Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2480
  Reference Plasmid   1111525849768046_bin.37__k141_99531
  Reference Plasmid Size   10439
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0129405 IPNHOKFM_00001 302 6 Oral 0.38 protein_coding synonymous_variant LOW 195T>A Ser65Ser
M0129406 IPNHOKFM_00001 401 7 Oral 0.44 protein_coding synonymous_variant LOW 294A>G Val98Val
M0129407 IPNHOKFM_00001 402 7 Oral 0.44 protein_coding missense_variant MODERATE 295G>A Asp99Asn
M0129408 IPNHOKFM_00001 671 10 Oral 0.63 protein_coding synonymous_variant LOW 564T>C Ser188Ser
M0129409 IPNHOKFM_00001 716 3 Oral 0.19 protein_coding synonymous_variant LOW 609A>G Lys203Lys
M0129410 IPNHOKFM_00001 722 4 Oral 0.25 protein_coding synonymous_variant LOW 615G>A Thr205Thr
M0129411 IPNHOKFM_00001 725 4 Oral 0.25 protein_coding synonymous_variant LOW 618G>A Glu206Glu
M0129412 IPNHOKFM_00001 731 5 Oral 0.31 protein_coding synonymous_variant LOW 624C>T Ser208Ser
M0129413 IPNHOKFM_00001 755 4 Oral 0.25 protein_coding synonymous_variant LOW 648G>A Val216Val
M0129414 IPNHOKFM_00001 776 3 Oral 0.19 protein_coding synonymous_variant LOW 669A>G Lys223Lys
M0129415 IPNHOKFM_00001 800 3 Oral 0.19 protein_coding synonymous_variant LOW 693C>T Gly231Gly
M0129416 IPNHOKFM_00001 817 3 Oral 0.19 protein_coding missense_variant MODERATE 710T>A Phe237Tyr
M0129417 IPNHOKFM_00002 1014 8 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -423C>T None
M0129418 IPNHOKFM_00002 1019 8 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -418G>T None
M0129419 IPNHOKFM_00002 1043 9 Oral 0.56 protein_coding upstream_gene_variant MODIFIER -394T>G None
M0129420 IPNHOKFM_00002 1082 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -355C>T None
M0129421 IPNHOKFM_00002 1124 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -313T>C None
M0129422 IPNHOKFM_00002 1180 7 Oral 0.44 protein_coding upstream_gene_variant MODIFIER -257A>C None
M0129423 IPNHOKFM_00002 1251 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -186G>T None
M0129424 IPNHOKFM_00002 1279 7 Oral 0.44 protein_coding upstream_gene_variant MODIFIER -158A>G None
M0129425 IPNHOKFM_00002 1316 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -121T>G None
M0129426 IPNHOKFM_00002 1347 8 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -90G>C None
M0129427 IPNHOKFM_00002 1349 7 Oral 0.44 protein_coding upstream_gene_variant MODIFIER -88A>G None
M0129428 IPNHOKFM_00002 1357 4 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -80A>G None
M0129429 IPNHOKFM_00002 1405 8 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -32C>T None
M0129430 IPNHOKFM_00002 1568 4 Oral 0.25 protein_coding synonymous_variant LOW 132C>T Pro44Pro
M0129431 IPNHOKFM_00002 1569 5 Oral 0.31 protein_coding missense_variant MODERATE 133C>A Gln45Lys
M0129432 IPNHOKFM_00002 1583 4 Oral 0.25 protein_coding synonymous_variant LOW 147T>C Asp49Asp
M0129433 IPNHOKFM_00002 1685 10 Oral 0.63 protein_coding synonymous_variant LOW 249C>A Ala83Ala
M0129434 IPNHOKFM_00002 1688 6 Oral 0.38 protein_coding synonymous_variant LOW 252C>T Leu84Leu
