1098 5 Oral 0.45 protein_coding synonymous_variant LOW 345G>A Glu115Glu
M0127627 JJIMPLAA_00001 1131 3 Oral 0.27 protein_coding synonymous_variant LOW 312C>T Asn104Asn
M0127628 JJIMPLAA_00001 1218 5 Oral 0.45 protein_coding synonymous_variant LOW 225T>C Phe75Phe
M0127629 JJIMPLAA_00001 1513 6 Oral 0.55 protein_coding upstream_gene_variant MODIFIER -71G>A None
M0127630 JJIMPLAA_00002 1587 6 Oral 0.55 protein_coding synonymous_variant LOW 1626C>T His542His
M0127631 JJIMPLAA_00002 1589 6 Oral 0.55 protein_coding missense_variant MODERATE 1624C>A His542Asn
M0127632 JJIMPLAA_00002 1590 6 Oral 0.55 protein_coding synonymous_variant LOW 1623G>A Gly541Gly
M0127633 JJIMPLAA_00002 1698 6 Oral 0.55 protein_coding synonymous_variant LOW 1515A>T Ile505Ile
M0127634 JJIMPLAA_00002 1722 6 Oral 0.55 protein_coding synonymous_variant LOW 1491T>C Gly497Gly
M0127635 JJIMPLAA_00002 1746 3 Oral 0.27 protein_coding synonymous_variant LOW 1467T>G Ser489Ser
M0127636 JJIMPLAA_00002 1791 6 Oral 0.55 protein_coding synonymous_variant LOW 1422T>C Tyr474Tyr
M0127637 JJIMPLAA_00002 1908 6 Oral 0.55 protein_coding synonymous_variant LOW 1305C>T Pro435Pro
M0127638 JJIMPLAA_00002 2328 3 Oral 0.27 protein_coding missense_variant MODERATE 885T>A Asp295Glu
M0127639 JJIMPLAA_00002 2370 3 Oral 0.27 protein_coding synonymous_variant LOW 843C>A Leu281Leu
M0127640 JJIMPLAA_00002 2457 3 Oral 0.27 protein_coding synonymous_variant LOW 756C>T Ala252Ala
M0127641 JJIMPLAA_00002 2499 4 Oral 0.36 protein_coding synonymous_variant LOW 714T>C Thr238Thr
M0127642 JJIMPLAA_00002 2503 4 Oral 0.36 protein_coding missense_variant MODERATE 710T>A Phe237Tyr
M0127643 JJIMPLAA_00002 2544 5 Oral 0.45 protein_coding synonymous_variant LOW 669A>C Gly223Gly
M0127644 JJIMPLAA_00002 2547 4 Oral 0.36 protein_coding synonymous_variant LOW 666T>C Asn222Asn
M0127645 JJIMPLAA_00002 2586 3 Oral 0.27 protein_coding synonymous_variant LOW 627G>A Glu209Glu
M0127646 JJIMPLAA_00002 2607 6 Oral 0.55 protein_coding synonymous_variant LOW 606T>A Gly202Gly
M0127647 JJIMPLAA_00002 2670 4 Oral 0.36 protein_coding synonymous_variant LOW 543A>G Lys181Lys
M0127648 JJIMPLAA_00002 2766 3 Oral 0.27 protein_coding synonymous_variant LOW 447T>C Asn149Asn
M0127649 JJIMPLAA_00002 2790 3 Oral 0.27 protein_coding synonymous_variant LOW 423C>T Ile141Ile
M0127650 JJIMPLAA_00002 2889 4 Oral 0.36 protein_coding synonymous_variant LOW 324T>C Leu108Leu
M0127651 JJIMPLAA_00002 2983 5 Oral 0.45 protein_coding missense_variant MODERATE 230T>A Leu77His
M0127652 JJIMPLAA_00002 2991 5 Oral 0.45 protein_coding synonymous_variant LOW 222G>A Gln74Gln
M0127653 JJIMPLAA_00002 2994 4 Oral 0.36 protein_coding synonymous_variant LOW 219T>C Arg73Arg
M0127654 JJIMPLAA_00002 3006 6 Oral 0.55 protein_coding missense_variant MODERATE 207C>A Asp69Glu
M0127655 JJIMPLAA_00002 3060 5 Oral 0.45 protein_coding synonymous_variant LOW 153A>G Lys51Lys
