Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2518
  Reference Plasmid   1111525849772152_bin.2__k141_39511
  Reference Plasmid Size   8940
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0042764 HENNFBGC_00004 5816 5 Skin 0.09 protein_coding missense_variant MODERATE 277T>G Phe93Val
M0042765 HENNFBGC_00004 5925 48 Skin 0.89 protein_coding synonymous_variant LOW 168T>C Ile56Ile
M0042766 HENNFBGC_00006 7381 42 Skin 0.78 protein_coding synonymous_variant LOW 705A>T Thr235Thr
M0042767 HENNFBGC_00006 7447 5 Skin 0.09 protein_coding synonymous_variant LOW 771T>C Tyr257Tyr
M0042768 HENNFBGC_00006 7638 35 Skin 0.65 protein_coding missense_variant MODERATE 962C>G Ser321Cys
M0042769 HENNFBGC_00006 7834 27 Skin 0.50 protein_coding missense_variant MODERATE 1158T>A Phe386Leu
M0042770 HENNFBGC_00002 7874 30 Skin 0.56 protein_coding upstream_gene_variant MODIFIER -4288A>G None
M0042771 HENNFBGC_00002 7982 14 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -4396G>A None
M0042772 HENNFBGC_00002 8358 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4772T>C None
M0042773 HENNFBGC_00003 4503 10 Skin 0.19 protein_coding synonymous_variant LOW 411G>A Leu137Leu
M0042774 HENNFBGC_00003 4505 10 Skin 0.19 protein_coding synonymous_variant LOW 409C>T Leu137Leu
M0042775 HENNFBGC_00003 4547 10 Skin 0.19 protein_coding synonymous_variant LOW 367C>T Leu123Leu
M0042776 HENNFBGC_00003 4575 13 Skin 0.24 protein_coding synonymous_variant LOW 339A>T Val113Val
M0042777 HENNFBGC_00003 4621 9 Skin 0.17 protein_coding missense_variant MODERATE 293A>G Lys98Arg
M0042778 HENNFBGC_00002 4941 33 Skin 0.61 protein_coding upstream_gene_variant MODIFIER -1355T>C None
M0042779 HENNFBGC_00002 5082 33 Skin 0.61 protein_coding upstream_gene_variant MODIFIER -1496C>T None
M0042780 HENNFBGC_00002 5085 31 Skin 0.57 protein_coding upstream_gene_variant MODIFIER -1499T>C None
M0042781 HENNFBGC_00002 5109 32 Skin 0.59 protein_coding upstream_gene_variant MODIFIER -1523T>C None
M0042782 HENNFBGC_00004 5620 33 Skin 0.61 protein_coding missense_variant MODERATE 473G>A Ser158Asn
M0042783 HENNFBGC_00004 5656 31 Skin 0.57 protein_coding missense_variant MODERATE 437G>C Arg146Thr
M0042784 HENNFBGC_00004 5693 45 Skin 0.83 protein_coding missense_variant MODERATE 400A>C Ser134Arg
M0042785 HENNFBGC_00004 5694 31 Skin 0.57 protein_coding missense_variant MODERATE 399A>T Leu133Phe
M0042786 HENNFBGC_00004 5696 33 Skin 0.61 protein_coding missense_variant MODERATE 397T>A Leu133Ile
M0042787 HENNFBGC_00004 5712 4 Skin 0.07 protein_coding synonymous_variant LOW 381T>C Asn127Asn
M0042788 HENNFBGC_00005 6671 20 Skin 0.37 protein_coding synonymous_variant LOW 435A>G Glu145Glu
M0042789 HENNFBGC_00006 7010 35 Skin 0.65 protein_coding missense_variant MODERATE 334A>C Met112Leu
M0042790 HENNFBGC_00002 7997 12 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4411C>T None
M0042791 HENNFBGC_00002 8029 12 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4443G>T None
M0042792 HENNFBGC_00002 6151 18 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2565A>T None
M0042793 HENNFBGC_00006 7291 10 Skin 0.19 protein_coding synonymous_variant LOW 615A>G Arg205Arg
M0042794 HENNFBGC_00006 7346 4 Skin 0.07 protein_coding synonymous_variant LOW 670C>T Leu224Leu
M0042795 HENNFBGC_00006 7372 15 Skin 0.28 protein_coding synonymous_variant LOW 696A>T Ala232Ala
M0042796 HENNFBGC_00006 7764 5 Skin 0.09 protein_coding missense_variant MODERATE 1088T>C Met363Thr
M0042797 HENNFBGC_00004 5703 4 Skin 0.07 protein_coding synonymous_variant LOW 390T>G Gly130Gly
M0042798 HENNFBGC_00004 5706 6 Skin 0.11 protein_coding synonymous_variant LOW 387A>G Lys129Lys
M0042799 HENNFBGC_00004 5709 7 Skin 0.13 protein_coding synonymous_variant LOW 384A>G Lys128Lys
M0042800 HENNFBGC_00004 5727 7 Skin 0.13 protein_coding synonymous_variant LOW 366T>C Asp122Asp
M0042801 HENNFBGC_00004 5739 7 Skin 0.13 protein_coding synonymous_variant LOW 354A>T Ile118Ile