M0129435 IPNHOKFM_00002 1691 10 Oral 0.63 protein_coding synonymous_variant LOW 255T>C Phe85Phe
M0129436 IPNHOKFM_00002 1772 11 Oral 0.69 protein_coding synonymous_variant LOW 336C>T Ser112Ser
M0129437 IPNHOKFM_00002 1811 6 Oral 0.38 protein_coding synonymous_variant LOW 375C>T Arg125Arg
M0129438 IPNHOKFM_00002 1988 4 Oral 0.25 protein_coding synonymous_variant LOW 552C>T Tyr184Tyr
M0129439 IPNHOKFM_00002 2060 9 Oral 0.56 protein_coding synonymous_variant LOW 624T>C Asp208Asp
M0129440 IPNHOKFM_00002 2072 4 Oral 0.25 protein_coding missense_variant MODERATE 636A>C Lys212Asn
M0129441 IPNHOKFM_00002 2087 3 Oral 0.19 protein_coding synonymous_variant LOW 651C>T Asn217Asn
M0129442 IPNHOKFM_00002 2115 12 Oral 0.75 protein_coding synonymous_variant LOW 679T>C Leu227Leu
M0129443 IPNHOKFM_00002 2120 4 Oral 0.25 protein_coding synonymous_variant LOW 684T>C Phe228Phe
M0129444 IPNHOKFM_00002 2153 5 Oral 0.31 protein_coding synonymous_variant LOW 717C>T Gly239Gly
M0129445 IPNHOKFM_00002 2154 5 Oral 0.31 protein_coding missense_variant MODERATE 718A>G Met240Val
M0129446 IPNHOKFM_00002 2198 7 Oral 0.44 protein_coding synonymous_variant LOW 762G>T Leu254Leu
M0129447 IPNHOKFM_00002 2315 10 Oral 0.63 protein_coding synonymous_variant LOW 879C>T Pro293Pro
M0129448 IPNHOKFM_00002 2324 10 Oral 0.63 protein_coding synonymous_variant LOW 888T>C Gly296Gly
M0129449 IPNHOKFM_00002 2342 4 Oral 0.25 protein_coding synonymous_variant LOW 906A>G Ser302Ser
M0129450 IPNHOKFM_00002 2414 8 Oral 0.50 protein_coding synonymous_variant LOW 978A>C Thr326Thr
M0129451 IPNHOKFM_00002 2720 3 Oral 0.19 protein_coding synonymous_variant LOW 1284G>A Lys428Lys
M0129452 IPNHOKFM_00003 2731 11 Oral 0.69 protein_coding upstream_gene_variant MODIFIER -186T>G None
M0129453 IPNHOKFM_00003 2820 11 Oral 0.69 protein_coding upstream_gene_variant MODIFIER -97T>C None
M0129454 IPNHOKFM_00003 3015 9 Oral 0.56 protein_coding synonymous_variant LOW 99G>A Val33Val
M0129455 IPNHOKFM_00003 3063 7 Oral 0.44 protein_coding synonymous_variant LOW 147T>A Val49Val
M0129456 IPNHOKFM_00003 3117 8 Oral 0.50 protein_coding synonymous_variant LOW 201G>A Glu67Glu
M0129457 IPNHOKFM_00003 3294 3 Oral 0.19 protein_coding missense_variant MODERATE 378T>A Asp126Glu
M0129458 IPNHOKFM_00004 3662 12 Oral 0.75 protein_coding synonymous_variant LOW 273T>C Ile91Ile
M0129459 IPNHOKFM_00004 3668 7 Oral 0.44 protein_coding synonymous_variant LOW 279T>C Ile93Ile
M0129460 IPNHOKFM_00004 3713 6 Oral 0.38 protein_coding synonymous_variant LOW 324C>T Asn108Asn
M0129461 IPNHOKFM_00004 3725 3 Oral 0.19 protein_coding synonymous_variant LOW 336C>T Phe112Phe
M0129462 IPNHOKFM_00004 3869 7 Oral 0.44 protein_coding synonymous_variant LOW 480A>G Val160Val
M0129463 IPNHOKFM_00004 3905 3 Oral 0.19 protein_coding synonymous_variant LOW 516A>G Leu172Leu
M0129464 IPNHOKFM_00004 3912 8 Oral 0.50 protein_coding missense_variant MODERATE 523A>T Thr175Ser
M0129465 IPNHOKFM_00004 3947 10 Oral 0.63 protein_coding synonymous_variant LOW 558T>C Gly186Gly
