Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2461
  Reference Plasmid   1111525849768046_bin.37__k141_64829
  Reference Plasmid Size   14948
  Reference Plasmid GC Content   0.38
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0127777 CNFJOIOM_00007 5719 4 Oral 0.25 protein_coding synonymous_variant LOW 558T>C Leu186Leu
M0127778 CNFJOIOM_00007 5773 5 Oral 0.31 protein_coding synonymous_variant LOW 612A>T Ala204Ala
M0127779 CNFJOIOM_00007 5887 6 Oral 0.38 protein_coding synonymous_variant LOW 726C>T Val242Val
M0127780 CNFJOIOM_00007 5890 6 Oral 0.38 protein_coding synonymous_variant LOW 729A>G Val243Val
M0127781 CNFJOIOM_00007 5914 3 Oral 0.19 protein_coding synonymous_variant LOW 753T>C Phe251Phe
M0127782 CNFJOIOM_00007 5931 6 Oral 0.38 protein_coding missense_variant MODERATE 770G>A Arg257Lys
M0127783 CNFJOIOM_00007 5966 3 Oral 0.19 protein_coding missense_variant MODERATE 805G>A Val269Ile
M0127784 CNFJOIOM_00008 6055 4 Oral 0.25 protein_coding synonymous_variant LOW 27A>C Ile9Ile
M0127785 CNFJOIOM_00008 6181 6 Oral 0.38 protein_coding synonymous_variant LOW 153T>A Ala51Ala
M0127786 CNFJOIOM_00008 6277 6 Oral 0.38 protein_coding synonymous_variant LOW 249A>G Gly83Gly
M0127787 CNFJOIOM_00009 7212 5 Oral 0.31 protein_coding synonymous_variant LOW 312G>A Lys104Lys
M0127788 CNFJOIOM_00009 7584 4 Oral 0.25 protein_coding synonymous_variant LOW 684T>C His228His
M0127789 CNFJOIOM_00009 7614 4 Oral 0.25 protein_coding synonymous_variant LOW 714A>G Glu238Glu
M0127790 CNFJOIOM_00009 7626 4 Oral 0.25 protein_coding synonymous_variant LOW 726C>A Ile242Ile
M0127791 CNFJOIOM_00009 7631 4 Oral 0.25 protein_coding missense_variant MODERATE 731G>A Ser244Asn
M0127792 CNFJOIOM_00009 7644 4 Oral 0.25 protein_coding synonymous_variant LOW 744T>C Thr248Thr
M0127793 CNFJOIOM_00009 7690 4 Oral 0.25 protein_coding synonymous_variant LOW 790T>C Leu264Leu
M0127794 CNFJOIOM_00009 7758 4 Oral 0.25 protein_coding synonymous_variant LOW 858T>C Asp286Asp
M0127795 CNFJOIOM_00009 7767 3 Oral 0.19 protein_coding synonymous_variant LOW 867C>T Arg289Arg
M0127796 CNFJOIOM_00009 7771 3 Oral 0.19 protein_coding missense_variant MODERATE 871A>G Arg291Gly
M0127797 CNFJOIOM_00009 7785 5 Oral 0.31 protein_coding synonymous_variant LOW 885C>T Cys295Cys
M0127798 CNFJOIOM_00009 7797 4 Oral 0.25 protein_coding synonymous_variant LOW 897T>C Thr299Thr
M0127799 CNFJOIOM_00009 7821 5 Oral 0.31 protein_coding synonymous_variant LOW 921A>C Thr307Thr
M0127800 CNFJOIOM_00009 7890 6 Oral 0.38 protein_coding synonymous_variant LOW 990T>C Tyr330Tyr
M0127801 CNFJOIOM_00009 7926 6 Oral 0.38 protein_coding synonymous_variant LOW 1026T>C Phe342Phe
M0127802 CNFJOIOM_00009 7983 3 Oral 0.19 protein_coding synonymous_variant LOW 1083G>A Leu361Leu
M0127803 CNFJOIOM_00010 8249 4 Oral 0.25 protein_coding synonymous_variant LOW 183C>T Cys61Cys
M0127804 CNFJOIOM_00010 8255 4 Oral 0.25 protein_coding synonymous_variant LOW 189T>C Thr63Thr
M0127805 CNFJOIOM_00010 8294 3 Oral 0.19 protein_coding synonymous_variant LOW 228C>T Ala76Ala
M0127806 CNFJOIOM_00010 8300 6 Oral 0.38 protein_coding synonymous_variant LOW 234A>G Glu78Glu
M0127807 CNFJOIOM_00010 8315 5 Oral 0.31 protein_coding synonymous_variant LOW 249A>G Arg83Arg
