Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2506
  Reference Plasmid   1111525849771679_bin.1__k141_469566
  Reference Plasmid Size   13586
  Reference Plasmid GC Content   0.68
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0042407 JLIDGFIA_00003 1443 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -87C>A None
M0042408 JLIDGFIA_00003 1455 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -75G>T None
M0042409 JLIDGFIA_00003 1628 5 Skin 0.22 protein_coding synonymous_variant LOW 99G>C Gly33Gly
M0042410 JLIDGFIA_00004 1996 7 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -88C>G None
M0042411 JLIDGFIA_00004 2004 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -80G>T None
M0042412 JLIDGFIA_00004 2596 6 Skin 0.26 protein_coding synonymous_variant LOW 513T>C Asn171Asn
M0042413 JLIDGFIA_00005 2747 6 Skin 0.26 protein_coding missense_variant MODERATE 892C>A Leu298Met
M0042414 JLIDGFIA_00005 2763 7 Skin 0.30 protein_coding synonymous_variant LOW 876T>C Thr292Thr
M0042415 JLIDGFIA_00005 2775 5 Skin 0.22 protein_coding synonymous_variant LOW 864A>G Val288Val
M0042416 JLIDGFIA_00005 2871 6 Skin 0.26 protein_coding synonymous_variant LOW 768A>G Ser256Ser
M0042417 JLIDGFIA_00005 3141 5 Skin 0.22 protein_coding synonymous_variant LOW 498C>G Ala166Ala
M0042418 JLIDGFIA_00005 3651 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -13C>A None
M0042419 JLIDGFIA_00005 3657 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -19A>G None
M0042420 JLIDGFIA_00005 3665 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -27G>C None
M0042421 JLIDGFIA_00005 3724 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -86G>A None
M0042422 JLIDGFIA_00005 3729 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -91G>A None
M0042423 JLIDGFIA_00006 4123 6 Skin 0.26 protein_coding synonymous_variant LOW 246G>C Ala82Ala
M0042424 JLIDGFIA_00006 4135 6 Skin 0.26 protein_coding synonymous_variant LOW 258T>C Asp86Asp
M0042425 JLIDGFIA_00006 4153 5 Skin 0.22 protein_coding synonymous_variant LOW 276C>G Val92Val
M0042426 JLIDGFIA_00006 4156 6 Skin 0.26 protein_coding synonymous_variant LOW 279C>G Val93Val
M0042427 JLIDGFIA_00006 4226 6 Skin 0.26 protein_coding missense_variant MODERATE 349C>A Leu117Ile
M0042428 JLIDGFIA_00006 4526 6 Skin 0.26 protein_coding synonymous_variant LOW 649T>C Leu217Leu
M0042429 JLIDGFIA_00006 4632 6 Skin 0.26 protein_coding missense_variant MODERATE 755A>G Lys252Arg
M0042430 JLIDGFIA_00006 4717 5 Skin 0.22 protein_coding synonymous_variant LOW 840G>C Ala280Ala
M0042431 JLIDGFIA_00006 4741 5 Skin 0.22 protein_coding synonymous_variant LOW 864C>G Leu288Leu
M0042432 JLIDGFIA_00006 4774 5 Skin 0.22 protein_coding synonymous_variant LOW 897C>G Gly299Gly
M0042433 JLIDGFIA_00006 4777 5 Skin 0.22 protein_coding synonymous_variant LOW 900G>C Ser300Ser
M0042434 JLIDGFIA_00006 4792 5 Skin 0.22 protein_coding synonymous_variant LOW 915T>C Gly305Gly