M0129466 IPNHOKFM_00004 4157 7 Oral 0.44 protein_coding synonymous_variant LOW 768T>C Asp256Asp
M0129467 IPNHOKFM_00004 4280 4 Oral 0.25 protein_coding synonymous_variant LOW 891G>A Ala297Ala
M0129468 IPNHOKFM_00004 4340 3 Oral 0.19 protein_coding synonymous_variant LOW 951A>G Val317Val
M0129469 IPNHOKFM_00004 4403 5 Oral 0.31 protein_coding synonymous_variant LOW 1014G>A Ala338Ala
M0129470 IPNHOKFM_00005 5018 5 Oral 0.31 protein_coding missense_variant MODERATE 275A>C Asn92Thr
M0129471 IPNHOKFM_00005 5022 4 Oral 0.25 protein_coding synonymous_variant LOW 279T>C Asn93Asn
M0129472 IPNHOKFM_00005 5115 7 Oral 0.44 protein_coding synonymous_variant LOW 372A>T Thr124Thr
M0129473 IPNHOKFM_00005 5205 4 Oral 0.25 protein_coding synonymous_variant LOW 462C>T His154His
M0129474 IPNHOKFM_00005 5280 8 Oral 0.50 protein_coding synonymous_variant LOW 537G>A Glu179Glu
M0129475 IPNHOKFM_00005 5391 12 Oral 0.75 protein_coding synonymous_variant LOW 648A>G Gln216Gln
M0129476 IPNHOKFM_00005 5478 9 Oral 0.56 protein_coding synonymous_variant LOW 735A>G Lys245Lys
M0129477 IPNHOKFM_00005 5499 11 Oral 0.69 protein_coding synonymous_variant LOW 756T>C Arg252Arg
M0129478 IPNHOKFM_00005 5754 7 Oral 0.44 protein_coding synonymous_variant LOW 1011T>C Asn337Asn
M0129479 IPNHOKFM_00005 5853 3 Oral 0.19 protein_coding synonymous_variant LOW 1110C>T Asp370Asp
M0129480 IPNHOKFM_00005 5919 5 Oral 0.31 protein_coding synonymous_variant LOW 1176A>T Ser392Ser
M0129481 IPNHOKFM_00005 5949 9 Oral 0.56 protein_coding synonymous_variant LOW 1206T>C Ser402Ser
M0129482 IPNHOKFM_00005 5988 10 Oral 0.63 protein_coding synonymous_variant LOW 1245A>T Ala415Ala
M0129483 IPNHOKFM_00005 6021 5 Oral 0.31 protein_coding synonymous_variant LOW 1278A>T Gly426Gly
M0129484 IPNHOKFM_00005 6027 11 Oral 0.69 protein_coding synonymous_variant LOW 1284A>G Lys428Lys
M0129485 IPNHOKFM_00005 6051 11 Oral 0.69 protein_coding synonymous_variant LOW 1308G>A Val436Val
M0129486 IPNHOKFM_00005 6057 4 Oral 0.25 protein_coding synonymous_variant LOW 1314G>A Glu438Glu
M0129487 IPNHOKFM_00005 6066 11 Oral 0.69 protein_coding synonymous_variant LOW 1323T>C Ser441Ser
M0129488 IPNHOKFM_00005 6237 10 Oral 0.63 protein_coding synonymous_variant LOW 1494A>T Leu498Leu
M0129489 IPNHOKFM_00005 6336 12 Oral 0.75 protein_coding synonymous_variant LOW 1593T>C Ile531Ile
M0129490 IPNHOKFM_00005 6345 6 Oral 0.38 protein_coding synonymous_variant LOW 1602A>T Ser534Ser
M0129491 IPNHOKFM_00005 6397 12 Oral 0.75 protein_coding missense_variant MODERATE 1654T>G Ser552Ala
M0129492 IPNHOKFM_00005 6558 12 Oral 0.75 protein_coding synonymous_variant LOW 1815C>A Val605Val
M0129493 IPNHOKFM_00005 6639 4 Oral 0.25 protein_coding synonymous_variant LOW 1896A>T Ser632Ser
M0129494 IPNHOKFM_00005 6675 6 Oral 0.38 protein_coding synonymous_variant LOW 1932T>C Tyr644Tyr
M0129495 IPNHOKFM_00005 6684 3 Oral 0.19 protein_coding synonymous_variant LOW 1941C>T Thr647Thr
M0129496 IPNHOKFM_00005 6720 3 Oral 0.19 protein_coding synonymous_variant LOW 1977C>T Asp659Asp
M0129497 IPNHOKFM_00005 6873 8 Oral 0.50 protein_coding synonymous_variant LOW 2130C>T Thr710Thr