M0127808 CNFJOIOM_00010 8318 5 Oral 0.31 protein_coding synonymous_variant LOW 252A>G Thr84Thr
M0127809 CNFJOIOM_00010 8336 6 Oral 0.38 protein_coding synonymous_variant LOW 270A>C Gly90Gly
M0127810 CNFJOIOM_00010 8378 4 Oral 0.25 protein_coding synonymous_variant LOW 312C>T Tyr104Tyr
M0127811 CNFJOIOM_00010 8381 5 Oral 0.31 protein_coding synonymous_variant LOW 315C>T Asp105Asp
M0127812 CNFJOIOM_00011 8573 5 Oral 0.31 protein_coding synonymous_variant LOW 1089A>G Lys363Lys
M0127813 CNFJOIOM_00011 8585 5 Oral 0.31 protein_coding synonymous_variant LOW 1077A>T Gly359Gly
M0127814 CNFJOIOM_00011 8588 5 Oral 0.31 protein_coding synonymous_variant LOW 1074C>T Ser358Ser
M0127815 CNFJOIOM_00011 12867 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3206A>T None
M0127816 CNFJOIOM_00011 12891 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3230T>G None
M0127817 CNFJOIOM_00011 12892 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3231C>T None
M0127818 CNFJOIOM_00011 12893 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3232A>G None
M0127819 CNFJOIOM_00011 12894 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3233C>T None
M0127820 CNFJOIOM_00011 12927 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3266T>G None
M0127821 CNFJOIOM_00011 12957 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3296T>A None
M0127822 CNFJOIOM_00011 12983 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3322G>A None
M0127823 CNFJOIOM_00011 12985 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -3324C>T None
M0127824 CNFJOIOM_00011 12990 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3329C>A None
M0127825 CNFJOIOM_00011 13226 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -3565T>G None
M0127826 CNFJOIOM_00011 13482 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -3821C>A None
M0127827 CNFJOIOM_00011 13545 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -3884G>A None
M0127828 CNFJOIOM_00011 13647 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -3986G>C None
M0127829 CNFJOIOM_00011 13662 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -4001T>A None
M0127830 CNFJOIOM_00011 14124 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -4463C>A None
M0127831 CNFJOIOM_00011 14130 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -4469G>A None
M0127832 CNFJOIOM_00011 14163 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -4502T>G None
M0127833 CNFJOIOM_00011 14180 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -4519A>G None
M0127834 CNFJOIOM_00011 14235 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -4574A>G None
M0127835 CNFJOIOM_00011 14271 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -4610A>T None
M0127836 CNFJOIOM_00011 14281 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -4620T>A None
M0127837 CNFJOIOM_00011 14532 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -4871G>A None
M0127838 CNFJOIOM_00011-CHR_END 14865 4 Oral 0.25 None intergenic_region MODIFIER n.14865A>T None
M0127839 CNFJOIOM_00011-CHR_END 14871 4 Oral 0.25 None intergenic_region MODIFIER n.14871C>T None
M0127840 CNFJOIOM_00011 10172 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -511G>T None
