Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2471
  Reference Plasmid   1111525849768046_bin.37__k141_76745
  Reference Plasmid Size   9123
  Reference Plasmid GC Content   0.39
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0128537 EDGMEBPB_00001 723 5 Oral 0.31 protein_coding synonymous_variant LOW 405G>A Leu135Leu
M0128538 EDGMEBPB_00001 756 7 Oral 0.44 protein_coding synonymous_variant LOW 438C>T Phe146Phe
M0128539 EDGMEBPB_00001 759 8 Oral 0.50 protein_coding synonymous_variant LOW 441T>C Thr147Thr
M0128540 EDGMEBPB_00001 768 8 Oral 0.50 protein_coding missense_variant MODERATE 450T>G Ile150Met
M0128541 EDGMEBPB_00001 783 8 Oral 0.50 protein_coding synonymous_variant LOW 465T>C Ile155Ile
M0128542 EDGMEBPB_00001 787 8 Oral 0.50 protein_coding missense_variant MODERATE 469G>A Ala157Thr
M0128543 EDGMEBPB_00001 789 8 Oral 0.50 protein_coding synonymous_variant LOW 471C>T Ala157Ala
M0128544 EDGMEBPB_00001 790 8 Oral 0.50 protein_coding missense_variant MODERATE 472T>C Phe158Leu
M0128545 EDGMEBPB_00001 792 8 Oral 0.50 protein_coding synonymous_variant LOW 474C>T Phe158Phe
M0128546 EDGMEBPB_00001 800 8 Oral 0.50 protein_coding missense_variant MODERATE 482G>C Gly161Ala
M0128547 EDGMEBPB_00001 816 8 Oral 0.50 protein_coding synonymous_variant LOW 498T>C Phe166Phe
M0128548 EDGMEBPB_00002 893 7 Oral 0.44 protein_coding upstream_gene_variant MODIFIER -19A>C None
M0128549 EDGMEBPB_00002 917 6 Oral 0.38 protein_coding synonymous_variant LOW 6C>T Asn2Asn
M0128550 EDGMEBPB_00002 997 9 Oral 0.56 protein_coding missense_variant MODERATE 86G>A Ser29Asn
M0128551 EDGMEBPB_00002 1061 10 Oral 0.63 protein_coding synonymous_variant LOW 150G>T Val50Val
M0128552 EDGMEBPB_00002 1172 10 Oral 0.63 protein_coding synonymous_variant LOW 261A>G Val87Val
M0128553 EDGMEBPB_00002 1175 10 Oral 0.63 protein_coding synonymous_variant LOW 264A>G Val88Val
M0128554 EDGMEBPB_00002 1187 10 Oral 0.63 protein_coding synonymous_variant LOW 276T>C Asp92Asp
M0128555 EDGMEBPB_00002 1223 6 Oral 0.38 protein_coding synonymous_variant LOW 312A>G Glu104Glu
M0128556 EDGMEBPB_00002 1283 5 Oral 0.31 protein_coding synonymous_variant LOW 372T>C Arg124Arg
M0128557 EDGMEBPB_00002 1328 5 Oral 0.31 protein_coding synonymous_variant LOW 417C>A Ala139Ala
M0128558 EDGMEBPB_00002 1361 5 Oral 0.31 protein_coding synonymous_variant LOW 450T>A Leu150Leu
M0128559 EDGMEBPB_00002 1395 3 Oral 0.19 protein_coding synonymous_variant LOW 484T>C Leu162Leu
M0128560 EDGMEBPB_00002 1562 4 Oral 0.25 protein_coding synonymous_variant LOW 651A>G Leu217Leu
M0128561 EDGMEBPB_00002 1340 7 Oral 0.44 protein_coding synonymous_variant LOW 429A>G Lys143Lys
M0128562 EDGMEBPB_00002 1358 6 Oral 0.38 protein_coding synonymous_variant LOW 447T>C Asn149Asn
M0128563 EDGMEBPB_00002 1412 3 Oral 0.19 protein_coding synonymous_variant LOW 501C>T Asn167Asn
M0128564 EDGMEBPB_00002 1448 4 Oral 0.25 protein_coding synonymous_variant LOW 537C>T Pro179Pro
M0128565 EDGMEBPB_00002 1659 8 Oral 0.50 protein_coding missense_variant MODERATE 748T>G Ser250Ala
M0128566 EDGMEBPB_00002 1700 3 Oral 0.19 protein_coding synonymous_variant LOW 789G>A Ser263Ser