M0042435 JLIDGFIA_00001 860 4 Skin 0.17 protein_coding synonymous_variant LOW 594T>C Ile198Ile
M0042436 JLIDGFIA_00001 882 4 Skin 0.17 protein_coding missense_variant MODERATE 616G>C Val206Leu
M0042437 JLIDGFIA_00001 1040 4 Skin 0.17 protein_coding synonymous_variant LOW 774A>G Glu258Glu
M0042438 JLIDGFIA_00001 1043 4 Skin 0.17 protein_coding synonymous_variant LOW 777T>C Arg259Arg
M0042439 JLIDGFIA_00001 1103 4 Skin 0.17 protein_coding synonymous_variant LOW 837G>A Glu279Glu
M0042440 JLIDGFIA_00001 1127 4 Skin 0.17 protein_coding synonymous_variant LOW 861T>C Asp287Asp
M0042441 JLIDGFIA_00001 1154 4 Skin 0.17 protein_coding synonymous_variant LOW 888C>A Thr296Thr
M0042442 JLIDGFIA_00003 1418 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -112T>G None
M0042443 JLIDGFIA_00003 1447 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -83A>G None
M0042444 JLIDGFIA_00003 1961 4 Skin 0.17 protein_coding synonymous_variant LOW 432C>T Ala144Ala
M0042445 JLIDGFIA_00004 2099 6 Skin 0.26 protein_coding synonymous_variant LOW 16C>T Leu6Leu
M0042446 JLIDGFIA_00004 2128 6 Skin 0.26 protein_coding synonymous_variant LOW 45C>A Pro15Pro
M0042447 JLIDGFIA_00006 2663 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -1215T>C None
M0042448 JLIDGFIA_00005 3485 5 Skin 0.22 protein_coding missense_variant MODERATE 154A>C Asn52His
M0042449 JLIDGFIA_00005 3494 5 Skin 0.22 protein_coding missense_variant MODERATE 145G>A Glu49Lys
M0042450 JLIDGFIA_00005 3555 4 Skin 0.17 protein_coding synonymous_variant LOW 84T>C Thr28Thr
M0042451 JLIDGFIA_00005 3615 5 Skin 0.22 protein_coding synonymous_variant LOW 24T>G Leu8Leu
M0042452 JLIDGFIA_00005 3730 5 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -92C>T None
M0042453 JLIDGFIA_00006 4889 6 Skin 0.26 protein_coding missense_variant MODERATE 1012G>T Ala338Ser
M0042454 JLIDGFIA_00006 4890 6 Skin 0.26 protein_coding missense_variant MODERATE 1013C>G Ala338Gly
M0042455 JLIDGFIA_00006 4891 6 Skin 0.26 protein_coding synonymous_variant LOW 1014G>T Ala338Ala
M0042456 JLIDGFIA_00006 4897 6 Skin 0.26 protein_coding synonymous_variant LOW 1020G>C Val340Val
M0042457 JLIDGFIA_00006 4918 5 Skin 0.22 protein_coding synonymous_variant LOW 1041C>G Val347Val
M0042458 JLIDGFIA_00006 4921 5 Skin 0.22 protein_coding synonymous_variant LOW 1044C>T Gly348Gly
M0042459 JLIDGFIA_00006 4924 5 Skin 0.22 protein_coding synonymous_variant LOW 1047T>C Phe349Phe
M0042460 JLIDGFIA_00006 4930 5 Skin 0.22 protein_coding synonymous_variant LOW 1053C>G Gly351Gly
M0042461 JLIDGFIA_00006 4931 5 Skin 0.22 protein_coding missense_variant MODERATE 1054A>T Ser352Cys
M0042462 JLIDGFIA_00006 4932 5 Skin 0.22 protein_coding missense_variant MODERATE 1055G>C Ser352Thr
M0042463 JLIDGFIA_00006 4933 5 Skin 0.22 protein_coding missense_variant MODERATE 1056C>G Ser352Arg
M0042464 JLIDGFIA_00006 4960 6 Skin 0.26 protein_coding synonymous_variant LOW 1083C>T Tyr361Tyr