M0127656 JJIMPLAA_00002 3071 5 Oral 0.45 protein_coding synonymous_variant LOW 142T>C Leu48Leu
M0127657 JJIMPLAA_00001 3273 6 Oral 0.55 protein_coding upstream_gene_variant MODIFIER -1831G>A None
M0127658 JJIMPLAA_00001 3275 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1833G>A None
M0127659 JJIMPLAA_00001 3318 3 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1876A>G None
M0127660 JJIMPLAA_00001 3326 6 Oral 0.55 protein_coding upstream_gene_variant MODIFIER -1884G>A None
M0127661 JJIMPLAA_00001 3347 6 Oral 0.55 protein_coding upstream_gene_variant MODIFIER -1905A>C None
M0127662 JJIMPLAA_00001 3350 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -1908T>C None
M0127663 JJIMPLAA_00003 3548 3 Oral 0.27 protein_coding synonymous_variant LOW 1128A>G Gln376Gln
M0127664 JJIMPLAA_00003 3602 3 Oral 0.27 protein_coding synonymous_variant LOW 1074A>G Arg358Arg
M0127665 JJIMPLAA_00003 3603 3 Oral 0.27 protein_coding missense_variant MODERATE 1073G>A Arg358Gln
M0127666 JJIMPLAA_00003 3803 3 Oral 0.27 protein_coding synonymous_variant LOW 873T>A Ala291Ala
M0127667 JJIMPLAA_00003 3809 4 Oral 0.36 protein_coding synonymous_variant LOW 867G>A Lys289Lys
M0127668 JJIMPLAA_00003 3836 4 Oral 0.36 protein_coding synonymous_variant LOW 840C>T Asn280Asn
M0127669 JJIMPLAA_00003 3866 4 Oral 0.36 protein_coding synonymous_variant LOW 810T>A Thr270Thr
M0127670 JJIMPLAA_00003 3872 3 Oral 0.27 protein_coding synonymous_variant LOW 804T>C Val268Val
M0127671 JJIMPLAA_00003 3874 3 Oral 0.27 protein_coding missense_variant MODERATE 802G>A Val268Ile
M0127672 JJIMPLAA_00003 3884 7 Oral 0.64 protein_coding synonymous_variant LOW 792T>C Asn264Asn
M0127673 JJIMPLAA_00003 3905 4 Oral 0.36 protein_coding synonymous_variant LOW 771G>C Gly257Gly
M0127674 JJIMPLAA_00003 3971 3 Oral 0.27 protein_coding synonymous_variant LOW 705T>C Asn235Asn
M0127675 JJIMPLAA_00003 4037 7 Oral 0.64 protein_coding synonymous_variant LOW 639A>G Leu213Leu
M0127676 JJIMPLAA_00003 4124 4 Oral 0.36 protein_coding missense_variant MODERATE 552A>T Leu184Phe
M0127677 JJIMPLAA_00003 4126 4 Oral 0.36 protein_coding synonymous_variant LOW 550T>C Leu184Leu
M0127678 JJIMPLAA_00003 4160 4 Oral 0.36 protein_coding synonymous_variant LOW 516T>C Tyr172Tyr
M0127679 JJIMPLAA_00003 4184 3 Oral 0.27 protein_coding synonymous_variant LOW 492A>G Gln164Gln
M0127680 JJIMPLAA_00003 4274 7 Oral 0.64 protein_coding missense_variant MODERATE 402A>T Glu134Asp
M0127681 JJIMPLAA_00003 4367 7 Oral 0.64 protein_coding synonymous_variant LOW 309T>C Phe103Phe
M0127682 JJIMPLAA_00003 4547 4 Oral 0.36 protein_coding missense_variant MODERATE 129A>T Glu43Asp
M0127683 JJIMPLAA_00003 4628 4 Oral 0.36 protein_coding synonymous_variant LOW 48C>T Phe16Phe
M0127684 JJIMPLAA_00004 4725 6 Oral 0.55 protein_coding synonymous_variant LOW 1434T>C His478His
M0127685 JJIMPLAA_00004 4802 3 Oral 0.27 protein_coding missense_variant MODERATE 1357A>G Thr453Ala