M0129498 IPNHOKFM_00005 6924 8 Oral 0.50 protein_coding synonymous_variant LOW 2181A>G Glu727Glu
M0129499 IPNHOKFM_00005 6978 11 Oral 0.69 protein_coding synonymous_variant LOW 2235A>C Ile745Ile
M0129500 IPNHOKFM_00005 6987 9 Oral 0.56 protein_coding synonymous_variant LOW 2244A>T Gly748Gly
M0129501 IPNHOKFM_00005 7095 8 Oral 0.50 protein_coding synonymous_variant LOW 2352A>G Val784Val
M0129502 IPNHOKFM_00005 7107 11 Oral 0.69 protein_coding synonymous_variant LOW 2364C>A Ala788Ala
M0129503 IPNHOKFM_00005 7167 9 Oral 0.56 protein_coding synonymous_variant LOW 2424A>T Val808Val
M0129504 IPNHOKFM_00005 7245 8 Oral 0.50 protein_coding synonymous_variant LOW 2502T>G Val834Val
M0129505 IPNHOKFM_00005 7452 11 Oral 0.69 protein_coding synonymous_variant LOW 2709A>T Thr903Thr
M0129506 IPNHOKFM_00005 7551 10 Oral 0.63 protein_coding synonymous_variant LOW 2808A>G Gln936Gln
M0129507 IPNHOKFM_00006 7650 7 Oral 0.44 protein_coding upstream_gene_variant MODIFIER -61G>A None
M0129508 IPNHOKFM_00006 7660 7 Oral 0.44 protein_coding upstream_gene_variant MODIFIER -51G>A None
M0129509 IPNHOKFM_00006 7814 7 Oral 0.44 protein_coding missense_variant MODERATE 104C>A Thr35Lys
M0129510 IPNHOKFM_00006 7824 10 Oral 0.63 protein_coding synonymous_variant LOW 114T>C Asn38Asn
M0129511 IPNHOKFM_00006 7830 7 Oral 0.44 protein_coding missense_variant MODERATE 120C>G Asp40Glu
M0129512 IPNHOKFM_00006 7833 7 Oral 0.44 protein_coding synonymous_variant LOW 123A>C Val41Val
M0129513 IPNHOKFM_00006 7998 12 Oral 0.75 protein_coding synonymous_variant LOW 288G>A Lys96Lys
M0129514 IPNHOKFM_00006 8361 6 Oral 0.38 protein_coding synonymous_variant LOW 651C>T Ala217Ala
M0129515 IPNHOKFM_00006 8553 5 Oral 0.31 protein_coding synonymous_variant LOW 843C>T Asn281Asn
M0129516 IPNHOKFM_00006 8688 8 Oral 0.50 protein_coding synonymous_variant LOW 978T>C Asp326Asp
M0129517 IPNHOKFM_00006 8703 8 Oral 0.50 protein_coding synonymous_variant LOW 993A>G Glu331Glu
M0129518 IPNHOKFM_00006 8718 8 Oral 0.50 protein_coding synonymous_variant LOW 1008A>T Ala336Ala
M0129519 IPNHOKFM_00006 8742 5 Oral 0.31 protein_coding synonymous_variant LOW 1032A>C Ala344Ala
M0129520 IPNHOKFM_00006 8754 6 Oral 0.38 protein_coding synonymous_variant LOW 1044A>C Thr348Thr
M0129521 IPNHOKFM_00006 8778 3 Oral 0.19 protein_coding synonymous_variant LOW 1068C>T Asn356Asn
M0129522 IPNHOKFM_00006 8826 3 Oral 0.19 protein_coding synonymous_variant LOW 1116G>A Gln372Gln
M0129523 IPNHOKFM_00006 8880 4 Oral 0.25 protein_coding synonymous_variant LOW 1170C>T Asn390Asn
M0129524 IPNHOKFM_00006 8952 5 Oral 0.31 protein_coding synonymous_variant LOW 1242T>C His414His
M0129525 IPNHOKFM_00006 8982 7 Oral 0.44 protein_coding synonymous_variant LOW 1272A>T Ala424Ala
M0129526 IPNHOKFM_00006 9027 10 Oral 0.63 protein_coding synonymous_variant LOW 1317G>A Gln439Gln
M0129527 IPNHOKFM_00006 9132 9 Oral 0.56 protein_coding synonymous_variant LOW 1422T>C Leu474Leu
M0129528 IPNHOKFM_00007 9204 6 Oral 0.38 protein_coding missense_variant MODERATE 11G>A Arg4His
