Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2490
  Reference Plasmid   1111525849770701_bin.10__k141_166428
  Reference Plasmid Size   10184
  Reference Plasmid GC Content   0.59
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0041549 HNMLDOPF_00001 2981 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1808C>T None
M0041550 HNMLDOPF_00003 3023 6 Skin 0.08 protein_coding synonymous_variant LOW 1437A>G Thr479Thr
M0041551 HNMLDOPF_00003 3026 6 Skin 0.08 protein_coding synonymous_variant LOW 1434C>A Gly478Gly
M0041552 HNMLDOPF_00003 3068 5 Skin 0.07 protein_coding synonymous_variant LOW 1392G>A Leu464Leu
M0041553 HNMLDOPF_00003 3254 7 Skin 0.09 protein_coding synonymous_variant LOW 1206C>T Ala402Ala
M0041554 HNMLDOPF_00003 3278 6 Skin 0.08 protein_coding synonymous_variant LOW 1182T>C Gly394Gly
M0041555 HNMLDOPF_00003 3291 8 Skin 0.11 protein_coding missense_variant MODERATE 1169T>A Val390Asp
M0041556 HNMLDOPF_00003 3300 16 Skin 0.21 protein_coding missense_variant MODERATE 1160A>G Asp387Gly
M0041557 HNMLDOPF_00004 5226 16 Skin 0.21 protein_coding missense_variant MODERATE 716A>T Lys239Met
M0041558 HNMLDOPF_00005 6284 16 Skin 0.21 protein_coding synonymous_variant LOW 120C>T Cys40Cys
M0041559 HNMLDOPF_00002 6621 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3923A>T None
M0041560 HNMLDOPF_00001 6039 11 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4866G>A None
M0041561 HNMLDOPF_00006 8386 30 Skin 0.39 protein_coding missense_variant MODERATE 360A>C Lys120Asn
M0041562 HNMLDOPF_00002 2636 6 Skin 0.08 protein_coding synonymous_variant LOW 63T>C Ala21Ala
M0041563 HNMLDOPF_00002 2642 7 Skin 0.09 protein_coding synonymous_variant LOW 57T>C Val19Val
M0041564 HNMLDOPF_00002 2663 7 Skin 0.09 protein_coding synonymous_variant LOW 36T>C Thr12Thr
M0041565 HNMLDOPF_00001 2836 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1663T>G None
M0041566 HNMLDOPF_00001 2870 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1697A>G None
M0041567 HNMLDOPF_00001 2926 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1753C>A None
M0041568 HNMLDOPF_00001 2940 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1767A>G None
M0041569 HNMLDOPF_00001 2949 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -1776C>T None
M0041570 HNMLDOPF_00003 4294 19 Skin 0.25 protein_coding missense_variant MODERATE 166T>A Ser56Thr
M0041571 HNMLDOPF_00006 7341 20 Skin 0.26 protein_coding missense_variant MODERATE 1405A>G Thr469Ala
M0041572 HNMLDOPF_00003 8798 14 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4339C>T None
M0041573 HNMLDOPF_00003 8805 14 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4346G>A None
M0041574 HNMLDOPF_00007 9733 12 Skin 0.16 protein_coding synonymous_variant LOW 702G>A Val234Val
M0041575 HNMLDOPF_00007 9943 13 Skin 0.17 protein_coding synonymous_variant LOW 912G>C Ala304Ala
M0041576 HNMLDOPF_00004 5773 10 Skin 0.13 protein_coding missense_variant MODERATE 169G>A Ala57Thr