M0042465 JLIDGFIA_00006 5017 6 Skin 0.26 protein_coding synonymous_variant LOW 1140A>G Ala380Ala
M0042466 JLIDGFIA_00006 5195 7 Skin 0.30 protein_coding missense_variant MODERATE 1318C>G Leu440Val
M0042467 JLIDGFIA_00005 5331 8 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -1693G>C None
M0042468 JLIDGFIA_00005 5350 9 Skin 0.39 protein_coding upstream_gene_variant MODIFIER -1712A>T None
M0042469 JLIDGFIA_00007 5471 6 Skin 0.26 protein_coding synonymous_variant LOW 105T>C Tyr35Tyr
M0042470 JLIDGFIA_00007 5477 6 Skin 0.26 protein_coding synonymous_variant LOW 111C>T Ala37Ala
M0042471 JLIDGFIA_00007 5519 7 Skin 0.30 protein_coding synonymous_variant LOW 153A>G Pro51Pro
M0042472 JLIDGFIA_00007 5624 5 Skin 0.22 protein_coding synonymous_variant LOW 258G>C Ala86Ala
M0042473 JLIDGFIA_00007 5646 10 Skin 0.43 protein_coding missense_variant MODERATE 280A>G Ile94Val
M0042474 JLIDGFIA_00007 5735 8 Skin 0.35 protein_coding synonymous_variant LOW 369G>C Ala123Ala
M0042475 JLIDGFIA_00007 5798 9 Skin 0.39 protein_coding synonymous_variant LOW 432T>C Thr144Thr
M0042476 JLIDGFIA_00007 5810 9 Skin 0.39 protein_coding synonymous_variant LOW 444C>T Asn148Asn
M0042477 JLIDGFIA_00007 5818 9 Skin 0.39 protein_coding missense_variant MODERATE 452C>T Ala151Val
M0042478 JLIDGFIA_00007 5819 9 Skin 0.39 protein_coding synonymous_variant LOW 453C>G Ala151Ala
M0042479 JLIDGFIA_00007 6031 9 Skin 0.39 protein_coding missense_variant MODERATE 665G>C Gly222Ala
M0042480 JLIDGFIA_00007 6050 6 Skin 0.26 protein_coding synonymous_variant LOW 684T>C Leu228Leu
M0042481 JLIDGFIA_00008 6085 5 Skin 0.22 protein_coding synonymous_variant LOW 24A>G Ala8Ala
M0042482 JLIDGFIA_00008 6091 4 Skin 0.17 protein_coding synonymous_variant LOW 30G>T Pro10Pro
M0042483 JLIDGFIA_00008 6229 10 Skin 0.43 protein_coding synonymous_variant LOW 168A>G Arg56Arg
M0042484 JLIDGFIA_00008 6427 10 Skin 0.43 protein_coding synonymous_variant LOW 366T>C Ala122Ala
M0042485 JLIDGFIA_00008 6619 11 Skin 0.48 protein_coding synonymous_variant LOW 558A>G Pro186Pro
M0042486 JLIDGFIA_00008 6625 7 Skin 0.30 protein_coding synonymous_variant LOW 564G>A Glu188Glu
M0042487 JLIDGFIA_00008 6643 11 Skin 0.48 protein_coding synonymous_variant LOW 582T>C Asp194Asp
M0042488 JLIDGFIA_00008 6661 11 Skin 0.48 protein_coding synonymous_variant LOW 600T>C Ile200Ile
M0042489 JLIDGFIA_00008 6731 11 Skin 0.48 protein_coding missense_variant MODERATE 670G>A Gly224Arg
M0042490 JLIDGFIA_00005 6781 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3143G>T None
M0042491 JLIDGFIA_00005 6798 6 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -3160C>T None
M0042492 JLIDGFIA_00005 6811 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3173G>C None
M0042493 JLIDGFIA_00005 6812 11 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -3174A>G None
M0042494 JLIDGFIA_00005 6814 11 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -3176T>C None
M0042495 JLIDGFIA_00005 6827 11 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -3189A>G None