M0129529 IPNHOKFM_00007 9244 11 Oral 0.69 protein_coding synonymous_variant LOW 51T>C Ser17Ser
M0129530 IPNHOKFM_00007 9247 7 Oral 0.44 protein_coding synonymous_variant LOW 54C>T Ser18Ser
M0129531 IPNHOKFM_00007 9252 5 Oral 0.31 protein_coding missense_variant MODERATE 59T>C Ile20Thr
M0129532 IPNHOKFM_00007 9253 7 Oral 0.44 protein_coding synonymous_variant LOW 60A>T Ile20Ile
M0129533 IPNHOKFM_00007 9446 11 Oral 0.69 protein_coding missense_variant MODERATE 253G>A Val85Ile
M0129534 IPNHOKFM_00007 9544 9 Oral 0.56 protein_coding synonymous_variant LOW 351A>T Ile117Ile
M0129535 IPNHOKFM_00007 9562 3 Oral 0.19 protein_coding synonymous_variant LOW 369C>T Phe123Phe
M0129536 IPNHOKFM_00007 9652 11 Oral 0.69 protein_coding synonymous_variant LOW 459T>A Pro153Pro
M0129537 IPNHOKFM_00007 9674 5 Oral 0.31 protein_coding missense_variant MODERATE 481A>C Ile161Leu
M0129538 IPNHOKFM_00007 9832 7 Oral 0.44 protein_coding synonymous_variant LOW 639C>T Phe213Phe
M0129539 IPNHOKFM_00007 9895 9 Oral 0.56 protein_coding missense_variant MODERATE 702A>C Leu234Phe
M0129540 IPNHOKFM_00007 9924 9 Oral 0.56 protein_coding missense_variant MODERATE 731A>G Asp244Gly
M0129541 IPNHOKFM_00007 9925 9 Oral 0.56 protein_coding missense_variant MODERATE 732T>G Asp244Glu
M0129542 IPNHOKFM_00007 9931 9 Oral 0.56 protein_coding missense_variant MODERATE 738C>A Phe246Leu
M0129543 IPNHOKFM_00007 9964 5 Oral 0.31 protein_coding synonymous_variant LOW 771C>T Tyr257Tyr
M0129544 IPNHOKFM_00005 10236 3 Oral 0.19 protein_coding downstream_gene_variant MODIFIER *2631T>C None
M0129545 IPNHOKFM_00005 10311 4 Oral 0.25 protein_coding downstream_gene_variant MODIFIER *2706C>T None
M0129546 IPNHOKFM_00001 193 4 Oral 0.25 protein_coding missense_variant MODERATE 86G>C Ser29Thr
M0129547 IPNHOKFM_00001 407 8 Oral 0.50 protein_coding synonymous_variant LOW 300T>A Thr100Thr
M0129548 IPNHOKFM_00001 434 6 Oral 0.38 protein_coding missense_variant MODERATE 327A>C Arg109Ser
M0129549 IPNHOKFM_00001 440 4 Oral 0.25 protein_coding synonymous_variant LOW 333A>C Gly111Gly
M0129550 IPNHOKFM_00001 503 8 Oral 0.50 protein_coding synonymous_variant LOW 396A>T Ala132Ala
M0129551 IPNHOKFM_00001 542 3 Oral 0.19 protein_coding synonymous_variant LOW 435G>A Thr145Thr
M0129552 IPNHOKFM_00001 945 4 Oral 0.25 protein_coding missense_variant MODERATE 838A>C Lys280Gln
M0129553 IPNHOKFM_00002 1203 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -234G>A None
M0129554 IPNHOKFM_00002 1577 3 Oral 0.19 protein_coding synonymous_variant LOW 141C>T Thr47Thr
M0129555 IPNHOKFM_00002 1676 8 Oral 0.50 protein_coding synonymous_variant LOW 240A>G Lys80Lys
M0129556 IPNHOKFM_00002 1943 4 Oral 0.25 protein_coding synonymous_variant LOW 507C>T Phe169Phe
M0129557 IPNHOKFM_00002 1949 6 Oral 0.38 protein_coding synonymous_variant LOW 513A>G Thr171Thr
M0129558 IPNHOKFM_00002 2012 3 Oral 0.19 protein_coding missense_variant MODERATE 576A>T Leu192Phe
M0129559 IPNHOKFM_00002 2147 6 Oral 0.38 protein_coding synonymous_variant LOW 711A>G Glu237Glu
M0129560 IPNHOKFM_00002 2231 10 Oral 0.63 protein_coding synonymous_variant LOW 795T>G Leu265Leu