M0127686 JJIMPLAA_00004 4803 4 Oral 0.36 protein_coding synonymous_variant LOW 1356C>T Asn452Asn
M0127687 JJIMPLAA_00004 4913 7 Oral 0.64 protein_coding missense_variant MODERATE 1246A>G Thr416Ala
M0127688 JJIMPLAA_00004 4932 3 Oral 0.27 protein_coding synonymous_variant LOW 1227T>C Asn409Asn
M0127689 JJIMPLAA_00004 4947 5 Oral 0.45 protein_coding synonymous_variant LOW 1212C>T Tyr404Tyr
M0127690 JJIMPLAA_00004 4965 5 Oral 0.45 protein_coding synonymous_variant LOW 1194A>G Val398Val
M0127691 JJIMPLAA_00004 4980 3 Oral 0.27 protein_coding synonymous_variant LOW 1179A>G Lys393Lys
M0127692 JJIMPLAA_00004 4997 5 Oral 0.45 protein_coding synonymous_variant LOW 1162C>T Leu388Leu
M0127693 JJIMPLAA_00004 5102 4 Oral 0.36 protein_coding missense_variant MODERATE 1057A>G Thr353Ala
M0127694 JJIMPLAA_00004 5121 8 Oral 0.73 protein_coding synonymous_variant LOW 1038C>T Ala346Ala
M0127695 JJIMPLAA_00004 5195 8 Oral 0.73 protein_coding missense_variant MODERATE 964T>C Cys322Arg
M0127696 JJIMPLAA_00004 5485 8 Oral 0.73 protein_coding missense_variant MODERATE 674T>C Val225Ala
M0127697 JJIMPLAA_00004 5496 6 Oral 0.55 protein_coding synonymous_variant LOW 663A>G Lys221Lys
M0127698 JJIMPLAA_00004 5562 8 Oral 0.73 protein_coding synonymous_variant LOW 597G>A Thr199Thr
M0127699 JJIMPLAA_00004 5760 4 Oral 0.36 protein_coding missense_variant MODERATE 399A>T Leu133Phe
M0127700 JJIMPLAA_00004 5802 3 Oral 0.27 protein_coding synonymous_variant LOW 357G>A Ser119Ser
M0127701 JJIMPLAA_00004 5808 6 Oral 0.55 protein_coding synonymous_variant LOW 351T>A Ala117Ala
M0127702 JJIMPLAA_00004 5838 4 Oral 0.36 protein_coding synonymous_variant LOW 321A>T Ser107Ser
M0127703 JJIMPLAA_00004 5841 4 Oral 0.36 protein_coding synonymous_variant LOW 318G>T Thr106Thr
M0127704 JJIMPLAA_00004 5867 3 Oral 0.27 protein_coding missense_variant MODERATE 292T>G Ser98Ala
M0127705 JJIMPLAA_00004 5895 5 Oral 0.45 protein_coding synonymous_variant LOW 264C>T Tyr88Tyr
M0127706 JJIMPLAA_00004 5955 7 Oral 0.64 protein_coding synonymous_variant LOW 204A>T Gly68Gly
M0127707 JJIMPLAA_00005 6252 6 Oral 0.55 protein_coding synonymous_variant LOW 3285T>C Arg1095Arg
M0127708 JJIMPLAA_00005 6303 6 Oral 0.55 protein_coding synonymous_variant LOW 3234T>C Arg1078Arg
M0127709 JJIMPLAA_00005 6306 7 Oral 0.64 protein_coding synonymous_variant LOW 3231G>A Lys1077Lys
M0127710 JJIMPLAA_00005 6390 7 Oral 0.64 protein_coding synonymous_variant LOW 3147T>C Arg1049Arg
M0127711 JJIMPLAA_00005 6414 7 Oral 0.64 protein_coding synonymous_variant LOW 3123T>C Gly1041Gly
M0127712 JJIMPLAA_00005 6543 7 Oral 0.64 protein_coding synonymous_variant LOW 2994G>A Val998Val
M0127713 JJIMPLAA_00005 6609 6 Oral 0.55 protein_coding synonymous_variant LOW 2928T>C Ser976Ser
M0127714 JJIMPLAA_00005 6642 7 Oral 0.64 protein_coding synonymous_variant LOW 2895T>C Gly965Gly