M0042496 JLIDGFIA_00005 6839 11 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -3201T>G None
M0042497 JLIDGFIA_00005 6860 11 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -3222A>C None
M0042498 JLIDGFIA_00009 6920 9 Skin 0.39 protein_coding synonymous_variant LOW 45G>C Thr15Thr
M0042499 JLIDGFIA_00009 6988 9 Skin 0.39 protein_coding missense_variant MODERATE 113C>T Thr38Ile
M0042500 JLIDGFIA_00009 7081 5 Skin 0.22 protein_coding missense_variant MODERATE 206A>C Asp69Ala
M0042501 JLIDGFIA_00009 7376 11 Skin 0.48 protein_coding synonymous_variant LOW 501A>C Gly167Gly
M0042502 JLIDGFIA_00009 7419 11 Skin 0.48 protein_coding missense_variant MODERATE 544A>G Ser182Gly
M0042503 JLIDGFIA_00009 7761 11 Skin 0.48 protein_coding missense_variant MODERATE 886G>A Ala296Thr
M0042504 JLIDGFIA_00009 7793 9 Skin 0.39 protein_coding missense_variant MODERATE 918G>C Glu306Asp
M0042505 JLIDGFIA_00009 7814 3 Skin 0.13 protein_coding synonymous_variant LOW 939C>G Gly313Gly
M0042506 JLIDGFIA_00005 7942 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4304A>T None
M0042507 JLIDGFIA_00010 7978 12 Skin 0.52 protein_coding missense_variant MODERATE 22A>G Thr8Ala
M0042508 JLIDGFIA_00010 8116 12 Skin 0.52 protein_coding missense_variant MODERATE 160G>A Val54Ile
M0042509 JLIDGFIA_00010 8157 4 Skin 0.17 protein_coding synonymous_variant LOW 201A>G Ala67Ala
M0042510 JLIDGFIA_00010 8220 3 Skin 0.13 protein_coding synonymous_variant LOW 264C>T Ala88Ala
M0042511 JLIDGFIA_00010 8250 9 Skin 0.39 protein_coding synonymous_variant LOW 294C>T Thr98Thr
M0042512 JLIDGFIA_00010 8561 12 Skin 0.52 protein_coding missense_variant MODERATE 605T>C Leu202Pro
M0042513 JLIDGFIA_00011 8793 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -36C>T None
M0042514 JLIDGFIA_00011 8862 3 Skin 0.13 protein_coding missense_variant MODERATE 34C>G Leu12Val
M0042515 JLIDGFIA_00011 8866 12 Skin 0.52 protein_coding missense_variant MODERATE 38T>C Val13Ala
M0042516 JLIDGFIA_00011 8879 4 Skin 0.17 protein_coding synonymous_variant LOW 51G>A Gln17Gln
M0042517 JLIDGFIA_00011 8885 4 Skin 0.17 protein_coding synonymous_variant LOW 57C>G Leu19Leu
M0042518 JLIDGFIA_00011 8984 12 Skin 0.52 protein_coding synonymous_variant LOW 156G>C Arg52Arg
M0042519 JLIDGFIA_00011 9245 11 Skin 0.48 protein_coding synonymous_variant LOW 417A>G Val139Val
M0042520 JLIDGFIA_00012 9543 9 Skin 0.39 protein_coding synonymous_variant LOW 36G>C Val12Val
M0042521 JLIDGFIA_00012 9666 9 Skin 0.39 protein_coding synonymous_variant LOW 159A>G Pro53Pro
M0042522 JLIDGFIA_00005 5357 7 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -1719T>C None
M0042523 JLIDGFIA_00007 5538 6 Skin 0.26 protein_coding missense_variant MODERATE 172T>C Ser58Pro
M0042524 JLIDGFIA_00007 5552 5 Skin 0.22 protein_coding synonymous_variant LOW 186T>G Val62Val
M0042525 JLIDGFIA_00007 5582 3 Skin 0.13 protein_coding synonymous_variant LOW 216C>T Pro72Pro