M0129561 IPNHOKFM_00002 2286 4 Oral 0.25 protein_coding missense_variant MODERATE 850A>C Asn284His
M0129562 IPNHOKFM_00002 2501 4 Oral 0.25 protein_coding synonymous_variant LOW 1065C>T Asp355Asp
M0129563 IPNHOKFM_00002 2525 3 Oral 0.19 protein_coding synonymous_variant LOW 1089A>C Val363Val
M0129564 IPNHOKFM_00002 2532 9 Oral 0.56 protein_coding synonymous_variant LOW 1096A>C Arg366Arg
M0129565 IPNHOKFM_00002 2534 5 Oral 0.31 protein_coding missense_variant MODERATE 1098A>C Arg366Ser
M0129566 IPNHOKFM_00002 2576 7 Oral 0.44 protein_coding synonymous_variant LOW 1140T>C Arg380Arg
M0129567 IPNHOKFM_00002 2597 10 Oral 0.63 protein_coding missense_variant MODERATE 1161A>T Glu387Asp
M0129568 IPNHOKFM_00002 2649 10 Oral 0.63 protein_coding missense_variant MODERATE 1213G>A Ala405Thr
M0129569 IPNHOKFM_00003 2791 5 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -126G>A None
M0129570 IPNHOKFM_00004 3791 3 Oral 0.19 protein_coding synonymous_variant LOW 402T>C Asp134Asp
M0129571 IPNHOKFM_00005 5712 7 Oral 0.44 protein_coding synonymous_variant LOW 969T>C Asp323Asp
M0129572 IPNHOKFM_00005 5796 3 Oral 0.19 protein_coding synonymous_variant LOW 1053A>G Glu351Glu
M0129573 IPNHOKFM_00005 5952 3 Oral 0.19 protein_coding synonymous_variant LOW 1209C>T Val403Val
M0129574 IPNHOKFM_00005 6012 6 Oral 0.38 protein_coding synonymous_variant LOW 1269A>G Glu423Glu
M0129575 IPNHOKFM_00005 6405 6 Oral 0.38 protein_coding synonymous_variant LOW 1662C>T Asn554Asn
M0129576 IPNHOKFM_00005 6546 4 Oral 0.25 protein_coding synonymous_variant LOW 1803G>A Lys601Lys
M0129577 IPNHOKFM_00005 6630 9 Oral 0.56 protein_coding synonymous_variant LOW 1887A>T Ala629Ala
M0129578 IPNHOKFM_00005 6645 11 Oral 0.69 protein_coding synonymous_variant LOW 1902T>C Ile634Ile
M0129579 IPNHOKFM_00005 6798 10 Oral 0.63 protein_coding synonymous_variant LOW 2055C>T Gly685Gly
M0129580 IPNHOKFM_00005 7266 4 Oral 0.25 protein_coding synonymous_variant LOW 2523T>C Asp841Asp
M0129581 IPNHOKFM_00006 8235 5 Oral 0.31 protein_coding synonymous_variant LOW 525A>C Val175Val
M0129582 IPNHOKFM_00006 8556 4 Oral 0.25 protein_coding synonymous_variant LOW 846T>A Gly282Gly
M0129583 IPNHOKFM_00006 9063 7 Oral 0.44 protein_coding synonymous_variant LOW 1353T>A Ile451Ile
M0129584 IPNHOKFM_00007 9364 5 Oral 0.31 protein_coding synonymous_variant LOW 171A>C Thr57Thr
M0129585 IPNHOKFM_00007 9376 5 Oral 0.31 protein_coding synonymous_variant LOW 183T>C Phe61Phe
M0129586 IPNHOKFM_00007 9377 5 Oral 0.31 protein_coding missense_variant MODERATE 184G>A Gly62Ser
M0129587 IPNHOKFM_00007 9384 5 Oral 0.31 protein_coding missense_variant MODERATE 191T>A Phe64Tyr
M0129588 IPNHOKFM_00007 9386 9 Oral 0.56 protein_coding missense_variant MODERATE 193T>G Leu65Val
M0129589 IPNHOKFM_00007 9580 6 Oral 0.38 protein_coding synonymous_variant LOW 387T>C Phe129Phe
M0129590 IPNHOKFM_00007 9823 4 Oral 0.25 protein_coding synonymous_variant LOW 630T>A Pro210Pro
M0129591 IPNHOKFM_00005 10248 4 Oral 0.25 protein_coding downstream_gene_variant MODIFIER *2643C>T None