M0041577 HNMLDOPF_00001 105 5 Skin 0.07 protein_coding downstream_gene_variant MODIFIER *43A>C None
M0041578 HNMLDOPF_00001 106 5 Skin 0.07 protein_coding downstream_gene_variant MODIFIER *42C>A None
M0041579 HNMLDOPF_00001 204 7 Skin 0.09 protein_coding missense_variant MODERATE 970C>A Gln324Lys
M0041580 HNMLDOPF_00001 221 8 Skin 0.11 protein_coding missense_variant MODERATE 953C>T Ala318Val
M0041581 HNMLDOPF_00001 249 7 Skin 0.09 protein_coding missense_variant MODERATE 925T>A Cys309Ser
M0041582 HNMLDOPF_00001 252 6 Skin 0.08 protein_coding missense_variant MODERATE 922C>T Leu308Phe
M0041583 HNMLDOPF_00001 265 7 Skin 0.09 protein_coding synonymous_variant LOW 909G>A Leu303Leu
M0041584 HNMLDOPF_00001 339 5 Skin 0.07 protein_coding missense_variant MODERATE 835A>G Thr279Ala
M0041585 HNMLDOPF_00001 600 5 Skin 0.07 protein_coding missense_variant MODERATE 574G>A Val192Ile
M0041586 HNMLDOPF_00001 610 5 Skin 0.07 protein_coding synonymous_variant LOW 564G>A Ala188Ala
M0041587 HNMLDOPF_00001 625 4 Skin 0.05 protein_coding synonymous_variant LOW 549T>C Ala183Ala
M0041588 HNMLDOPF_00001 627 5 Skin 0.07 protein_coding missense_variant MODERATE 547G>A Ala183Thr
M0041589 HNMLDOPF_00001 628 5 Skin 0.07 protein_coding synonymous_variant LOW 546A>G Leu182Leu
M0041590 HNMLDOPF_00001 646 5 Skin 0.07 protein_coding synonymous_variant LOW 528A>G Pro176Pro
M0041591 HNMLDOPF_00001 657 5 Skin 0.07 protein_coding missense_variant MODERATE 517G>A Val173Ile
M0041592 HNMLDOPF_00001 691 5 Skin 0.07 protein_coding synonymous_variant LOW 483C>T Ala161Ala
M0041593 HNMLDOPF_00001 742 5 Skin 0.07 protein_coding synonymous_variant LOW 432T>C Ile144Ile
M0041594 HNMLDOPF_00001 757 5 Skin 0.07 protein_coding synonymous_variant LOW 417C>T Ile139Ile
M0041595 HNMLDOPF_00001 763 5 Skin 0.07 protein_coding synonymous_variant LOW 411G>A Thr137Thr
M0041596 HNMLDOPF_00001 765 4 Skin 0.05 protein_coding missense_variant MODERATE 409A>G Thr137Ala
M0041597 HNMLDOPF_00001 773 5 Skin 0.07 protein_coding missense_variant MODERATE 401T>G Leu134Arg
M0041598 HNMLDOPF_00001 775 5 Skin 0.07 protein_coding synonymous_variant LOW 399G>A Ser133Ser
M0041599 HNMLDOPF_00001 801 5 Skin 0.07 protein_coding synonymous_variant LOW 373T>C Leu125Leu
M0041600 HNMLDOPF_00001 805 5 Skin 0.07 protein_coding synonymous_variant LOW 369T>C Val123Val
M0041601 HNMLDOPF_00001 806 5 Skin 0.07 protein_coding missense_variant MODERATE 368T>C Val123Ala
M0041602 HNMLDOPF_00001 821 5 Skin 0.07 protein_coding missense_variant MODERATE 353T>C Val118Ala
M0041603 HNMLDOPF_00001 822 5 Skin 0.07 protein_coding missense_variant MODERATE 352G>A Val118Ile
M0041604 HNMLDOPF_00001 827 5 Skin 0.07 protein_coding missense_variant MODERATE 347A>C Glu116Ala
M0041605 HNMLDOPF_00001 844 5 Skin 0.07 protein_coding synonymous_variant LOW 330T>C Gly110Gly
M0041606 HNMLDOPF_00001 892 5 Skin 0.07 protein_coding synonymous_variant LOW 282C>T Gly94Gly
M0041607 HNMLDOPF_00001 901 5 Skin 0.07 protein_coding synonymous_variant LOW 273C>G Ala91Ala