M0042526 JLIDGFIA_00008 6187 3 Skin 0.13 protein_coding synonymous_variant LOW 126C>T Pro42Pro
M0042527 JLIDGFIA_00008 6418 4 Skin 0.17 protein_coding synonymous_variant LOW 357T>C Arg119Arg
M0042528 JLIDGFIA_00005 6862 7 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -3224C>T None
M0042529 JLIDGFIA_00009 6923 7 Skin 0.30 protein_coding synonymous_variant LOW 48T>C Pro16Pro
M0042530 JLIDGFIA_00009 7313 7 Skin 0.30 protein_coding synonymous_variant LOW 438T>C Arg146Arg
M0042531 JLIDGFIA_00009 7316 3 Skin 0.13 protein_coding synonymous_variant LOW 441C>T Ala147Ala
M0042532 JLIDGFIA_00009 7619 3 Skin 0.13 protein_coding synonymous_variant LOW 744C>A Leu248Leu
M0042533 JLIDGFIA_00003 1670 4 Skin 0.17 protein_coding synonymous_variant LOW 141T>C Gly47Gly
M0042534 JLIDGFIA_00003 1742 3 Skin 0.13 protein_coding synonymous_variant LOW 213A>G Glu71Glu
M0042535 JLIDGFIA_00003 1865 6 Skin 0.26 protein_coding synonymous_variant LOW 336T>G Leu112Leu
M0042536 JLIDGFIA_00004 2130 3 Skin 0.13 protein_coding missense_variant MODERATE 47C>A Thr16Lys
M0042537 JLIDGFIA_00004 2155 4 Skin 0.17 protein_coding synonymous_variant LOW 72C>A Thr24Thr
M0042538 JLIDGFIA_00004 2209 4 Skin 0.17 protein_coding synonymous_variant LOW 126G>A Ala42Ala
M0042539 JLIDGFIA_00004 2249 4 Skin 0.17 protein_coding missense_variant MODERATE 166G>A Ala56Thr
M0042540 JLIDGFIA_00004 2290 6 Skin 0.26 protein_coding synonymous_variant LOW 207A>G Leu69Leu
M0042541 JLIDGFIA_00004 2335 6 Skin 0.26 protein_coding synonymous_variant LOW 252T>C Phe84Phe
M0042542 JLIDGFIA_00004 2431 5 Skin 0.22 protein_coding synonymous_variant LOW 348C>G Pro116Pro
M0042543 JLIDGFIA_00006 2668 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -1210G>A None
M0042544 JLIDGFIA_00005 2787 3 Skin 0.13 protein_coding synonymous_variant LOW 852C>T Asp284Asp
M0042545 JLIDGFIA_00005 2841 3 Skin 0.13 protein_coding synonymous_variant LOW 798C>G Ser266Ser
M0042546 JLIDGFIA_00005 3249 3 Skin 0.13 protein_coding synonymous_variant LOW 390C>G Ala130Ala
M0042547 JLIDGFIA_00005 3256 3 Skin 0.13 protein_coding missense_variant MODERATE 383C>T Pro128Leu
M0042548 JLIDGFIA_00005 3348 3 Skin 0.13 protein_coding synonymous_variant LOW 291C>T Ser97Ser
M0042549 JLIDGFIA_00005 3438 3 Skin 0.13 protein_coding synonymous_variant LOW 201C>T Ala67Ala
M0042550 JLIDGFIA_00005 3510 3 Skin 0.13 protein_coding synonymous_variant LOW 129G>C Leu43Leu
M0042551 JLIDGFIA_00005 3600 3 Skin 0.13 protein_coding synonymous_variant LOW 39C>G Val13Val
M0042552 JLIDGFIA_00005 3628 3 Skin 0.13 protein_coding missense_variant MODERATE 11T>A Leu4Gln
M0042553 JLIDGFIA_00005 3642 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4C>T None
M0042554 JLIDGFIA_00005 3669 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -31T>C None
M0042555 JLIDGFIA_00005 3857 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -219C>T None
M0042556 JLIDGFIA_00006 4378 4 Skin 0.17 protein_coding synonymous_variant LOW 501C>G Leu167Leu