M0129592 IPNHOKFM_00002 1913 4 Oral 0.25 protein_coding synonymous_variant LOW 477A>C Ile159Ile
M0129593 IPNHOKFM_00002 1931 3 Oral 0.19 protein_coding synonymous_variant LOW 495G>A Glu165Glu
M0129594 IPNHOKFM_00002 2363 5 Oral 0.31 protein_coding synonymous_variant LOW 927C>T Asn309Asn
M0129595 IPNHOKFM_00002 2456 4 Oral 0.25 protein_coding synonymous_variant LOW 1020C>T Cys340Cys
M0129596 IPNHOKFM_00002 2587 3 Oral 0.19 protein_coding missense_variant MODERATE 1151A>G Asn384Ser
M0129597 IPNHOKFM_00002 2643 4 Oral 0.25 protein_coding synonymous_variant LOW 1207T>C Leu403Leu
M0129598 IPNHOKFM_00003 2756 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -161G>A None
M0129599 IPNHOKFM_00003 2757 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -160G>T None
M0129600 IPNHOKFM_00005 4932 3 Oral 0.19 protein_coding synonymous_variant LOW 189G>A Ala63Ala
M0129601 IPNHOKFM_00005 4953 4 Oral 0.25 protein_coding synonymous_variant LOW 210A>G Lys70Lys
M0129602 IPNHOKFM_00005 6087 3 Oral 0.19 protein_coding synonymous_variant LOW 1344C>T Asn448Asn
M0129603 IPNHOKFM_00005 6666 4 Oral 0.25 protein_coding synonymous_variant LOW 1923A>C Gly641Gly
M0129604 IPNHOKFM_00005 7098 4 Oral 0.25 protein_coding synonymous_variant LOW 2355C>T Ile785Ile
M0129605 IPNHOKFM_00005 7134 5 Oral 0.31 protein_coding synonymous_variant LOW 2391G>A Val797Val
M0129606 IPNHOKFM_00007 9796 3 Oral 0.19 protein_coding synonymous_variant LOW 603C>T Asn201Asn
M0129607 IPNHOKFM_00001 551 5 Oral 0.31 protein_coding synonymous_variant LOW 444A>T Pro148Pro
M0129608 IPNHOKFM_00001 572 3 Oral 0.19 protein_coding synonymous_variant LOW 465A>T Leu155Leu
M0129609 IPNHOKFM_00001 779 4 Oral 0.25 protein_coding synonymous_variant LOW 672G>A Glu224Glu
M0129610 IPNHOKFM_00002 1135 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -302C>A None
M0129611 IPNHOKFM_00002 1723 5 Oral 0.31 protein_coding missense_variant MODERATE 287C>A Pro96Gln
M0129612 IPNHOKFM_00002 1787 6 Oral 0.38 protein_coding synonymous_variant LOW 351T>C Gly117Gly
M0129613 IPNHOKFM_00002 1822 5 Oral 0.31 protein_coding missense_variant MODERATE 386G>A Gly129Glu
M0129614 IPNHOKFM_00002 1832 4 Oral 0.25 protein_coding synonymous_variant LOW 396G>A Glu132Glu
M0129615 IPNHOKFM_00002 1853 4 Oral 0.25 protein_coding synonymous_variant LOW 417T>C Pro139Pro
M0129616 IPNHOKFM_00002 1878 4 Oral 0.25 protein_coding missense_variant MODERATE 442A>G Ile148Val
M0129617 IPNHOKFM_00002 1976 3 Oral 0.19 protein_coding synonymous_variant LOW 540C>T His180His
M0129618 IPNHOKFM_00002 1986 4 Oral 0.25 protein_coding missense_variant MODERATE 550T>C Tyr184His
M0129619 IPNHOKFM_00002 2252 4 Oral 0.25 protein_coding synonymous_variant LOW 816T>C Asp272Asp
M0129620 IPNHOKFM_00002 2468 4 Oral 0.25 protein_coding synonymous_variant LOW 1032C>T Ile344Ile
M0129621 IPNHOKFM_00003 3255 3 Oral 0.19 protein_coding synonymous_variant LOW 339T>A Thr113Thr
M0129622 IPNHOKFM_00004 3710 4 Oral 0.25 protein_coding synonymous_variant LOW 321A>G Val107Val
M0129623 IPNHOKFM_00004 4560 3 Oral 0.19 protein_coding missense_variant MODERATE 1171A>G Ser391Gly