M0041608 HNMLDOPF_00001 910 5 Skin 0.07 protein_coding synonymous_variant LOW 264A>T Val88Val
M0041609 HNMLDOPF_00001 930 5 Skin 0.07 protein_coding missense_variant MODERATE 244G>A Val82Ile
M0041610 HNMLDOPF_00001 962 4 Skin 0.05 protein_coding missense_variant MODERATE 212C>G Ala71Gly
M0041611 HNMLDOPF_00001 966 4 Skin 0.05 protein_coding missense_variant MODERATE 208A>G Ile70Val
M0041612 HNMLDOPF_00001 981 4 Skin 0.05 protein_coding missense_variant MODERATE 193G>A Ala65Thr
M0041613 HNMLDOPF_00001 988 4 Skin 0.05 protein_coding synonymous_variant LOW 186T>C Tyr62Tyr
M0041614 HNMLDOPF_00001 1006 4 Skin 0.05 protein_coding synonymous_variant LOW 168C>T Ser56Ser
M0041615 HNMLDOPF_00001 1024 4 Skin 0.05 protein_coding synonymous_variant LOW 150T>C Phe50Phe
M0041616 HNMLDOPF_00001 1033 4 Skin 0.05 protein_coding synonymous_variant LOW 141A>G Ala47Ala
M0041617 HNMLDOPF_00001 1048 4 Skin 0.05 protein_coding synonymous_variant LOW 126C>G Thr42Thr
M0041618 HNMLDOPF_00001 1066 4 Skin 0.05 protein_coding synonymous_variant LOW 108G>C Arg36Arg
M0041619 HNMLDOPF_00001 1090 4 Skin 0.05 protein_coding synonymous_variant LOW 84A>G Leu28Leu
M0041620 HNMLDOPF_00001 1117 4 Skin 0.05 protein_coding synonymous_variant LOW 57T>C Asp19Asp
M0041621 HNMLDOPF_00001 1132 4 Skin 0.05 protein_coding synonymous_variant LOW 42G>A Leu14Leu
M0041622 HNMLDOPF_00001 1150 4 Skin 0.05 protein_coding synonymous_variant LOW 24C>T Asn8Asn
M0041623 HNMLDOPF_00001 1166 4 Skin 0.05 protein_coding missense_variant MODERATE 8C>T Ser3Leu
M0041624 HNMLDOPF_00001 1167 4 Skin 0.05 protein_coding missense_variant MODERATE 7T>G Ser3Ala
M0041625 HNMLDOPF_00001 1173 4 Skin 0.05 protein_coding start_lost HIGH 1A>G Met1?
M0041626 HNMLDOPF_00001 1175 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2A>G None
M0041627 HNMLDOPF_00001 1178 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -5G>A None
M0041628 HNMLDOPF_00001 1216 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -43G>A None
M0041629 HNMLDOPF_00001 1245 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -72C>T None
M0041630 HNMLDOPF_00001 1263 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -90T>C None
M0041631 HNMLDOPF_00001 1274 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -101T>C None
M0041632 HNMLDOPF_00001 1275 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -102A>G None
M0041633 HNMLDOPF_00001 1277 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -104G>A None
M0041634 HNMLDOPF_00001 1280 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -107C>A None
M0041635 HNMLDOPF_00001 1290 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -117C>T None
M0041636 HNMLDOPF_00001 1321 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -148G>T None
M0041637 HNMLDOPF_00001 1324 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -151A>G None
M0041638 HNMLDOPF_00001 1353 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -180T>C None
M0041639 HNMLDOPF_00001 1363 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -190A>G None