M0128567 EDGMEBPB_00002 1727 7 Oral 0.44 protein_coding synonymous_variant LOW 816C>T Thr272Thr
M0128568 EDGMEBPB_00002 1733 3 Oral 0.19 protein_coding synonymous_variant LOW 822G>T Ser274Ser
M0128569 EDGMEBPB_00002 1778 4 Oral 0.25 protein_coding synonymous_variant LOW 867G>A Gln289Gln
M0128570 EDGMEBPB_00003 1966 8 Oral 0.50 protein_coding synonymous_variant LOW 69G>A Pro23Pro
M0128571 EDGMEBPB_00003 1981 3 Oral 0.19 protein_coding synonymous_variant LOW 84A>G Val28Val
M0128572 EDGMEBPB_00003 2041 8 Oral 0.50 protein_coding synonymous_variant LOW 144A>G Ser48Ser
M0128573 EDGMEBPB_00003 2155 10 Oral 0.63 protein_coding synonymous_variant LOW 258T>A Val86Val
M0128574 EDGMEBPB_00003 2285 10 Oral 0.63 protein_coding missense_variant MODERATE 388A>G Thr130Ala
M0128575 EDGMEBPB_00004 2378 10 Oral 0.63 protein_coding synonymous_variant LOW 54C>T Ile18Ile
M0128576 EDGMEBPB_00004 2429 6 Oral 0.38 protein_coding synonymous_variant LOW 105T>C Pro35Pro
M0128577 EDGMEBPB_00004 2534 9 Oral 0.56 protein_coding synonymous_variant LOW 210A>G Glu70Glu
M0128578 EDGMEBPB_00004 2561 6 Oral 0.38 protein_coding synonymous_variant LOW 237T>C Asp79Asp
M0128579 EDGMEBPB_00004 2591 9 Oral 0.56 protein_coding synonymous_variant LOW 267C>T Tyr89Tyr
M0128580 EDGMEBPB_00004 2620 10 Oral 0.63 protein_coding missense_variant MODERATE 296A>C Asn99Thr
M0128581 EDGMEBPB_00004 2624 10 Oral 0.63 protein_coding missense_variant MODERATE 300T>G Asn100Lys
M0128582 EDGMEBPB_00004 2678 3 Oral 0.19 protein_coding synonymous_variant LOW 354G>A Val118Val
M0128583 EDGMEBPB_00001 378 5 Oral 0.31 protein_coding synonymous_variant LOW 60T>C Ile20Ile
M0128584 EDGMEBPB_00002 1073 3 Oral 0.19 protein_coding synonymous_variant LOW 162G>A Leu54Leu
M0128585 EDGMEBPB_00002 1085 3 Oral 0.19 protein_coding synonymous_variant LOW 174G>A Ser58Ser
M0128586 EDGMEBPB_00002 1157 3 Oral 0.19 protein_coding synonymous_variant LOW 246A>G Glu82Glu
M0128587 EDGMEBPB_00002 1178 4 Oral 0.25 protein_coding synonymous_variant LOW 267C>T Ile89Ile
M0128588 EDGMEBPB_00002 1828 4 Oral 0.25 protein_coding missense_variant MODERATE 917C>A Thr306Asn
M0128589 EDGMEBPB_00003 1999 7 Oral 0.44 protein_coding synonymous_variant LOW 102T>A Leu34Leu
M0128590 EDGMEBPB_00003 2007 7 Oral 0.44 protein_coding missense_variant MODERATE 110G>A Ser37Asn
M0128591 EDGMEBPB_00003 2008 7 Oral 0.44 protein_coding synonymous_variant LOW 111T>C Ser37Ser
M0128592 EDGMEBPB_00003 2011 7 Oral 0.44 protein_coding synonymous_variant LOW 114A>C Val38Val
M0128593 EDGMEBPB_00003 2022 7 Oral 0.44 protein_coding missense_variant MODERATE 125T>C Val42Ala
M0128594 EDGMEBPB_00004 2417 5 Oral 0.31 protein_coding synonymous_variant LOW 93C>T Pro31Pro
M0128595 EDGMEBPB_00004 2513 3 Oral 0.19 protein_coding synonymous_variant LOW 189A>C Leu63Leu
M0128596 EDGMEBPB_00004 2612 4 Oral 0.25 protein_coding synonymous_variant LOW 288C>T Gly96Gly
M0128597 EDGMEBPB_00004 2774 9 Oral 0.56 protein_coding synonymous_variant LOW 450T>C Asp150Asp
M0128598 EDGMEBPB_00004 2794 3 Oral 0.19 protein_coding missense_variant MODERATE 470C>T Ala157Val