M0127841 CNFJOIOM_00011 10194 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -533T>A None
M0127842 CNFJOIOM_00011 10356 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -695T>G None
M0127843 CNFJOIOM_00011 10401 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -740G>T None
M0127844 CNFJOIOM_00011 10437 6 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -776A>G None
M0127845 CNFJOIOM_00011 10443 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -782T>G None
M0127846 CNFJOIOM_00011 10458 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -797T>C None
M0127847 CNFJOIOM_00011 10479 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -818C>A None
M0127848 CNFJOIOM_00011 10512 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -851G>C None
M0127849 CNFJOIOM_00011 10519 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -858T>G None
M0127850 CNFJOIOM_00011 10582 6 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -921T>C None
M0127851 CNFJOIOM_00011 10647 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -986A>G None
M0127852 CNFJOIOM_00011 11019 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -1358A>G None
M0127853 CNFJOIOM_00011 11034 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -1373T>C None
M0127854 CNFJOIOM_00011 11049 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -1388A>T None
M0127855 CNFJOIOM_00011 11145 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -1484G>A None
M0127856 CNFJOIOM_00011 11217 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -1556T>A None
M0127857 CNFJOIOM_00011 11294 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -1633C>G None
M0127858 CNFJOIOM_00011 11313 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -1652A>T None
M0127859 CNFJOIOM_00011 11922 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -2261A>G None
M0127860 CNFJOIOM_00011 12290 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -2629T>C None
M0127861 CNFJOIOM_00011 12291 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -2630G>A None
M0127862 CNFJOIOM_00011 12543 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -2882C>T None
M0127863 CNFJOIOM_00011 12550 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -2889C>T None
M0127864 CNFJOIOM_00011 12586 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -2925C>A None
M0127865 CNFJOIOM_00011 12603 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -2942C>T None
M0127866 CNFJOIOM_00011 12838 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -3177C>T None
M0127867 CNFJOIOM_00011 12936 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -3275C>T None
M0127868 CNFJOIOM_00011 14022 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -4361A>G None
M0127869 CNFJOIOM_00011 14040 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -4379T>C None
M0127870 CNFJOIOM_00011 14049 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -4388A>G None
M0127871 CNFJOIOM_00009 7551 3 Oral 0.19 protein_coding synonymous_variant LOW 651A>G Glu217Glu
M0127872 CNFJOIOM_00009 7638 3 Oral 0.19 protein_coding synonymous_variant LOW 738T>C Phe246Phe
M0127873 CNFJOIOM_00009 7641 3 Oral 0.19 protein_coding synonymous_variant LOW 741C>T Ile247Ile