M0041640 HNMLDOPF_00001 1364 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -191A>G None
M0041641 HNMLDOPF_00002 1426 4 Skin 0.05 protein_coding missense_variant MODERATE 1273A>G Asn425Asp
M0041642 HNMLDOPF_00002 1508 5 Skin 0.07 protein_coding synonymous_variant LOW 1191G>A Glu397Glu
M0041643 HNMLDOPF_00002 1607 5 Skin 0.07 protein_coding synonymous_variant LOW 1092T>C Tyr364Tyr
M0041644 HNMLDOPF_00002 1622 5 Skin 0.07 protein_coding synonymous_variant LOW 1077G>A Pro359Pro
M0041645 HNMLDOPF_00002 1640 5 Skin 0.07 protein_coding synonymous_variant LOW 1059G>A Lys353Lys
M0041646 HNMLDOPF_00002 1649 4 Skin 0.05 protein_coding synonymous_variant LOW 1050C>T Asp350Asp
M0041647 HNMLDOPF_00002 1781 5 Skin 0.07 protein_coding synonymous_variant LOW 918G>A Arg306Arg
M0041648 HNMLDOPF_00002 1892 4 Skin 0.05 protein_coding synonymous_variant LOW 807C>T Ala269Ala
M0041649 HNMLDOPF_00002 1927 5 Skin 0.07 protein_coding synonymous_variant LOW 772C>T Leu258Leu
M0041650 HNMLDOPF_00002 1946 5 Skin 0.07 protein_coding synonymous_variant LOW 753T>C Val251Val
M0041651 HNMLDOPF_00002 1994 4 Skin 0.05 protein_coding synonymous_variant LOW 705G>A Ser235Ser
M0041652 HNMLDOPF_00002 2080 5 Skin 0.07 protein_coding missense_variant MODERATE 619C>T Pro207Ser
M0041653 HNMLDOPF_00002 2291 7 Skin 0.09 protein_coding synonymous_variant LOW 408G>A Ala136Ala
M0041654 HNMLDOPF_00002 2299 7 Skin 0.09 protein_coding synonymous_variant LOW 400T>C Leu134Leu
M0041655 HNMLDOPF_00002 2465 6 Skin 0.08 protein_coding synonymous_variant LOW 234A>G Glu78Glu
M0041656 HNMLDOPF_00002 2467 6 Skin 0.08 protein_coding missense_variant MODERATE 232G>A Glu78Lys
M0041657 HNMLDOPF_00003 3620 5 Skin 0.07 protein_coding synonymous_variant LOW 840C>T Ser280Ser
M0041658 HNMLDOPF_00003 3715 3 Skin 0.04 protein_coding missense_variant MODERATE 745G>A Ala249Thr
M0041659 HNMLDOPF_00003 3761 9 Skin 0.12 protein_coding synonymous_variant LOW 699A>C Gly233Gly
M0041660 HNMLDOPF_00003 4027 6 Skin 0.08 protein_coding missense_variant MODERATE 433A>G Ile145Val
M0041661 HNMLDOPF_00003 4061 5 Skin 0.07 protein_coding synonymous_variant LOW 399C>T Val133Val
M0041662 HNMLDOPF_00003 4133 6 Skin 0.08 protein_coding synonymous_variant LOW 327T>C Asp109Asp
M0041663 HNMLDOPF_00003 4277 8 Skin 0.11 protein_coding synonymous_variant LOW 183T>C Thr61Thr
M0041664 HNMLDOPF_00003 4286 8 Skin 0.11 protein_coding synonymous_variant LOW 174G>A Arg58Arg
M0041665 HNMLDOPF_00003 4287 8 Skin 0.11 protein_coding missense_variant MODERATE 173G>A Arg58Lys
M0041666 HNMLDOPF_00003 4385 6 Skin 0.08 protein_coding synonymous_variant LOW 75G>A Ala25Ala
M0041667 HNMLDOPF_00001 4550 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3377G>A None
M0041668 HNMLDOPF_00001 4588 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3415G>A None
M0041669 HNMLDOPF_00001 4604 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3431A>G None
M0041670 HNMLDOPF_00001 4646 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3473T>C None