M0129624 IPNHOKFM_00005 5262 3 Oral 0.19 protein_coding synonymous_variant LOW 519T>C Val173Val
M0129625 IPNHOKFM_00006 7947 4 Oral 0.25 protein_coding synonymous_variant LOW 237A>G Leu79Leu
M0129626 IPNHOKFM_00007 9378 3 Oral 0.19 protein_coding missense_variant MODERATE 185G>C Gly62Ala
M0129627 IPNHOKFM_00007 9620 4 Oral 0.25 protein_coding missense_variant MODERATE 427T>A Phe143Ile
M0129628 IPNHOKFM_00001 218 4 Oral 0.25 protein_coding synonymous_variant LOW 111A>T Pro37Pro
M0129629 IPNHOKFM_00001 233 3 Oral 0.19 protein_coding synonymous_variant LOW 126C>A Ala42Ala
M0129630 IPNHOKFM_00001 236 3 Oral 0.19 protein_coding synonymous_variant LOW 129T>C Asp43Asp
M0129631 IPNHOKFM_00001 240 3 Oral 0.19 protein_coding missense_variant MODERATE 133C>A Gln45Lys
M0129632 IPNHOKFM_00001 242 3 Oral 0.19 protein_coding missense_variant MODERATE 135A>T Gln45His
M0129633 IPNHOKFM_00002 1018 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -419A>T None
M0129634 IPNHOKFM_00002 1730 6 Oral 0.38 protein_coding synonymous_variant LOW 294T>C Gly98Gly
M0129635 IPNHOKFM_00002 1733 6 Oral 0.38 protein_coding synonymous_variant LOW 297T>C Cys99Cys
M0129636 IPNHOKFM_00002 2054 3 Oral 0.19 protein_coding synonymous_variant LOW 618G>A Val206Val
M0129637 IPNHOKFM_00002 2068 3 Oral 0.19 protein_coding missense_variant MODERATE 632A>G Asn211Ser
M0129638 IPNHOKFM_00002 2081 3 Oral 0.19 protein_coding synonymous_variant LOW 645C>T Asn215Asn
M0129639 IPNHOKFM_00002 2237 3 Oral 0.19 protein_coding synonymous_variant LOW 801C>T Asp267Asp
M0129640 IPNHOKFM_00002 1634 4 Oral 0.25 protein_coding synonymous_variant LOW 198C>T Arg66Arg
M0129641 IPNHOKFM_00007 9319 3 Oral 0.19 protein_coding synonymous_variant LOW 126T>C Phe42Phe
M0129642 IPNHOKFM_00007 9322 4 Oral 0.25 protein_coding synonymous_variant LOW 129G>A Ala43Ala
M0129643 IPNHOKFM_00007 9430 3 Oral 0.19 protein_coding synonymous_variant LOW 237A>G Pro79Pro
M0129644 IPNHOKFM_00004 4049 3 Oral 0.19 protein_coding synonymous_variant LOW 660A>G Glu220Glu
M0129645 IPNHOKFM_00005 5247 3 Oral 0.19 protein_coding synonymous_variant LOW 504A>G Glu168Glu
M0129646 IPNHOKFM_00005 5605 3 Oral 0.19 protein_coding missense_variant MODERATE 862G>A Ala288Thr
M0129647 IPNHOKFM_00005 6267 3 Oral 0.19 protein_coding synonymous_variant LOW 1524T>C Asp508Asp
M0129648 IPNHOKFM_00005 6324 4 Oral 0.25 protein_coding synonymous_variant LOW 1581C>T Asp527Asp
M0129649 IPNHOKFM_00005 6564 4 Oral 0.25 protein_coding synonymous_variant LOW 1821A>G Glu607Glu
M0129650 IPNHOKFM_00002 1142 3 Oral 0.19 protein_coding upstream_gene_variant MODIFIER -295A>T None
M0129651 IPNHOKFM_00006 8067 3 Oral 0.19 protein_coding synonymous_variant LOW 357A>G Leu119Leu
M0129652 IPNHOKFM_00006 8077 3 Oral 0.19 protein_coding missense_variant MODERATE 367C>T Leu123Phe
M0129653 IPNHOKFM_00006 8079 4 Oral 0.25 protein_coding synonymous_variant LOW 369T>A Leu123Leu
M0129654 IPNHOKFM_00002 1700 3 Oral 0.19 protein_coding synonymous_variant LOW 264C>T Ala88Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term