M0128599 EDGMEBPB_00004 2802 8 Oral 0.50 protein_coding missense_variant MODERATE 478A>G Ser160Gly
M0128600 EDGMEBPB_00004 2835 5 Oral 0.31 protein_coding missense_variant MODERATE 511T>A Phe171Ile
M0128601 EDGMEBPB_00004 2861 5 Oral 0.31 protein_coding synonymous_variant LOW 537G>A Ala179Ala
M0128602 EDGMEBPB_00004 2927 5 Oral 0.31 protein_coding synonymous_variant LOW 603A>G Val201Val
M0128603 EDGMEBPB_00004 2930 5 Oral 0.31 protein_coding synonymous_variant LOW 606T>C Gly202Gly
M0128604 EDGMEBPB_00004 2931 5 Oral 0.31 protein_coding missense_variant MODERATE 607C>G Pro203Ala
M0128605 EDGMEBPB_00004 2932 5 Oral 0.31 protein_coding missense_variant MODERATE 608C>A Pro203His
M0128606 EDGMEBPB_00004 2933 5 Oral 0.31 protein_coding synonymous_variant LOW 609T>A Pro203Pro
M0128607 EDGMEBPB_00004 2942 7 Oral 0.44 protein_coding synonymous_variant LOW 618A>G Glu206Glu
M0128608 EDGMEBPB_00005 3052 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -82G>A None
M0128609 EDGMEBPB_00005 3054 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -80T>A None
M0128610 EDGMEBPB_00005 3055 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -79T>G None
M0128611 EDGMEBPB_00005 3077 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -57C>T None
M0128612 EDGMEBPB_00005 3078 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -56A>C None
M0128613 EDGMEBPB_00005 3232 8 Oral 0.50 protein_coding synonymous_variant LOW 99C>T Asn33Asn
M0128614 EDGMEBPB_00005 3271 4 Oral 0.25 protein_coding synonymous_variant LOW 138A>G Thr46Thr
M0128615 EDGMEBPB_00005 3571 4 Oral 0.25 protein_coding missense_variant MODERATE 438T>G His146Gln
M0128616 EDGMEBPB_00005 3607 4 Oral 0.25 protein_coding synonymous_variant LOW 474T>C Asn158Asn
M0128617 EDGMEBPB_00005 3676 3 Oral 0.19 protein_coding synonymous_variant LOW 543C>T Asp181Asp
M0128618 EDGMEBPB_00005 3757 3 Oral 0.19 protein_coding synonymous_variant LOW 624A>C Ile208Ile
M0128619 EDGMEBPB_00005 3787 7 Oral 0.44 protein_coding synonymous_variant LOW 654T>C Gly218Gly
M0128620 EDGMEBPB_00005 3790 8 Oral 0.50 protein_coding synonymous_variant LOW 657G>A Val219Val
M0128621 EDGMEBPB_00005 3805 8 Oral 0.50 protein_coding synonymous_variant LOW 672T>C Asp224Asp
M0128622 EDGMEBPB_00005 3808 3 Oral 0.19 protein_coding synonymous_variant LOW 675T>C Asp225Asp
M0128623 EDGMEBPB_00005 3838 8 Oral 0.50 protein_coding synonymous_variant LOW 705C>T Thr235Thr
M0128624 EDGMEBPB_00005 3841 3 Oral 0.19 protein_coding synonymous_variant LOW 708C>A Ile236Ile
M0128625 EDGMEBPB_00005 3874 9 Oral 0.56 protein_coding synonymous_variant LOW 741C>T Ser247Ser
M0128626 EDGMEBPB_00005 3889 8 Oral 0.50 protein_coding synonymous_variant LOW 756T>C Asn252Asn
M0128627 EDGMEBPB_00005 3931 8 Oral 0.50 protein_coding synonymous_variant LOW 798T>C Asp266Asp
M0128628 EDGMEBPB_00005 3997 3 Oral 0.19 protein_coding synonymous_variant LOW 864T>C Ala288Ala
M0128629 EDGMEBPB_00005 4036 8 Oral 0.50 protein_coding synonymous_variant LOW 903G>T Gly301Gly
M0128630 EDGMEBPB_00005 4063 5 Oral 0.31 protein_coding synonymous_variant LOW 930A>G Glu310Glu