M0041671 HNMLDOPF_00001 4716 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3543T>C None
M0041672 HNMLDOPF_00004 4811 9 Skin 0.12 protein_coding synonymous_variant LOW 1131A>G Ser377Ser
M0041673 HNMLDOPF_00004 4880 5 Skin 0.07 protein_coding synonymous_variant LOW 1062G>A Leu354Leu
M0041674 HNMLDOPF_00004 4948 5 Skin 0.07 protein_coding missense_variant MODERATE 994A>G Ile332Val
M0041675 HNMLDOPF_00004 5000 5 Skin 0.07 protein_coding synonymous_variant LOW 942T>C Tyr314Tyr
M0041676 HNMLDOPF_00004 5015 5 Skin 0.07 protein_coding synonymous_variant LOW 927G>A Lys309Lys
M0041677 HNMLDOPF_00004 5055 6 Skin 0.08 protein_coding missense_variant MODERATE 887C>T Ala296Val
M0041678 HNMLDOPF_00004 5123 6 Skin 0.08 protein_coding synonymous_variant LOW 819G>A Val273Val
M0041679 HNMLDOPF_00004 5144 6 Skin 0.08 protein_coding missense_variant MODERATE 798C>A Asn266Lys
M0041680 HNMLDOPF_00004 5152 6 Skin 0.08 protein_coding missense_variant MODERATE 790G>A Asp264Asn
M0041681 HNMLDOPF_00004 5168 5 Skin 0.07 protein_coding synonymous_variant LOW 774G>A Lys258Lys
M0041682 HNMLDOPF_00004 5186 6 Skin 0.08 protein_coding synonymous_variant LOW 756T>C Ile252Ile
M0041683 HNMLDOPF_00004 5204 6 Skin 0.08 protein_coding synonymous_variant LOW 738A>G Gln246Gln
M0041684 HNMLDOPF_00004 5315 7 Skin 0.09 protein_coding synonymous_variant LOW 627T>C Asp209Asp
M0041685 HNMLDOPF_00004 5342 6 Skin 0.08 protein_coding synonymous_variant LOW 600T>C His200His
M0041686 HNMLDOPF_00004 5350 6 Skin 0.08 protein_coding missense_variant MODERATE 592A>C Ile198Leu
M0041687 HNMLDOPF_00004 5409 5 Skin 0.07 protein_coding missense_variant MODERATE 533G>A Arg178Lys
M0041688 HNMLDOPF_00004 5483 8 Skin 0.11 protein_coding synonymous_variant LOW 459C>T Asp153Asp
M0041689 HNMLDOPF_00004 5487 8 Skin 0.11 protein_coding missense_variant MODERATE 455G>A Ser152Asn
M0041690 HNMLDOPF_00004 5516 6 Skin 0.08 protein_coding synonymous_variant LOW 426C>T Gly142Gly
M0041691 HNMLDOPF_00004 5537 8 Skin 0.11 protein_coding synonymous_variant LOW 405A>G Lys135Lys
M0041692 HNMLDOPF_00004 5557 8 Skin 0.11 protein_coding missense_variant MODERATE 385T>C Ser129Pro
M0041693 HNMLDOPF_00004 5666 5 Skin 0.07 protein_coding synonymous_variant LOW 276A>G Glu92Glu
M0041694 HNMLDOPF_00004 5690 5 Skin 0.07 protein_coding synonymous_variant LOW 252G>A Lys84Lys
M0041695 HNMLDOPF_00004 5741 8 Skin 0.11 protein_coding synonymous_variant LOW 201T>A Pro67Pro
M0041696 HNMLDOPF_00004 5846 4 Skin 0.05 protein_coding synonymous_variant LOW 96T>C Asn32Asn
M0041697 HNMLDOPF_00005 6258 5 Skin 0.07 protein_coding missense_variant MODERATE 94A>G Thr32Ala
M0041698 HNMLDOPF_00005 6263 3 Skin 0.04 protein_coding synonymous_variant LOW 99C>T Ile33Ile
M0041699 HNMLDOPF_00002 6722 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4024A>G None
M0041700 HNMLDOPF_00002 6735 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4037A>G None
M0041701 HNMLDOPF_00002 6988 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4290A>G None
M0041702 HNMLDOPF_00002 7015 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4317T>G None
M0041703 HNMLDOPF_00002 7037 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4339C>G None
M0041704 HNMLDOPF_00002 7123 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4425T>C None
M0041705 HNMLDOPF_00002 7152 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4454A>G None
M0041706 HNMLDOPF_00002 7165 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4467A>G None
M0041707 HNMLDOPF_00002 7183 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4485G>C None
M0041708 HNMLDOPF_00006 7339 3 Skin 0.04 protein_coding synonymous_variant LOW 1407C>T Thr469Thr
M0041709 HNMLDOPF_00006 8278 3 Skin 0.04 protein_coding synonymous_variant LOW 468A>C Val156Val
M0041710 HNMLDOPF_00007 9265 3 Skin 0.04 protein_coding synonymous_variant LOW 234T>G Val78Val
M0041711 HNMLDOPF_00007 9336 3 Skin 0.04 protein_coding missense_variant MODERATE 305C>T Ala102Val
M0041712 HNMLDOPF_00007 9792 3 Skin 0.04 protein_coding missense_variant MODERATE 761T>C Met254Thr
M0041713 HNMLDOPF_00007 9830 4 Skin 0.05 protein_coding missense_variant MODERATE 799G>A Val267Ile
M0041714 HNMLDOPF_00001 6098 5 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4925T>C None
M0041715 HNMLDOPF_00003 3928 5 Skin 0.07 protein_coding missense_variant MODERATE 532G>A Ala178Thr
M0041716 HNMLDOPF_00003 3959 6 Skin 0.08 protein_coding synonymous_variant LOW 501C>A Gly167Gly
M0041717 HNMLDOPF_00003 8770 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4311C>T None
M0041718 HNMLDOPF_00001 438 4 Skin 0.05 protein_coding synonymous_variant LOW 736T>C Leu246Leu
M0041719 HNMLDOPF_00001 443 4 Skin 0.05 protein_coding missense_variant MODERATE 731A>G Gln244Arg
M0041720 HNMLDOPF_00001 452 4 Skin 0.05 protein_coding missense_variant MODERATE 722C>T Thr241Ile
M0041721 HNMLDOPF_00001 457 4 Skin 0.05 protein_coding synonymous_variant LOW 717T>C Gly239Gly
M0041722 HNMLDOPF_00001 463 3 Skin 0.04 protein_coding synonymous_variant LOW 711G>A Gly237Gly
M0041723 HNMLDOPF_00001 464 4 Skin 0.05 protein_coding missense_variant MODERATE 710G>A Gly237Glu
M0041724 HNMLDOPF_00001 469 4 Skin 0.05 protein_coding synonymous_variant LOW 705A>G Glu235Glu
M0041725 HNMLDOPF_00001 496 3 Skin 0.04 protein_coding synonymous_variant LOW 678G>A Gly226Gly
M0041726 HNMLDOPF_00001 499 4 Skin 0.05 protein_coding synonymous_variant LOW 675T>C His225His
M0041727 HNMLDOPF_00001 505 4 Skin 0.05 protein_coding synonymous_variant LOW 669C>T Leu223Leu
M0041728 HNMLDOPF_00001 540 4 Skin 0.05 protein_coding missense_variant MODERATE 634A>G Ile212Val
M0041729 HNMLDOPF_00001 541 4 Skin 0.05 protein_coding synonymous_variant LOW 633T>G Ser211Ser
M0041730 HNMLDOPF_00001 571 4 Skin 0.05 protein_coding synonymous_variant LOW 603T>C Val201Val
M0041731 HNMLDOPF_00002 2437 3 Skin 0.04 protein_coding missense_variant MODERATE 262C>G Leu88Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term