M0127874 CNFJOIOM_00009 7941 3 Oral 0.19 protein_coding synonymous_variant LOW 1041G>T Ser347Ser
M0127875 CNFJOIOM_00010 8459 4 Oral 0.25 protein_coding synonymous_variant LOW 393A>G Leu131Leu
M0127876 CNFJOIOM_00010 8462 3 Oral 0.19 protein_coding synonymous_variant LOW 396T>C Cys132Cys
M0127877 CNFJOIOM_00011 8885 3 Oral 0.19 protein_coding synonymous_variant LOW 777T>C Gly259Gly
M0127878 CNFJOIOM_00011 9107 5 Oral 0.31 protein_coding synonymous_variant LOW 555T>C Phe185Phe
M0127879 CNFJOIOM_00011 9164 5 Oral 0.31 protein_coding synonymous_variant LOW 498C>T Ser166Ser
M0127880 CNFJOIOM_00011 9176 3 Oral 0.19 protein_coding synonymous_variant LOW 486A>T Ala162Ala
M0127881 CNFJOIOM_00011 9178 3 Oral 0.19 protein_coding missense_variant MODERATE 484G>A Ala162Thr
M0127882 CNFJOIOM_00011 9298 5 Oral 0.31 protein_coding missense_variant MODERATE 364A>G Ile122Val
M0127883 CNFJOIOM_00011 9428 5 Oral 0.31 protein_coding synonymous_variant LOW 234T>C Pro78Pro
M0127884 CNFJOIOM_00011 9278 3 Oral 0.19 protein_coding synonymous_variant LOW 384C>T Ala128Ala
M0127885 CNFJOIOM_00011 9302 3 Oral 0.19 protein_coding synonymous_variant LOW 360G>A Lys120Lys
M0127886 CNFJOIOM_00011 10265 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -604G>A None
M0127887 CNFJOIOM_00011 10280 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -619A>T None
M0127888 CNFJOIOM_00011 10629 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -968T>C None
M0127889 CNFJOIOM_00011 10779 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -1118T>C None
M0127890 CNFJOIOM_00011 10968 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -1307G>A None
M0127891 CNFJOIOM_00011 12732 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -3071G>A None
M0127892 CNFJOIOM_00011 12744 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -3083G>C None
M0127893 CNFJOIOM_00002 618 4 Oral 0.25 protein_coding synonymous_variant LOW 321A>C Ala107Ala
M0127894 CNFJOIOM_00002 639 3 Oral 0.19 protein_coding synonymous_variant LOW 342G>A Ala114Ala
M0127895 CNFJOIOM_00002 690 4 Oral 0.25 protein_coding synonymous_variant LOW 393T>C Ile131Ile
M0127896 CNFJOIOM_00002 702 4 Oral 0.25 protein_coding synonymous_variant LOW 405C>T Asp135Asp
M0127897 CNFJOIOM_00002 717 4 Oral 0.25 protein_coding synonymous_variant LOW 420T>A Thr140Thr
M0127898 CNFJOIOM_00002 718 4 Oral 0.25 protein_coding missense_variant MODERATE 421C>A Gln141Lys
M0127899 CNFJOIOM_00002 720 4 Oral 0.25 protein_coding synonymous_variant LOW 423A>G Gln141Gln
M0127900 CNFJOIOM_00002 798 3 Oral 0.19 protein_coding synonymous_variant LOW 501A>G Gln167Gln
M0127901 CNFJOIOM_00002 858 5 Oral 0.31 protein_coding synonymous_variant LOW 561A>T Gly187Gly
M0127902 CNFJOIOM_00002 957 6 Oral 0.38 protein_coding synonymous_variant LOW 660A>T Val220Val
M0127903 CNFJOIOM_00002 1033 4 Oral 0.25 protein_coding missense_variant MODERATE 736A>C Lys246Gln
M0127904 CNFJOIOM_00002 1044 3 Oral 0.19 protein_coding synonymous_variant LOW 747C>T Asp249Asp
M0127905 CNFJOIOM_00002 1056 4 Oral 0.25 protein_coding synonymous_variant LOW 759G>A Gln253Gln
M0127906 CNFJOIOM_00002 1068 6 Oral 0.38 protein_coding synonymous_variant LOW 771A>C Thr257Thr