M0128631 EDGMEBPB_00005 4121 8 Oral 0.50 protein_coding missense_variant MODERATE 988A>G Ile330Val
M0128632 EDGMEBPB_00005 4136 4 Oral 0.25 protein_coding missense_variant MODERATE 1003A>T Thr335Ser
M0128633 EDGMEBPB_00006 4303 5 Oral 0.31 protein_coding synonymous_variant LOW 138A>C Ile46Ile
M0128634 EDGMEBPB_00006 4357 10 Oral 0.63 protein_coding synonymous_variant LOW 192A>G Glu64Glu
M0128635 EDGMEBPB_00006 4381 6 Oral 0.38 protein_coding synonymous_variant LOW 216C>T Asn72Asn
M0128636 EDGMEBPB_00006 4444 8 Oral 0.50 protein_coding synonymous_variant LOW 279A>G Gly93Gly
M0128637 EDGMEBPB_00006 4616 9 Oral 0.56 protein_coding missense_variant MODERATE 451A>T Ile151Leu
M0128638 EDGMEBPB_00006 4617 9 Oral 0.56 protein_coding missense_variant MODERATE 452T>C Ile151Thr
M0128639 EDGMEBPB_00006 4622 9 Oral 0.56 protein_coding missense_variant MODERATE 457G>T Asp153Tyr
M0128640 EDGMEBPB_00006 4624 9 Oral 0.56 protein_coding synonymous_variant LOW 459T>C Asp153Asp
M0128641 EDGMEBPB_00006 4633 9 Oral 0.56 protein_coding synonymous_variant LOW 468G>A Arg156Arg
M0128642 EDGMEBPB_00006 4638 9 Oral 0.56 protein_coding missense_variant MODERATE 473A>G Lys158Arg
M0128643 EDGMEBPB_00006 4640 9 Oral 0.56 protein_coding missense_variant MODERATE 475A>G Ile159Val
M0128644 EDGMEBPB_00006 4642 7 Oral 0.44 protein_coding synonymous_variant LOW 477C>T Ile159Ile
M0128645 EDGMEBPB_00006 4657 9 Oral 0.56 protein_coding synonymous_variant LOW 492A>G Glu164Glu
M0128646 EDGMEBPB_00006 4702 10 Oral 0.63 protein_coding synonymous_variant LOW 537G>A Lys179Lys
M0128647 EDGMEBPB_00006 4708 10 Oral 0.63 protein_coding synonymous_variant LOW 543T>A Ile181Ile
M0128648 EDGMEBPB_00006 4753 10 Oral 0.63 protein_coding synonymous_variant LOW 588T>C Asn196Asn
M0128649 EDGMEBPB_00006 4768 4 Oral 0.25 protein_coding synonymous_variant LOW 603G>A Leu201Leu
M0128650 EDGMEBPB_00006 4774 3 Oral 0.19 protein_coding synonymous_variant LOW 609C>T Asn203Asn
M0128651 EDGMEBPB_00006 4780 3 Oral 0.19 protein_coding synonymous_variant LOW 615C>T His205His
M0128652 EDGMEBPB_00006 4798 7 Oral 0.44 protein_coding synonymous_variant LOW 633A>G Arg211Arg
M0128653 EDGMEBPB_00007 4900 3 Oral 0.19 protein_coding missense_variant MODERATE 31G>A Ala11Thr
M0128654 EDGMEBPB_00007 5043 10 Oral 0.63 protein_coding synonymous_variant LOW 174A>G Glu58Glu
M0128655 EDGMEBPB_00007 5049 10 Oral 0.63 protein_coding missense_variant MODERATE 180T>G Asp60Glu
M0128656 EDGMEBPB_00007 5061 9 Oral 0.56 protein_coding synonymous_variant LOW 192T>C Asp64Asp
M0128657 EDGMEBPB_00007 5106 10 Oral 0.63 protein_coding synonymous_variant LOW 237T>C Tyr79Tyr
M0128658 EDGMEBPB_00007 5130 3 Oral 0.19 protein_coding synonymous_variant LOW 261T>G Thr87Thr
M0128659 EDGMEBPB_00007 5139 4 Oral 0.25 protein_coding synonymous_variant LOW 270G>A Ser90Ser
M0128660 EDGMEBPB_00007 5220 7 Oral 0.44 protein_coding synonymous_variant LOW 351T>C Asn117Asn
M0128661 EDGMEBPB_00007 5271 7 Oral 0.44 protein_coding synonymous_variant LOW 402A>G Glu134Glu
M0128662 EDGMEBPB_00007 5283 3 Oral 0.19 protein_coding synonymous_variant LOW 414G>A Glu138Glu