M0127715 JJIMPLAA_00005 6687 4 Oral 0.36 protein_coding synonymous_variant LOW 2850C>T Gly950Gly
M0127716 JJIMPLAA_00005 6726 4 Oral 0.36 protein_coding synonymous_variant LOW 2811T>C Asp937Asp
M0127717 JJIMPLAA_00005 6972 5 Oral 0.45 protein_coding synonymous_variant LOW 2565T>A Ala855Ala
M0127718 JJIMPLAA_00005 7031 7 Oral 0.64 protein_coding synonymous_variant LOW 2506T>C Leu836Leu
M0127719 JJIMPLAA_00005 7092 3 Oral 0.27 protein_coding synonymous_variant LOW 2445C>T Val815Val
M0127720 JJIMPLAA_00005 7095 3 Oral 0.27 protein_coding synonymous_variant LOW 2442T>C Asp814Asp
M0127721 JJIMPLAA_00005 7107 7 Oral 0.64 protein_coding synonymous_variant LOW 2430T>C Ser810Ser
M0127722 JJIMPLAA_00005 7137 6 Oral 0.55 protein_coding synonymous_variant LOW 2400C>T Asp800Asp
M0127723 JJIMPLAA_00005 7179 4 Oral 0.36 protein_coding synonymous_variant LOW 2358T>C Phe786Phe
M0127724 JJIMPLAA_00005 7233 5 Oral 0.45 protein_coding synonymous_variant LOW 2304A>C Ala768Ala
M0127725 JJIMPLAA_00005 7461 7 Oral 0.64 protein_coding synonymous_variant LOW 2076A>G Thr692Thr
M0127726 JJIMPLAA_00005 7626 7 Oral 0.64 protein_coding synonymous_variant LOW 1911G>A Leu637Leu
M0127727 JJIMPLAA_00005 7695 3 Oral 0.27 protein_coding synonymous_variant LOW 1842C>T Ser614Ser
M0127728 JJIMPLAA_00005 7722 7 Oral 0.64 protein_coding synonymous_variant LOW 1815A>T Thr605Thr
M0127729 JJIMPLAA_00005 7734 3 Oral 0.27 protein_coding synonymous_variant LOW 1803C>A Thr601Thr
M0127730 JJIMPLAA_00005 8076 5 Oral 0.45 protein_coding synonymous_variant LOW 1461T>C Asn487Asn
M0127731 JJIMPLAA_00005 8097 7 Oral 0.64 protein_coding synonymous_variant LOW 1440T>C Asn480Asn
M0127732 JJIMPLAA_00005 8130 5 Oral 0.45 protein_coding synonymous_variant LOW 1407C>T Gly469Gly
M0127733 JJIMPLAA_00005 8244 5 Oral 0.45 protein_coding synonymous_variant LOW 1293G>A Lys431Lys
M0127734 JJIMPLAA_00005 8424 6 Oral 0.55 protein_coding synonymous_variant LOW 1113T>C Asn371Asn
M0127735 JJIMPLAA_00005 8463 7 Oral 0.64 protein_coding synonymous_variant LOW 1074G>A Thr358Thr
M0127736 JJIMPLAA_00005 8487 3 Oral 0.27 protein_coding synonymous_variant LOW 1050A>T Ser350Ser
M0127737 JJIMPLAA_00005 8520 7 Oral 0.64 protein_coding synonymous_variant LOW 1017A>T Ala339Ala
M0127738 JJIMPLAA_00005 8601 7 Oral 0.64 protein_coding synonymous_variant LOW 936T>C Leu312Leu
M0127739 JJIMPLAA_00005 8754 7 Oral 0.64 protein_coding synonymous_variant LOW 783C>G Val261Val
M0127740 JJIMPLAA_00005 9294 7 Oral 0.64 protein_coding synonymous_variant LOW 243T>C Thr81Thr
M0127741 JJIMPLAA_00005 9336 7 Oral 0.64 protein_coding synonymous_variant LOW 201C>T Ile67Ile
M0127742 JJIMPLAA_00005 9354 6 Oral 0.55 protein_coding synonymous_variant LOW 183G>A Lys61Lys
M0127743 JJIMPLAA_00005 9434 4 Oral 0.36 protein_coding missense_variant MODERATE 103G>A Val35Ile
M0127744 JJIMPLAA_00004 9737 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -3579T>C None