M0127907 CNFJOIOM_00002 1104 4 Oral 0.25 protein_coding synonymous_variant LOW 807A>G Ala269Ala
M0127908 CNFJOIOM_00002 1110 5 Oral 0.31 protein_coding synonymous_variant LOW 813C>A Thr271Thr
M0127909 CNFJOIOM_00002 1116 4 Oral 0.25 protein_coding synonymous_variant LOW 819A>G Gln273Gln
M0127910 CNFJOIOM_00002 1338 3 Oral 0.19 protein_coding synonymous_variant LOW 1041A>G Lys347Lys
M0127911 CNFJOIOM_00002 1368 4 Oral 0.25 protein_coding synonymous_variant LOW 1071A>G Val357Val
M0127912 CNFJOIOM_00002 1404 3 Oral 0.19 protein_coding synonymous_variant LOW 1107C>T Gly369Gly
M0127913 CNFJOIOM_00002 1470 4 Oral 0.25 protein_coding synonymous_variant LOW 1173A>T Ala391Ala
M0127914 CNFJOIOM_00002 1623 5 Oral 0.31 protein_coding synonymous_variant LOW 1326A>T Thr442Thr
M0127915 CNFJOIOM_00002 1676 6 Oral 0.38 protein_coding missense_variant MODERATE 1379T>C Ile460Thr
M0127916 CNFJOIOM_00003 1896 5 Oral 0.31 protein_coding synonymous_variant LOW 135A>T Val45Val
M0127917 CNFJOIOM_00003 1993 4 Oral 0.25 protein_coding missense_variant MODERATE 232A>G Thr78Ala
M0127918 CNFJOIOM_00003 2085 6 Oral 0.38 protein_coding synonymous_variant LOW 324T>C Gly108Gly
M0127919 CNFJOIOM_00003 2181 4 Oral 0.25 protein_coding synonymous_variant LOW 420T>C Asp140Asp
M0127920 CNFJOIOM_00003 2205 5 Oral 0.31 protein_coding synonymous_variant LOW 444T>G Val148Val
M0127921 CNFJOIOM_00003 2313 3 Oral 0.19 protein_coding synonymous_variant LOW 552C>T Gly184Gly
M0127922 CNFJOIOM_00003 2337 5 Oral 0.31 protein_coding synonymous_variant LOW 576T>C Gly192Gly
M0127923 CNFJOIOM_00003 2368 3 Oral 0.19 protein_coding missense_variant MODERATE 607G>A Val203Ile
M0127924 CNFJOIOM_00003 2457 4 Oral 0.25 protein_coding synonymous_variant LOW 696T>C Ile232Ile
M0127925 CNFJOIOM_00005 3057 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -716A>G None
M0127926 CNFJOIOM_00005 3067 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -706G>A None
M0127927 CNFJOIOM_00004 3129 5 Oral 0.31 protein_coding missense_variant MODERATE 457T>C Cys153Arg
M0127928 CNFJOIOM_00004 3139 5 Oral 0.31 protein_coding synonymous_variant LOW 447G>A Val149Val
M0127929 CNFJOIOM_00004 3280 5 Oral 0.31 protein_coding synonymous_variant LOW 306C>T Thr102Thr
M0127930 CNFJOIOM_00004 3283 5 Oral 0.31 protein_coding synonymous_variant LOW 303C>T Asp101Asp
M0127931 CNFJOIOM_00004 3394 4 Oral 0.25 protein_coding synonymous_variant LOW 192T>C Phe64Phe
M0127932 CNFJOIOM_00004 3631 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -46G>A None
M0127933 CNFJOIOM_00004 3644 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -59A>G None
M0127934 CNFJOIOM_00005 3970 5 Oral 0.31 protein_coding synonymous_variant LOW 198C>T Ala66Ala
M0127935 CNFJOIOM_00005 4012 3 Oral 0.19 protein_coding synonymous_variant LOW 240G>A Ala80Ala
M0127936 CNFJOIOM_00005 4024 3 Oral 0.19 protein_coding synonymous_variant LOW 252T>C Tyr84Tyr
M0127937 CNFJOIOM_00005 4054 3 Oral 0.19 protein_coding synonymous_variant LOW 282G>A Gln94Gln
M0127938 CNFJOIOM_00005 4099 4 Oral 0.25 protein_coding synonymous_variant LOW 327T>C Asn109Asn
M0127939 CNFJOIOM_00005 4102 3 Oral 0.19 protein_coding synonymous_variant LOW 330T>C Pro110Pro