M0128663 EDGMEBPB_00007 5448 4 Oral 0.25 protein_coding synonymous_variant LOW 579C>A Ala193Ala
M0128664 EDGMEBPB_00007 5451 4 Oral 0.25 protein_coding synonymous_variant LOW 582T>C Phe194Phe
M0128665 EDGMEBPB_00007 5490 9 Oral 0.56 protein_coding synonymous_variant LOW 621A>G Leu207Leu
M0128666 EDGMEBPB_00007 5544 5 Oral 0.31 protein_coding synonymous_variant LOW 675A>G Glu225Glu
M0128667 EDGMEBPB_00007 5560 3 Oral 0.19 protein_coding synonymous_variant LOW 691C>T Leu231Leu
M0128668 EDGMEBPB_00007 5610 5 Oral 0.31 protein_coding synonymous_variant LOW 741A>G Glu247Glu
M0128669 EDGMEBPB_00007 5662 3 Oral 0.19 protein_coding missense_variant MODERATE 793C>T Pro265Ser
M0128670 EDGMEBPB_00007 5692 10 Oral 0.63 protein_coding synonymous_variant LOW 823C>T Leu275Leu
M0128671 EDGMEBPB_00007 5697 9 Oral 0.56 protein_coding synonymous_variant LOW 828A>C Ile276Ile
M0128672 EDGMEBPB_00007 5733 7 Oral 0.44 protein_coding synonymous_variant LOW 864T>C His288His
M0128673 EDGMEBPB_00007 5736 10 Oral 0.63 protein_coding synonymous_variant LOW 867T>C Asp289Asp
M0128674 EDGMEBPB_00007 5877 10 Oral 0.63 protein_coding missense_variant MODERATE 1008A>G Ile336Met
M0128675 EDGMEBPB_00007 6021 9 Oral 0.56 protein_coding synonymous_variant LOW 1152C>T Ala384Ala
M0128676 EDGMEBPB_00007 6192 3 Oral 0.19 protein_coding synonymous_variant LOW 1323A>G Gln441Gln
M0128677 EDGMEBPB_00007 6223 9 Oral 0.56 protein_coding missense_variant MODERATE 1354G>A Val452Ile
M0128678 EDGMEBPB_00007 6237 4 Oral 0.25 protein_coding synonymous_variant LOW 1368C>T Val456Val
M0128679 EDGMEBPB_00007 6297 7 Oral 0.44 protein_coding synonymous_variant LOW 1428T>A Gly476Gly
M0128680 EDGMEBPB_00007 6366 10 Oral 0.63 protein_coding synonymous_variant LOW 1497T>C Gly499Gly
M0128681 EDGMEBPB_00007 6474 6 Oral 0.38 protein_coding synonymous_variant LOW 1605C>T Phe535Phe
M0128682 EDGMEBPB_00007 6588 9 Oral 0.56 protein_coding synonymous_variant LOW 1719C>T Ala573Ala
M0128683 EDGMEBPB_00007 6720 9 Oral 0.56 protein_coding synonymous_variant LOW 1851C>T Gly617Gly
M0128684 EDGMEBPB_00007 6777 11 Oral 0.69 protein_coding synonymous_variant LOW 1908T>C Ala636Ala
M0128685 EDGMEBPB_00008 7212 10 Oral 0.63 protein_coding synonymous_variant LOW 252T>C Ser84Ser
M0128686 EDGMEBPB_00009 7707 9 Oral 0.56 protein_coding synonymous_variant LOW 261T>C Asp87Asp
M0128687 EDGMEBPB_00009 7718 11 Oral 0.69 protein_coding missense_variant MODERATE 272C>G Ala91Gly
M0128688 EDGMEBPB_00009 7731 11 Oral 0.69 protein_coding synonymous_variant LOW 285T>C Gly95Gly
M0128689 EDGMEBPB_00009 7926 10 Oral 0.63 protein_coding synonymous_variant LOW 480A>G Lys160Lys
M0128690 EDGMEBPB_00009 8004 8 Oral 0.50 protein_coding synonymous_variant LOW 558A>G Val186Val
M0128691 EDGMEBPB_00009 8088 4 Oral 0.25 protein_coding synonymous_variant LOW 642C>T Ile214Ile
M0128692 EDGMEBPB_00009 8181 10 Oral 0.63 protein_coding synonymous_variant LOW 735T>A Ile245Ile
M0128693 EDGMEBPB_00009 8472 8 Oral 0.50 protein_coding synonymous_variant LOW 1026G>T Pro342Pro
M0128694 EDGMEBPB_00009 8484 10 Oral 0.63 protein_coding synonymous_variant LOW 1038A>G Ser346Ser