M0127745 JJIMPLAA_00004 9746 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -3588G>A None
M0127746 JJIMPLAA_00004 9771 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -3613T>A None
M0127747 JJIMPLAA_00004 9773 5 Oral 0.45 protein_coding upstream_gene_variant MODIFIER -3615T>C None
M0127748 JJIMPLAA_00004 5343 6 Oral 0.55 protein_coding missense_variant MODERATE 816T>G Asn272Lys
M0127749 JJIMPLAA_00004 5721 4 Oral 0.36 protein_coding synonymous_variant LOW 438T>C Arg146Arg
M0127750 JJIMPLAA_00005 6447 4 Oral 0.36 protein_coding synonymous_variant LOW 3090T>C Asp1030Asp
M0127751 JJIMPLAA_00005 7260 4 Oral 0.36 protein_coding synonymous_variant LOW 2277A>G Val759Val
M0127752 JJIMPLAA_00005 7446 5 Oral 0.45 protein_coding synonymous_variant LOW 2091G>A Thr697Thr
M0127753 JJIMPLAA_00005 7617 3 Oral 0.27 protein_coding synonymous_variant LOW 1920C>T His640His
M0127754 JJIMPLAA_00005 8295 5 Oral 0.45 protein_coding synonymous_variant LOW 1242T>C Asn414Asn
M0127755 JJIMPLAA_00005 8298 5 Oral 0.45 protein_coding synonymous_variant LOW 1239C>T Tyr413Tyr
M0127756 JJIMPLAA_00005 8913 5 Oral 0.45 protein_coding synonymous_variant LOW 624T>C Asp208Asp
M0127757 JJIMPLAA_00005 9207 5 Oral 0.45 protein_coding synonymous_variant LOW 330C>T Gly110Gly
M0127758 JJIMPLAA_00004 5379 3 Oral 0.27 protein_coding synonymous_variant LOW 780C>T Ser260Ser
M0127759 JJIMPLAA_00004 5247 4 Oral 0.36 protein_coding synonymous_variant LOW 912C>A Ala304Ala
M0127760 JJIMPLAA_00004 5295 5 Oral 0.45 protein_coding synonymous_variant LOW 864A>G Leu288Leu
M0127761 JJIMPLAA_00004 5415 3 Oral 0.27 protein_coding synonymous_variant LOW 744C>T Ala248Ala
M0127762 JJIMPLAA_00004 5928 3 Oral 0.27 protein_coding synonymous_variant LOW 231T>C Gly77Gly
M0127763 JJIMPLAA_00005 6786 4 Oral 0.36 protein_coding synonymous_variant LOW 2751C>T Pro917Pro
M0127764 JJIMPLAA_00005 6798 4 Oral 0.36 protein_coding synonymous_variant LOW 2739G>T Ser913Ser
M0127765 JJIMPLAA_00002 2564 4 Oral 0.36 protein_coding missense_variant MODERATE 649A>G Ile217Val
M0127766 JJIMPLAA_00003 4379 5 Oral 0.45 protein_coding synonymous_variant LOW 297C>T Pro99Pro
M0127767 JJIMPLAA_00003 4511 3 Oral 0.27 protein_coding synonymous_variant LOW 165A>C Ile55Ile
M0127768 JJIMPLAA_00003 4255 3 Oral 0.27 protein_coding missense_variant MODERATE 421A>G Ile141Val
M0127769 JJIMPLAA_00004 5598 4 Oral 0.36 protein_coding synonymous_variant LOW 561G>A Lys187Lys
M0127770 JJIMPLAA_00004 6089 3 Oral 0.27 protein_coding missense_variant MODERATE 70T>C Phe24Leu
M0127771 JJIMPLAA_00005 6336 3 Oral 0.27 protein_coding synonymous_variant LOW 3201C>T Arg1067Arg
M0127772 JJIMPLAA_00005 7047 3 Oral 0.27 protein_coding synonymous_variant LOW 2490T>C Asn830Asn
M0127773 JJIMPLAA_00005 8892 4 Oral 0.36 protein_coding synonymous_variant LOW 645G>A Val215Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term