M0127940 CNFJOIOM_00005 4114 4 Oral 0.25 protein_coding synonymous_variant LOW 342G>A Ser114Ser
M0127941 CNFJOIOM_00005 4201 5 Oral 0.31 protein_coding synonymous_variant LOW 429A>C Gly143Gly
M0127942 CNFJOIOM_00005 4219 5 Oral 0.31 protein_coding synonymous_variant LOW 447A>G Lys149Lys
M0127943 CNFJOIOM_00005 4231 3 Oral 0.19 protein_coding synonymous_variant LOW 459C>T Asp153Asp
M0127944 CNFJOIOM_00005 4324 3 Oral 0.19 protein_coding synonymous_variant LOW 552A>T Thr184Thr
M0127945 CNFJOIOM_00005 4384 5 Oral 0.31 protein_coding synonymous_variant LOW 612A>G Ala204Ala
M0127946 CNFJOIOM_00005 4519 6 Oral 0.38 protein_coding synonymous_variant LOW 747T>C Ile249Ile
M0127947 CNFJOIOM_00005 4534 5 Oral 0.31 protein_coding synonymous_variant LOW 762T>A Val254Val
M0127948 CNFJOIOM_00005 4555 4 Oral 0.25 protein_coding synonymous_variant LOW 783A>T Ala261Ala
M0127949 CNFJOIOM_00004 4676 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -1091T>A None
M0127950 CNFJOIOM_00006 4930 6 Oral 0.38 protein_coding missense_variant MODERATE 140T>C Val47Ala
M0127951 CNFJOIOM_00006 4937 3 Oral 0.19 protein_coding synonymous_variant LOW 147C>T Arg49Arg
M0127952 CNFJOIOM_00004 5037 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -1452C>T None
M0127953 CNFJOIOM_00004 5097 6 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1512C>A None
M0127954 CNFJOIOM_00004 5100 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -1515G>A None
M0127955 CNFJOIOM_00004 5105 6 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1520C>T None
M0127956 CNFJOIOM_00007 5374 6 Oral 0.38 protein_coding synonymous_variant LOW 213A>G Thr71Thr
M0127957 CNFJOIOM_00007 5566 6 Oral 0.38 protein_coding synonymous_variant LOW 405T>C Leu135Leu
M0127958 CNFJOIOM_00007 5596 3 Oral 0.19 protein_coding synonymous_variant LOW 435C>T Ser145Ser
M0127959 CNFJOIOM_00008 6319 4 Oral 0.25 protein_coding synonymous_variant LOW 291A>G Glu97Glu
M0127960 CNFJOIOM_00008 6355 5 Oral 0.31 protein_coding synonymous_variant LOW 327T>C Ile109Ile
M0127961 CNFJOIOM_00008 6532 3 Oral 0.19 protein_coding synonymous_variant LOW 504T>C Thr168Thr
M0127962 CNFJOIOM_00008 6595 5 Oral 0.31 protein_coding synonymous_variant LOW 567T>C Asp189Asp
M0127963 CNFJOIOM_00008 6616 4 Oral 0.25 protein_coding synonymous_variant LOW 588C>T Ser196Ser
M0127964 CNFJOIOM_00008 6640 4 Oral 0.25 protein_coding synonymous_variant LOW 612C>T Arg204Arg
M0127965 CNFJOIOM_00008 6663 4 Oral 0.25 protein_coding missense_variant MODERATE 635T>C Phe212Ser
M0127966 CNFJOIOM_00004 6780 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -3195C>T None
M0127967 CNFJOIOM_00004 6836 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -3251T>C None
M0127968 CNFJOIOM_00004 6839 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -3254C>T None
M0127969 CNFJOIOM_00004 6867 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -3282T>A None
M0127970 CNFJOIOM_00001 92 4 Oral 0.25 protein_coding synonymous_variant LOW 18A>T Leu6Leu
M0127971 CNFJOIOM_00001 239 5 Oral 0.31 protein_coding synonymous_variant LOW 165A>G Leu55Leu
M0127972 CNFJOIOM_00001 257 5 Oral 0.31 protein_coding synonymous_variant LOW 183G>A Glu61Glu
M0127973 CNFJOIOM_00002 299 5 Oral 0.31 protein_coding start_lost HIGH 2T>C Met1?