M0042557 JLIDGFIA_00006 4524 4 Skin 0.17 protein_coding missense_variant MODERATE 647A>G Lys216Arg
M0042558 JLIDGFIA_00006 4534 4 Skin 0.17 protein_coding synonymous_variant LOW 657G>A Leu219Leu
M0042559 JLIDGFIA_00007 5435 4 Skin 0.17 protein_coding synonymous_variant LOW 69C>T Phe23Phe
M0042560 JLIDGFIA_00007 5759 3 Skin 0.13 protein_coding synonymous_variant LOW 393C>G Ala131Ala
M0042561 JLIDGFIA_00007 5813 3 Skin 0.13 protein_coding synonymous_variant LOW 447C>T Phe149Phe
M0042562 JLIDGFIA_00007 5838 6 Skin 0.26 protein_coding missense_variant MODERATE 472G>A Ala158Thr
M0042563 JLIDGFIA_00007 5891 3 Skin 0.13 protein_coding synonymous_variant LOW 525C>T Val175Val
M0042564 JLIDGFIA_00007 5897 3 Skin 0.13 protein_coding synonymous_variant LOW 531G>C Ser177Ser
M0042565 JLIDGFIA_00007 6035 3 Skin 0.13 protein_coding synonymous_variant LOW 669G>A Pro223Pro
M0042566 JLIDGFIA_00007 6039 5 Skin 0.22 protein_coding missense_variant MODERATE 673G>C Asp225His
M0042567 JLIDGFIA_00007 6047 5 Skin 0.22 protein_coding synonymous_variant LOW 681C>G Thr227Thr
M0042568 JLIDGFIA_00007 6055 5 Skin 0.22 protein_coding missense_variant MODERATE 689C>T Ala230Val
M0042569 JLIDGFIA_00008 6074 3 Skin 0.13 protein_coding missense_variant MODERATE 13G>A Glu5Lys
M0042570 JLIDGFIA_00008 6499 3 Skin 0.13 protein_coding synonymous_variant LOW 438T>C Phe146Phe
M0042571 JLIDGFIA_00009 7448 3 Skin 0.13 protein_coding synonymous_variant LOW 573C>T Gly191Gly
M0042572 JLIDGFIA_00009 7460 3 Skin 0.13 protein_coding synonymous_variant LOW 585C>G Gly195Gly
M0042573 JLIDGFIA_00009 7655 3 Skin 0.13 protein_coding synonymous_variant LOW 780G>C Leu260Leu
M0042574 JLIDGFIA_00009 7697 3 Skin 0.13 protein_coding synonymous_variant LOW 822C>T Pro274Pro
M0042575 JLIDGFIA_00009 7766 5 Skin 0.22 protein_coding synonymous_variant LOW 891A>G Gln297Gln
M0042576 JLIDGFIA_00005 7845 3 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4207G>T None
M0042577 JLIDGFIA_00010 8178 7 Skin 0.30 protein_coding synonymous_variant LOW 222C>T Ile74Ile
M0042578 JLIDGFIA_00011 9038 9 Skin 0.39 protein_coding synonymous_variant LOW 210A>G Ala70Ala
M0042579 JLIDGFIA_00011 9077 6 Skin 0.26 protein_coding synonymous_variant LOW 249C>T Ser83Ser
M0042580 JLIDGFIA_00011 9167 9 Skin 0.39 protein_coding synonymous_variant LOW 339C>G Ala113Ala
M0042581 JLIDGFIA_00011 9182 9 Skin 0.39 protein_coding synonymous_variant LOW 354C>G Pro118Pro
M0042582 JLIDGFIA_00011 9188 9 Skin 0.39 protein_coding synonymous_variant LOW 360C>G Thr120Thr
M0042583 JLIDGFIA_00011 9221 6 Skin 0.26 protein_coding synonymous_variant LOW 393G>C Thr131Thr
M0042584 JLIDGFIA_00011 9356 6 Skin 0.26 protein_coding synonymous_variant LOW 528T>C Tyr176Tyr
M0042585 JLIDGFIA_00011 9359 6 Skin 0.26 protein_coding synonymous_variant LOW 531C>G Gly177Gly
M0042586 JLIDGFIA_00012 9534 4 Skin 0.17 protein_coding synonymous_variant LOW 27C>T Ala9Ala