M0128695 EDGMEBPB_00009 8514 8 Oral 0.50 protein_coding synonymous_variant LOW 1068G>A Glu356Glu
M0128696 EDGMEBPB_00009 8550 4 Oral 0.25 protein_coding synonymous_variant LOW 1104A>G Gln368Gln
M0128697 EDGMEBPB_00009 8613 4 Oral 0.25 protein_coding synonymous_variant LOW 1167T>C Ile389Ile
M0128698 EDGMEBPB_00009 8617 5 Oral 0.31 protein_coding synonymous_variant LOW 1171A>C Arg391Arg
M0128699 EDGMEBPB_00009 8676 5 Oral 0.31 protein_coding synonymous_variant LOW 1230C>T Thr410Thr
M0128700 EDGMEBPB_00009 8775 5 Oral 0.31 protein_coding synonymous_variant LOW 1329G>A Leu443Leu
M0128701 EDGMEBPB_00009 8784 9 Oral 0.56 protein_coding synonymous_variant LOW 1338C>T Val446Val
M0128702 EDGMEBPB_00009 8806 5 Oral 0.31 protein_coding missense_variant MODERATE 1360G>A Ala454Thr
M0128703 EDGMEBPB_00009 8841 3 Oral 0.19 protein_coding synonymous_variant LOW 1395T>C Phe465Phe
M0128704 EDGMEBPB_00009 8847 6 Oral 0.38 protein_coding synonymous_variant LOW 1401T>C Asp467Asp
M0128705 EDGMEBPB_00009 9000 6 Oral 0.38 protein_coding synonymous_variant LOW 1554C>T Ile518Ile
M0128706 EDGMEBPB_00009 9042 4 Oral 0.25 protein_coding synonymous_variant LOW 1596G>A Val532Val
M0128707 EDGMEBPB_00009 9048 9 Oral 0.56 protein_coding synonymous_variant LOW 1602G>A Lys534Lys
M0128708 EDGMEBPB_00001 627 4 Oral 0.25 protein_coding synonymous_variant LOW 309C>A Ala103Ala
M0128709 EDGMEBPB_00001 648 4 Oral 0.25 protein_coding synonymous_variant LOW 330G>A Gln110Gln
M0128710 EDGMEBPB_00001 678 4 Oral 0.25 protein_coding synonymous_variant LOW 360G>A Lys120Lys
M0128711 EDGMEBPB_00001 687 4 Oral 0.25 protein_coding synonymous_variant LOW 369A>T Gly123Gly
M0128712 EDGMEBPB_00004 2420 4 Oral 0.25 protein_coding synonymous_variant LOW 96G>A Lys32Lys
M0128713 EDGMEBPB_00004 2518 3 Oral 0.19 protein_coding missense_variant MODERATE 194G>A Ser65Asn
M0128714 EDGMEBPB_00004 2570 6 Oral 0.38 protein_coding synonymous_variant LOW 246T>C Phe82Phe
M0128715 EDGMEBPB_00004 2804 3 Oral 0.19 protein_coding missense_variant MODERATE 480T>A Ser160Arg
M0128716 EDGMEBPB_00004 2877 8 Oral 0.50 protein_coding synonymous_variant LOW 553T>C Leu185Leu
M0128717 EDGMEBPB_00006 4295 3 Oral 0.19 protein_coding missense_variant MODERATE 130A>C Thr44Pro
M0128718 EDGMEBPB_00006 4690 3 Oral 0.19 protein_coding missense_variant MODERATE 525A>G Ile175Met
M0128719 EDGMEBPB_00006 4723 4 Oral 0.25 protein_coding synonymous_variant LOW 558G>A Glu186Glu
M0128720 EDGMEBPB_00007 5037 4 Oral 0.25 protein_coding synonymous_variant LOW 168T>C Asn56Asn
M0128721 EDGMEBPB_00007 5208 3 Oral 0.19 protein_coding synonymous_variant LOW 339C>A Thr113Thr
M0128722 EDGMEBPB_00007 5230 3 Oral 0.19 protein_coding synonymous_variant LOW 361C>T Leu121Leu
M0128723 EDGMEBPB_00007 5241 3 Oral 0.19 protein_coding synonymous_variant LOW 372G>A Lys124Lys
M0128724 EDGMEBPB_00007 5658 5 Oral 0.31 protein_coding synonymous_variant LOW 789C>T Asp263Asp
M0128725 EDGMEBPB_00007 5823 3 Oral 0.19 protein_coding synonymous_variant LOW 954C>T Tyr318Tyr
M0128726 EDGMEBPB_00007 5841 7 Oral 0.44 protein_coding synonymous_variant LOW 972A>G Lys324Lys