M0127974 CNFJOIOM_00002 825 5 Oral 0.31 protein_coding synonymous_variant LOW 528T>C Tyr176Tyr
M0127975 CNFJOIOM_00002 1288 3 Oral 0.19 protein_coding missense_variant MODERATE 991T>A Ser331Thr
M0127976 CNFJOIOM_00005 2723 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -1050G>A None
M0127977 CNFJOIOM_00005 2863 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -910A>G None
M0127978 CNFJOIOM_00002 1218 4 Oral 0.25 protein_coding synonymous_variant LOW 921C>T Asp307Asp
M0127979 CNFJOIOM_00003 2229 3 Oral 0.19 protein_coding synonymous_variant LOW 468T>C Asn156Asn
M0127980 CNFJOIOM_00003 2349 3 Oral 0.19 protein_coding synonymous_variant LOW 588T>A Val196Val
M0127981 CNFJOIOM_00005 2894 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -879A>T None
M0127982 CNFJOIOM_00005 2936 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -837T>C None
M0127983 CNFJOIOM_00005 2956 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -817T>C None
M0127984 CNFJOIOM_00005 2977 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -796T>A None
M0127985 CNFJOIOM_00005 2983 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -790C>A None
M0127986 CNFJOIOM_00005 2985 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -788G>A None
M0127987 CNFJOIOM_00005 3000 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -773A>G None
M0127988 CNFJOIOM_00005 3020 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -753A>G None
M0127989 CNFJOIOM_00005 3027 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -746C>T None
M0127990 CNFJOIOM_00005 3059 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -714G>T None
M0127991 CNFJOIOM_00005 3082 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -691C>A None
M0127992 CNFJOIOM_00004 3130 4 Oral 0.25 protein_coding synonymous_variant LOW 456T>A Ala152Ala
M0127993 CNFJOIOM_00004 3141 4 Oral 0.25 protein_coding missense_variant MODERATE 445G>A Val149Met
M0127994 CNFJOIOM_00004 3164 4 Oral 0.25 protein_coding missense_variant MODERATE 422A>G Asn141Ser
M0127995 CNFJOIOM_00004 3166 4 Oral 0.25 protein_coding synonymous_variant LOW 420A>T Val140Val
M0127996 CNFJOIOM_00004 3175 4 Oral 0.25 protein_coding synonymous_variant LOW 411T>A Val137Val
M0127997 CNFJOIOM_00004 3190 4 Oral 0.25 protein_coding synonymous_variant LOW 396T>C Ile132Ile
M0127998 CNFJOIOM_00004 3191 4 Oral 0.25 protein_coding missense_variant MODERATE 395T>C Ile132Thr
M0127999 CNFJOIOM_00004 3197 4 Oral 0.25 protein_coding missense_variant MODERATE 389T>A Phe130Tyr
M0128000 CNFJOIOM_00004 3200 4 Oral 0.25 protein_coding missense_variant MODERATE 386A>C Asn129Thr
M0128001 CNFJOIOM_00004 3217 3 Oral 0.19 protein_coding synonymous_variant LOW 369G>A Lys123Lys
M0128002 CNFJOIOM_00004 3229 4 Oral 0.25 protein_coding synonymous_variant LOW 357C>T Asn119Asn
M0128003 CNFJOIOM_00004 3315 4 Oral 0.25 protein_coding missense_variant MODERATE 271A>G Ile91Val
M0128004 CNFJOIOM_00004 3319 4 Oral 0.25 protein_coding synonymous_variant LOW 267T>C Phe89Phe
M0128005 CNFJOIOM_00004 3448 4 Oral 0.25 protein_coding synonymous_variant LOW 138C>T Phe46Phe
M0128006 CNFJOIOM_00004 3495 4 Oral 0.25 protein_coding missense_variant MODERATE 91A>G Thr31Ala