M0042587 JLIDGFIA_00012 9828 10 Skin 0.43 protein_coding synonymous_variant LOW 321G>C Val107Val
M0042588 JLIDGFIA_00012 9836 6 Skin 0.26 protein_coding missense_variant MODERATE 329G>C Gly110Ala
M0042589 JLIDGFIA_00012 9888 11 Skin 0.48 protein_coding synonymous_variant LOW 381C>G Leu127Leu
M0042590 JLIDGFIA_00012 9908 9 Skin 0.39 protein_coding missense_variant MODERATE 401T>C Val134Ala
M0042591 JLIDGFIA_00012 9939 10 Skin 0.43 protein_coding synonymous_variant LOW 432G>C Val144Val
M0042592 JLIDGFIA_00012 10074 3 Skin 0.13 protein_coding synonymous_variant LOW 567G>A Leu189Leu
M0042593 JLIDGFIA_00013 10180 4 Skin 0.17 protein_coding synonymous_variant LOW 27G>A Lys9Lys
M0042594 JLIDGFIA_00013 10217 6 Skin 0.26 protein_coding synonymous_variant LOW 64T>C Leu22Leu
M0042595 JLIDGFIA_00013 10327 4 Skin 0.17 protein_coding synonymous_variant LOW 174T>C Ile58Ile
M0042596 JLIDGFIA_00013 10624 6 Skin 0.26 protein_coding synonymous_variant LOW 471T>C Tyr157Tyr
M0042597 JLIDGFIA_00013 10711 8 Skin 0.35 protein_coding synonymous_variant LOW 558T>C Gly186Gly
M0042598 JLIDGFIA_00013 10798 7 Skin 0.30 protein_coding synonymous_variant LOW 645A>C Ala215Ala
M0042599 JLIDGFIA_00014 10878 3 Skin 0.13 protein_coding start_lost HIGH 1A>G Met1?
M0042600 JLIDGFIA_00014 10935 7 Skin 0.30 protein_coding missense_variant MODERATE 58A>G Thr20Ala
M0042601 JLIDGFIA_00014 11069 5 Skin 0.22 protein_coding synonymous_variant LOW 192C>G Ala64Ala
M0042602 JLIDGFIA_00014 11156 3 Skin 0.13 protein_coding synonymous_variant LOW 279A>C Ala93Ala
M0042603 JLIDGFIA_00014 11266 7 Skin 0.30 protein_coding missense_variant MODERATE 389C>G Ala130Gly
M0042604 JLIDGFIA_00014 11327 4 Skin 0.17 protein_coding synonymous_variant LOW 450A>C Ala150Ala
M0042605 JLIDGFIA_00014 11472 6 Skin 0.26 protein_coding missense_variant MODERATE 595A>C Lys199Gln
M0042606 JLIDGFIA_00014 11486 5 Skin 0.22 protein_coding synonymous_variant LOW 609T>C Leu203Leu
M0042607 JLIDGFIA_00008 6535 3 Skin 0.13 protein_coding synonymous_variant LOW 474C>T Tyr158Tyr
M0042608 JLIDGFIA_00014 10994 7 Skin 0.30 protein_coding synonymous_variant LOW 117A>C Ala39Ala
M0042609 JLIDGFIA_00004 2485 3 Skin 0.13 protein_coding synonymous_variant LOW 402G>A Lys134Lys
M0042610 JLIDGFIA_00006 4450 3 Skin 0.13 protein_coding synonymous_variant LOW 573C>T Asp191Asp
M0042611 JLIDGFIA_00006 4765 3 Skin 0.13 protein_coding synonymous_variant LOW 888G>C Arg296Arg
M0042612 JLIDGFIA_00012 9843 4 Skin 0.17 protein_coding synonymous_variant LOW 336G>A Glu112Glu
M0042613 JLIDGFIA_00012 10089 4 Skin 0.17 protein_coding synonymous_variant LOW 582G>C Ala194Ala
M0042614 JLIDGFIA_00013 10342 3 Skin 0.13 protein_coding synonymous_variant LOW 189C>T Thr63Thr
M0042615 JLIDGFIA_00014 11750 5 Skin 0.22 protein_coding synonymous_variant LOW 873A>C Gly291Gly
M0042616 JLIDGFIA_00014 11833 5 Skin 0.22 protein_coding missense_variant MODERATE 956T>C Leu319Pro