M0128727 EDGMEBPB_00007 6048 4 Oral 0.25 protein_coding synonymous_variant LOW 1179G>A Lys393Lys
M0128728 EDGMEBPB_00007 6051 4 Oral 0.25 protein_coding synonymous_variant LOW 1182G>A Glu394Glu
M0128729 EDGMEBPB_00007 6108 3 Oral 0.19 protein_coding synonymous_variant LOW 1239C>A Ala413Ala
M0128730 EDGMEBPB_00007 6206 6 Oral 0.38 protein_coding missense_variant MODERATE 1337C>A Thr446Asn
M0128731 EDGMEBPB_00007 6387 9 Oral 0.56 protein_coding synonymous_variant LOW 1518A>G Val506Val
M0128732 EDGMEBPB_00007 6636 5 Oral 0.31 protein_coding synonymous_variant LOW 1767G>A Glu589Glu
M0128733 EDGMEBPB_00007 6639 5 Oral 0.31 protein_coding synonymous_variant LOW 1770A>G Lys590Lys
M0128734 EDGMEBPB_00007 6870 10 Oral 0.63 protein_coding synonymous_variant LOW 2001A>G Pro667Pro
M0128735 EDGMEBPB_00007 6903 5 Oral 0.31 protein_coding synonymous_variant LOW 2034G>A Glu678Glu
M0128736 EDGMEBPB_00007 6906 4 Oral 0.25 protein_coding synonymous_variant LOW 2037C>T Pro679Pro
M0128737 EDGMEBPB_00008 6960 9 Oral 0.56 protein_coding upstream_gene_variant MODIFIER -1G>A None
M0128738 EDGMEBPB_00008 7116 4 Oral 0.25 protein_coding synonymous_variant LOW 156C>T Pro52Pro
M0128739 EDGMEBPB_00008 7137 6 Oral 0.38 protein_coding synonymous_variant LOW 177C>T Cys59Cys
M0128740 EDGMEBPB_00008 7179 10 Oral 0.63 protein_coding synonymous_variant LOW 219A>C Ala73Ala
M0128741 EDGMEBPB_00008 7299 5 Oral 0.31 protein_coding synonymous_variant LOW 339G>A Lys113Lys
M0128742 EDGMEBPB_00009 7545 4 Oral 0.25 protein_coding synonymous_variant LOW 99T>A Ser33Ser
M0128743 EDGMEBPB_00009 7905 3 Oral 0.19 protein_coding synonymous_variant LOW 459C>T Gly153Gly
M0128744 EDGMEBPB_00009 7983 6 Oral 0.38 protein_coding synonymous_variant LOW 537C>T Gly179Gly
M0128745 EDGMEBPB_00009 8370 3 Oral 0.19 protein_coding synonymous_variant LOW 924A>T Thr308Thr
M0128746 EDGMEBPB_00009 8490 3 Oral 0.19 protein_coding synonymous_variant LOW 1044G>A Gln348Gln
M0128747 EDGMEBPB_00009 8700 4 Oral 0.25 protein_coding synonymous_variant LOW 1254G>A Gln418Gln
M0128748 EDGMEBPB_00009 8703 3 Oral 0.19 protein_coding synonymous_variant LOW 1257T>A Ala419Ala
M0128749 EDGMEBPB_00009 8742 3 Oral 0.19 protein_coding synonymous_variant LOW 1296T>C Tyr432Tyr
M0128750 EDGMEBPB_00009 8796 5 Oral 0.31 protein_coding synonymous_variant LOW 1350A>C Thr450Thr
M0128751 EDGMEBPB_00009 8802 6 Oral 0.38 protein_coding synonymous_variant LOW 1356T>C Tyr452Tyr
M0128752 EDGMEBPB_00009 8807 5 Oral 0.31 protein_coding missense_variant MODERATE 1361C>T Ala454Val
M0128753 EDGMEBPB_00009 8808 5 Oral 0.31 protein_coding synonymous_variant LOW 1362T>G Ala454Ala
M0128754 EDGMEBPB_00009 8976 3 Oral 0.19 protein_coding synonymous_variant LOW 1530C>A Gly510Gly
M0128755 EDGMEBPB_00005 3214 4 Oral 0.25 protein_coding synonymous_variant LOW 81T>C Ile27Ile
M0128756 EDGMEBPB_00005 3229 3 Oral 0.19 protein_coding synonymous_variant LOW 96A>G Arg32Arg
M0128757 EDGMEBPB_00005 3625 4 Oral 0.25 protein_coding synonymous_variant LOW 492C>T Asp164Asp
M0128758 EDGMEBPB_00005 3680 3 Oral 0.19 protein_coding missense_variant MODERATE 547G>A Val183Ile
M0128759 EDGMEBPB_00005 3688 3 Oral 0.19 protein_coding synonymous_variant LOW 555C>T Ser185Ser
M0128760 EDGMEBPB_00007 5805 5 Oral 0.31 protein_coding synonymous_variant LOW 936T>C Asn312Asn
M0128761 EDGMEBPB_00006 4696 5 Oral 0.31 protein_coding synonymous_variant LOW 531C>T Phe177Phe
M0128762 EDGMEBPB_00007 5361 3 Oral 0.19 protein_coding synonymous_variant LOW 492G>A Glu164Glu
M0128763 EDGMEBPB_00007 5461 4 Oral 0.25 protein_coding missense_variant MODERATE 592A>C Ile198Leu
M0128764 EDGMEBPB_00007 5664 3 Oral 0.19 protein_coding synonymous_variant LOW 795T>A Pro265Pro
M0128765 EDGMEBPB_00007 5679 3 Oral 0.19 protein_coding synonymous_variant LOW 810T>A Ala270Ala
M0128766 EDGMEBPB_00007 5845 4 Oral 0.25 protein_coding missense_variant MODERATE 976C>A Leu326Ile
M0128767 EDGMEBPB_00007 5997 4 Oral 0.25 protein_coding synonymous_variant LOW 1128G>A Val376Val
M0128768 EDGMEBPB_00007 6018 3 Oral 0.19 protein_coding synonymous_variant LOW 1149G>A Leu383Leu
M0128769 EDGMEBPB_00008 7071 4 Oral 0.25 protein_coding synonymous_variant LOW 111A>G Val37Val
M0128770 EDGMEBPB_00008 7074 4 Oral 0.25 protein_coding synonymous_variant LOW 114G>A Val38Val
M0128771 EDGMEBPB_00009 7839 4 Oral 0.25 protein_coding synonymous_variant LOW 393T>A Ala131Ala
M0128772 EDGMEBPB_00009 7929 3 Oral 0.19 protein_coding synonymous_variant LOW 483T>C Ile161Ile
M0128773 EDGMEBPB_00009 7932 3 Oral 0.19 protein_coding synonymous_variant LOW 486T>A Ser162Ser
M0128774 EDGMEBPB_00009 7947 4 Oral 0.25 protein_coding synonymous_variant LOW 501T>C Gly167Gly
M0128775 EDGMEBPB_00009 7956 3 Oral 0.19 protein_coding missense_variant MODERATE 510T>G Asp170Glu
M0128776 EDGMEBPB_00009 8838 3 Oral 0.19 protein_coding synonymous_variant LOW 1392C>T Thr464Thr
M0128777 EDGMEBPB_00006 4414 5 Oral 0.31 protein_coding synonymous_variant LOW 249T>A Pro83Pro
M0128778 EDGMEBPB_00006 4531 4 Oral 0.25 protein_coding synonymous_variant LOW 366T>C Ile122Ile
M0128779 EDGMEBPB_00006 4558 4 Oral 0.25 protein_coding synonymous_variant LOW 393T>C Asn131Asn
M0128780 EDGMEBPB_00007 5571 3 Oral 0.19 protein_coding synonymous_variant LOW 702T>C Pro234Pro
M0128781 EDGMEBPB_00009 8301 4 Oral 0.25 protein_coding synonymous_variant LOW 855C>A Leu285Leu
M0128782 EDGMEBPB_00007 5523 4 Oral 0.25 protein_coding synonymous_variant LOW 654A>G Thr218Thr
M0128783 EDGMEBPB_00007 5850 3 Oral 0.19 protein_coding synonymous_variant LOW 981A>G Lys327Lys
M0128784 EDGMEBPB_00007 5853 3 Oral 0.19 protein_coding synonymous_variant LOW 984G>A Glu328Glu
M0128785 EDGMEBPB_00007 5856 3 Oral 0.19 protein_coding synonymous_variant LOW 987A>T Val329Val
M0128786 EDGMEBPB_00007 6699 3 Oral 0.19 protein_coding synonymous_variant LOW 1830A>G Gln610Gln
M0128787 EDGMEBPB_00009 7698 3 Oral 0.19 protein_coding synonymous_variant LOW 252T>A Ala84Ala
M0128788 EDGMEBPB_00007 6741 3 Oral 0.19 protein_coding synonymous_variant LOW 1872T>C Tyr624Tyr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
EDGMEBPB_00002 EFC70712.1|GT2 97.2 8.4e-230 1 316 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term