M0128007 CNFJOIOM_00005 4459 3 Oral 0.19 protein_coding synonymous_variant LOW 687C>T Asn229Asn
M0128008 CNFJOIOM_00005 4531 4 Oral 0.25 protein_coding synonymous_variant LOW 759C>T Asp253Asp
M0128009 CNFJOIOM_00005 4627 4 Oral 0.25 protein_coding synonymous_variant LOW 855A>G Ser285Ser
M0128010 CNFJOIOM_00004 4724 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -1139G>A None
M0128011 CNFJOIOM_00004 4736 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -1151G>A None
M0128012 CNFJOIOM_00004 4739 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -1154A>G None
M0128013 CNFJOIOM_00006 4889 4 Oral 0.25 protein_coding synonymous_variant LOW 99T>A Ser33Ser
M0128014 CNFJOIOM_00006 4897 4 Oral 0.25 protein_coding missense_variant MODERATE 107C>G Thr36Ser
M0128015 CNFJOIOM_00006 4898 4 Oral 0.25 protein_coding synonymous_variant LOW 108C>T Thr36Thr
M0128016 CNFJOIOM_00006 5009 4 Oral 0.25 protein_coding synonymous_variant LOW 219C>T Asn73Asn
M0128017 CNFJOIOM_00006 5010 4 Oral 0.25 protein_coding missense_variant MODERATE 220G>A Gly74Ser
M0128018 CNFJOIOM_00004 5141 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -1556T>A None
M0128019 CNFJOIOM_00007 5314 3 Oral 0.19 protein_coding synonymous_variant LOW 153T>C Phe51Phe
M0128020 CNFJOIOM_00007 5347 3 Oral 0.19 protein_coding synonymous_variant LOW 186C>T Phe62Phe
M0128021 CNFJOIOM_00007 5387 3 Oral 0.19 protein_coding missense_variant MODERATE 226A>C Asn76His
M0128022 CNFJOIOM_00007 5464 4 Oral 0.25 protein_coding synonymous_variant LOW 303C>T Ala101Ala
M0128023 CNFJOIOM_00008 6112 3 Oral 0.19 protein_coding synonymous_variant LOW 84C>T Tyr28Tyr
M0128024 CNFJOIOM_00008 6280 3 Oral 0.19 protein_coding synonymous_variant LOW 252T>A Ala84Ala
M0128025 CNFJOIOM_00008 6379 3 Oral 0.19 protein_coding synonymous_variant LOW 351T>A Ile117Ile
M0128026 CNFJOIOM_00008 6550 3 Oral 0.19 protein_coding synonymous_variant LOW 522G>A Arg174Arg
M0128027 CNFJOIOM_00004 6785 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -3200T>C None
M0128028 CNFJOIOM_00009 7908 4 Oral 0.25 protein_coding synonymous_variant LOW 1008T>C Asn336Asn
M0128029 CNFJOIOM_00011 8975 3 Oral 0.19 protein_coding synonymous_variant LOW 687T>C Ser229Ser
M0128030 CNFJOIOM_00011 10339 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -678C>T None
M0128031 CNFJOIOM_00011 10341 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -680G>A None
M0128032 CNFJOIOM_00011 10449 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -788C>T None
M0128033 CNFJOIOM_00011 10866 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -1205T>C None
M0128034 CNFJOIOM_00011 11244 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -1583T>C None
M0128035 CNFJOIOM_00011 11286 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -1625G>A None
M0128036 CNFJOIOM_00005 3030 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -743G>T None
M0128037 CNFJOIOM_00005 4636 3 Oral 0.19 protein_coding synonymous_variant LOW 864A>G Glu288Glu
M0128038 CNFJOIOM_00008 6583 3 Oral 0.19 protein_coding synonymous_variant LOW 555A>G Ser185Ser
M0128039 CNFJOIOM_00010 8207 3 Oral 0.19 protein_coding synonymous_variant LOW 141T>G Gly47Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term