M0042617 JLIDGFIA_00015 12273 3 Skin 0.13 protein_coding synonymous_variant LOW 159T>C Phe53Phe
M0042618 JLIDGFIA_00015 12333 3 Skin 0.13 protein_coding synonymous_variant LOW 219C>T Asp73Asp
M0042619 JLIDGFIA_00015 12363 3 Skin 0.13 protein_coding synonymous_variant LOW 249G>C Thr83Thr
M0042620 JLIDGFIA_00015 12505 3 Skin 0.13 protein_coding missense_variant MODERATE 391A>C Lys131Gln
M0042621 JLIDGFIA_00014 11735 3 Skin 0.13 protein_coding synonymous_variant LOW 858C>G Thr286Thr
M0042622 JLIDGFIA_00014 11798 3 Skin 0.13 protein_coding synonymous_variant LOW 921T>C Gly307Gly
M0042623 JLIDGFIA_00014 11813 3 Skin 0.13 protein_coding synonymous_variant LOW 936T>G Leu312Leu
M0042624 JLIDGFIA_00014 11843 3 Skin 0.13 protein_coding synonymous_variant LOW 966G>C Ala322Ala
M0042625 JLIDGFIA_00014 11846 3 Skin 0.13 protein_coding synonymous_variant LOW 969G>C Arg323Arg
M0042626 JLIDGFIA_00014 11850 3 Skin 0.13 protein_coding missense_variant MODERATE 973A>C Lys325Gln
M0042627 JLIDGFIA_00014 11851 3 Skin 0.13 protein_coding missense_variant MODERATE 974A>G Lys325Arg
M0042628 JLIDGFIA_00014 11876 3 Skin 0.13 protein_coding synonymous_variant LOW 999C>G Ala333Ala
M0042629 JLIDGFIA_00014 11879 3 Skin 0.13 protein_coding synonymous_variant LOW 1002T>C Phe334Phe
M0042630 JLIDGFIA_00014 11885 3 Skin 0.13 protein_coding synonymous_variant LOW 1008A>G Pro336Pro
M0042631 JLIDGFIA_00014 11889 3 Skin 0.13 protein_coding synonymous_variant LOW 1012T>C Leu338Leu
M0042632 JLIDGFIA_00014 11892 3 Skin 0.13 protein_coding missense_variant MODERATE 1015C>A Gln339Lys
M0042633 JLIDGFIA_00014 11893 3 Skin 0.13 protein_coding missense_variant MODERATE 1016A>G Gln339Arg
M0042634 JLIDGFIA_00014 11906 3 Skin 0.13 protein_coding synonymous_variant LOW 1029G>C Gly343Gly
M0042635 JLIDGFIA_00009 7038 4 Skin 0.17 protein_coding synonymous_variant LOW 163T>C Leu55Leu
M0042636 JLIDGFIA_00009 7065 3 Skin 0.13 protein_coding missense_variant MODERATE 190G>T Val64Leu
M0042637 JLIDGFIA_00009 7080 3 Skin 0.13 protein_coding missense_variant MODERATE 205G>A Asp69Asn
M0042638 JLIDGFIA_00007 5652 3 Skin 0.13 protein_coding missense_variant MODERATE 286G>C Ala96Pro
M0042639 JLIDGFIA_00007 5654 3 Skin 0.13 protein_coding synonymous_variant LOW 288C>T Ala96Ala
M0042640 JLIDGFIA_00007 5656 3 Skin 0.13 protein_coding missense_variant MODERATE 290A>C Glu97Ala
M0042641 JLIDGFIA_00014 11093 4 Skin 0.17 protein_coding synonymous_variant LOW 216G>C Leu72Leu
M0042642 JLIDGFIA_00014 11210 3 Skin 0.13 protein_coding synonymous_variant LOW 333G>A Leu111Leu
M0042643 JLIDGFIA_00011 9275 3 Skin 0.13 protein_coding synonymous_variant LOW 447C>T Phe149Phe






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
JLIDGFIA_00015 PHI:10246 prpA 75.5 5.8e-151 1 330 0.9910 0.9910 rodents brucellosis 4-hydroxyproline epimerase reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
JLIDGFIA_00013 3.A.1.3.21 73.7 1.5e-95 1 236 0.9833 0.9833 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily