Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2497
  Reference Plasmid   1111525849771545_bin.25__k141_79883
  Reference Plasmid Size   23860
  Reference Plasmid GC Content   0.62
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0041807 AGAAMKOF_00004 3452 4 Skin 0.07 protein_coding synonymous_variant LOW 621A>G Gln207Gln
M0041808 AGAAMKOF_00004 3551 3 Skin 0.05 protein_coding synonymous_variant LOW 522A>G Ser174Ser
M0041809 AGAAMKOF_00005 4561 3 Skin 0.05 protein_coding synonymous_variant LOW 204T>G Gly68Gly
M0041810 AGAAMKOF_00006 5938 3 Skin 0.05 protein_coding synonymous_variant LOW 297T>C His99His
M0041811 AGAAMKOF_00006 5956 3 Skin 0.05 protein_coding synonymous_variant LOW 279C>T Ile93Ile
M0041812 AGAAMKOF_00006 5989 3 Skin 0.05 protein_coding synonymous_variant LOW 246G>A Ala82Ala
M0041813 AGAAMKOF_00006 5992 3 Skin 0.05 protein_coding synonymous_variant LOW 243G>T Thr81Thr
M0041814 AGAAMKOF_00006 5995 3 Skin 0.05 protein_coding synonymous_variant LOW 240T>C Asp80Asp
M0041815 AGAAMKOF_00007 7422 4 Skin 0.07 protein_coding synonymous_variant LOW 813A>G Ala271Ala
M0041816 AGAAMKOF_00007 7485 25 Skin 0.44 protein_coding synonymous_variant LOW 876T>C Asp292Asp
M0041817 AGAAMKOF_00007 7506 25 Skin 0.44 protein_coding synonymous_variant LOW 897A>C Ala299Ala
M0041818 AGAAMKOF_00010 9124 8 Skin 0.14 protein_coding synonymous_variant LOW 474T>C Ala158Ala
M0041819 AGAAMKOF_00012 12083 40 Skin 0.70 protein_coding missense_variant MODERATE 478A>G Asn160Asp
M0041820 AGAAMKOF_00007 7032 19 Skin 0.33 protein_coding synonymous_variant LOW 423G>A Glu141Glu
M0041821 AGAAMKOF_00007 7200 22 Skin 0.39 protein_coding synonymous_variant LOW 591A>G Glu197Glu
M0041822 AGAAMKOF_00007 7209 22 Skin 0.39 protein_coding synonymous_variant LOW 600C>T Asn200Asn
M0041823 AGAAMKOF_00010 8820 4 Skin 0.07 protein_coding missense_variant MODERATE 170G>A Gly57Asp
M0041824 AGAAMKOF_00013 13542 5 Skin 0.09 protein_coding synonymous_variant LOW 732T>C Gly244Gly
M0041825 AGAAMKOF_00010 9235 5 Skin 0.09 protein_coding synonymous_variant LOW 585A>C Ala195Ala
M0041826 AGAAMKOF_00010 9250 3 Skin 0.05 protein_coding synonymous_variant LOW 600A>G Val200Val
M0041827 AGAAMKOF_00010 9274 4 Skin 0.07 protein_coding synonymous_variant LOW 624A>G Thr208Thr
M0041828 AGAAMKOF_00010 9310 3 Skin 0.05 protein_coding synonymous_variant LOW 660C>T Arg220Arg
M0041829 AGAAMKOF_00011 11392 11 Skin 0.19 protein_coding synonymous_variant LOW 1218A>G Gln406Gln
M0041830 AGAAMKOF_00015 15209 6 Skin 0.11 protein_coding missense_variant MODERATE 1088A>G Lys363Arg
M0041831 AGAAMKOF_00015 15645 8 Skin 0.14 protein_coding synonymous_variant LOW 1524T>G Val508Val
M0041832 AGAAMKOF_00016 16924 6 Skin 0.11 protein_coding synonymous_variant LOW 196T>C Leu66Leu
M0041833 AGAAMKOF_00018 18117 4 Skin 0.07 protein_coding synonymous_variant LOW 291A>G Pro97Pro
M0041834 AGAAMKOF_00012 11615 3 Skin 0.05 protein_coding missense_variant MODERATE 10T>C Ser4Pro
M0041835 AGAAMKOF_00013 13434 3 Skin 0.05 protein_coding synonymous_variant LOW 624A>G Gln208Gln
M0041836 AGAAMKOF_00007 6681 6 Skin 0.11 protein_coding missense_variant MODERATE 72C>A Asn24Lys
M0041837 AGAAMKOF_00007 6840 3 Skin 0.05 protein_coding synonymous_variant LOW 231T>C Tyr77Tyr
M0041838 AGAAMKOF_00009 8258 8 Skin 0.14 protein_coding missense_variant MODERATE 157G>A Glu53Lys
M0041839 AGAAMKOF_00018 18024 4 Skin 0.07 protein_coding synonymous_variant LOW 384T>C Cys128Cys
M0041840 AGAAMKOF_00018 18027 4 Skin 0.07 protein_coding synonymous_variant LOW 381A>G Gln127Gln
M0041841 AGAAMKOF_00010 8800 3 Skin 0.05 protein_coding synonymous_variant LOW 150T>C Asp50Asp
M0041842 AGAAMKOF_00010 8803 3 Skin 0.05 protein_coding synonymous_variant LOW 153C>T Leu51Leu
M0041843 AGAAMKOF_00010 8809 3 Skin 0.05 protein_coding synonymous_variant LOW 159G>C Ala53Ala
M0041844 AGAAMKOF_00010 8812 3 Skin 0.05 protein_coding synonymous_variant LOW 162T>C Ile54Ile
M0041845 AGAAMKOF_00010 8818 3 Skin 0.05 protein_coding synonymous_variant LOW 168C>T Gly56Gly
M0041846 AGAAMKOF_00010 8821 3 Skin 0.05 protein_coding synonymous_variant LOW 171T>C Gly57Gly
M0041847 AGAAMKOF_00010 8839 3 Skin 0.05 protein_coding synonymous_variant LOW 189G>A Glu63Glu
M0041848 AGAAMKOF_00010 8854 4 Skin 0.07 protein_coding synonymous_variant LOW 204C>G Ala68Ala
M0041849 AGAAMKOF_00010 8857 3 Skin 0.05 protein_coding synonymous_variant LOW 207C>A Pro69Pro
M0041850 AGAAMKOF_00009 8353 3 Skin 0.05 protein_coding synonymous_variant LOW 252C>T Ile84Ile
M0041851 AGAAMKOF_00009 8392 5 Skin 0.09 protein_coding synonymous_variant LOW 291C>A Pro97Pro
M0041852 AGAAMKOF_00009 8416 3 Skin 0.05 protein_coding synonymous_variant LOW 315C>T Gly105Gly
M0041853 AGAAMKOF_00009 8419 3 Skin 0.05 protein_coding missense_variant MODERATE 318G>T Leu106Phe
M0041854 AGAAMKOF_00009 8425 4 Skin 0.07 protein_coding synonymous_variant LOW 324T>C Arg108Arg
M0041855 AGAAMKOF_00009 8434 4 Skin 0.07 protein_coding synonymous_variant LOW 333T>C Arg111Arg
M0041856 AGAAMKOF_00009 8453 3 Skin 0.05 protein_coding missense_variant MODERATE 352G>A Val118Ile
M0041857 AGAAMKOF_00009 8455 4 Skin 0.07 protein_coding synonymous_variant LOW 354T>C Val118Val
M0041858 AGAAMKOF_00009 8473 3 Skin 0.05 protein_coding synonymous_variant LOW 372C>T Val124Val
M0041859 AGAAMKOF_00009 8533 3 Skin 0.05 protein_coding synonymous_variant LOW 432C>T Ser144Ser
M0041860 AGAAMKOF_00022 23729 7 Skin 0.12 protein_coding synonymous_variant LOW 1173C>T Tyr391Tyr
M0041861 AGAAMKOF_00022 23744 7 Skin 0.12 protein_coding synonymous_variant LOW 1188C>G Ala396Ala
M0041862 AGAAMKOF_00022 23753 7 Skin 0.12 protein_coding synonymous_variant LOW 1197G>C Ala399Ala
M0041863 AGAAMKOF_00022 23777 7 Skin 0.12 protein_coding synonymous_variant LOW 1221C>T Arg407Arg
M0041864 AGAAMKOF_00019 19210 3 Skin 0.05 protein_coding synonymous_variant LOW 546A>C Ala182Ala
M0041865 AGAAMKOF_00019 19753 3 Skin 0.05 protein_coding synonymous_variant LOW 1089T>C Thr363Thr
M0041866 AGAAMKOF_00012 12295 4 Skin 0.07 protein_coding synonymous_variant LOW 690C>T Asn230Asn
M0041867 AGAAMKOF_00015 14691 3 Skin 0.05 protein_coding synonymous_variant LOW 570A>G Val190Val
M0041868 AGAAMKOF_00009 8140 3 Skin 0.05 protein_coding synonymous_variant LOW 39C>T Ala13Ala
M0041869 AGAAMKOF_00009 8143 3 Skin 0.05 protein_coding synonymous_variant LOW 42C>T Phe14Phe
M0041870 AGAAMKOF_00009 8147 3 Skin 0.05 protein_coding missense_variant MODERATE 46G>C Glu16Gln
M0041871 AGAAMKOF_00009 8148 3 Skin 0.05 protein_coding missense_variant MODERATE 47A>C Glu16Ala
M0041872 AGAAMKOF_00009 8149 3 Skin 0.05 protein_coding synonymous_variant LOW 48A>G Glu16Glu
M0041873 AGAAMKOF_00009 8155 3 Skin 0.05 protein_coding synonymous_variant LOW 54A>T Gly18Gly
M0041874 AGAAMKOF_00009 8158 3 Skin 0.05 protein_coding synonymous_variant LOW 57C>T Asp19Asp
M0041875 AGAAMKOF_00009 8182 3 Skin 0.05 protein_coding synonymous_variant LOW 81T>C Asp27Asp
M0041876 AGAAMKOF_00013 12780 6 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -31C>G None
M0041877 AGAAMKOF_00015 15735 3 Skin 0.05 protein_coding synonymous_variant LOW 1614A>C Ala538Ala
M0041878 AGAAMKOF_00019 18817 5 Skin 0.09 protein_coding synonymous_variant LOW 153C>G Val51Val
M0041879 AGAAMKOF_00021 21760 3 Skin 0.05 protein_coding synonymous_variant LOW 330A>G Lys110Lys
M0041880 AGAAMKOF_00013 12957 4 Skin 0.07 protein_coding synonymous_variant LOW 147C>G Thr49Thr
M0041881 AGAAMKOF_00014 13758 4 Skin 0.07 protein_coding missense_variant MODERATE 215G>T Trp72Leu
M0041882 AGAAMKOF_00017 17527 5 Skin 0.09 protein_coding synonymous_variant LOW 276A>C Arg92Arg
M0041883 AGAAMKOF_00010 9650 6 Skin 0.11 protein_coding missense_variant MODERATE 1000G>A Ala334Thr
M0041884 AGAAMKOF_00004 4038 3 Skin 0.05 protein_coding missense_variant MODERATE 35C>T Ala12Val
M0041885 AGAAMKOF_00001 263 3 Skin 0.05 protein_coding synonymous_variant LOW 39T>C Ser13Ser
M0041886 AGAAMKOF_00001 266 3 Skin 0.05 protein_coding synonymous_variant LOW 42C>T Arg14Arg
M0041887 AGAAMKOF_00001 293 3 Skin 0.05 protein_coding synonymous_variant LOW 69T>C Ile23Ile
M0041888 AGAAMKOF_00001 302 3 Skin 0.05 protein_coding synonymous_variant LOW 78G>A Glu26Glu
M0041889 AGAAMKOF_00001 308 3 Skin 0.05 protein_coding synonymous_variant LOW 84C>T Gly28Gly
M0041890 AGAAMKOF_00001 326 3 Skin 0.05 protein_coding synonymous_variant LOW 102C>T Ala34Ala
M0041891 AGAAMKOF_00001 329 3 Skin 0.05 protein_coding synonymous_variant LOW 105T>C Gly35Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
AGAAMKOF_00007 AXQ47445.1|CE4 100 2.63e-238 1 308 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term