M0042802 HENNFBGC_00004 5742 7 Skin 0.13 protein_coding synonymous_variant LOW 351G>A Val117Val
M0042803 HENNFBGC_00004 5770 3 Skin 0.06 protein_coding missense_variant MODERATE 323G>A Ser108Asn
M0042804 HENNFBGC_00004 5771 3 Skin 0.06 protein_coding missense_variant MODERATE 322A>G Ser108Gly
M0042805 HENNFBGC_00004 5773 3 Skin 0.06 protein_coding missense_variant MODERATE 320A>G Lys107Arg
M0042806 HENNFBGC_00004 5778 7 Skin 0.13 protein_coding synonymous_variant LOW 315G>A Gln105Gln
M0042807 HENNFBGC_00004 5783 17 Skin 0.31 protein_coding missense_variant MODERATE 310A>G Asn104Asp
M0042808 HENNFBGC_00004 5817 14 Skin 0.26 protein_coding synonymous_variant LOW 276G>C Gly92Gly
M0042809 HENNFBGC_00004 5885 14 Skin 0.26 protein_coding missense_variant MODERATE 208A>G Ile70Val
M0042810 HENNFBGC_00004 5890 22 Skin 0.41 protein_coding missense_variant MODERATE 203G>A Ser68Asn
M0042811 HENNFBGC_00004 6012 14 Skin 0.26 protein_coding synonymous_variant LOW 81C>T Pro27Pro
M0042812 HENNFBGC_00004 6079 20 Skin 0.37 protein_coding missense_variant MODERATE 14G>T Arg5Ile
M0042813 HENNFBGC_00002 6146 7 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -2560C>T None
M0042814 HENNFBGC_00002 6206 24 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -2620T>C None
M0042815 HENNFBGC_00002 6213 24 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -2627G>A None
M0042816 HENNFBGC_00002 6215 20 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -2629T>C None
M0042817 HENNFBGC_00002 6228 12 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -2642T>C None
M0042818 HENNFBGC_00005 6243 12 Skin 0.22 protein_coding missense_variant MODERATE 7G>A Asp3Asn
M0042819 HENNFBGC_00005 6341 10 Skin 0.19 protein_coding synonymous_variant LOW 105T>C Thr35Thr
M0042820 HENNFBGC_00005 6368 5 Skin 0.09 protein_coding synonymous_variant LOW 132T>C Ile44Ile
M0042821 HENNFBGC_00005 6389 17 Skin 0.31 protein_coding synonymous_variant LOW 153C>A Thr51Thr
M0042822 HENNFBGC_00005 6440 9 Skin 0.17 protein_coding synonymous_variant LOW 204G>A Lys68Lys
M0042823 HENNFBGC_00005 6452 13 Skin 0.24 protein_coding synonymous_variant LOW 216G>A Val72Val
M0042824 HENNFBGC_00005 6473 13 Skin 0.24 protein_coding synonymous_variant LOW 237C>T Val79Val
M0042825 HENNFBGC_00005 6512 21 Skin 0.39 protein_coding synonymous_variant LOW 276G>A Leu92Leu
M0042826 HENNFBGC_00005 6530 5 Skin 0.09 protein_coding synonymous_variant LOW 294C>T Gly98Gly
M0042827 HENNFBGC_00005 6535 10 Skin 0.19 protein_coding missense_variant MODERATE 299G>T Arg100Ile
M0042828 HENNFBGC_00005 6536 18 Skin 0.33 protein_coding missense_variant MODERATE 300A>C Arg100Ser
M0042829 HENNFBGC_00005 6539 18 Skin 0.33 protein_coding synonymous_variant LOW 303T>C Leu101Leu
M0042830 HENNFBGC_00005 6561 18 Skin 0.33 protein_coding missense_variant MODERATE 325A>G Ile109Val
M0042831 HENNFBGC_00006 7579 11 Skin 0.20 protein_coding synonymous_variant LOW 903A>T Gly301Gly
M0042832 HENNFBGC_00002 7898 13 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -4312T>C None
M0042833 HENNFBGC_00002 7917 13 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -4331A>G None
M0042834 HENNFBGC_00002 8113 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4527A>G None
M0042835 HENNFBGC_00002 8127 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4541G>C None
M0042836 HENNFBGC_00004 5766 10 Skin 0.19 protein_coding synonymous_variant LOW 327T>C Thr109Thr
M0042837 HENNFBGC_00004 5768 7 Skin 0.13 protein_coding missense_variant MODERATE 325A>T Thr109Ser
M0042838 HENNFBGC_00004 5802 11 Skin 0.20 protein_coding synonymous_variant LOW 291T>C Cys97Cys
M0042839 HENNFBGC_00004 6041 5 Skin 0.09 protein_coding missense_variant MODERATE 52T>A Leu18Ile
M0042840 HENNFBGC_00003 3781 5 Skin 0.09 protein_coding missense_variant MODERATE 1133A>G Glu378Gly
M0042841 HENNFBGC_00003 4192 14 Skin 0.26 protein_coding missense_variant MODERATE 722C>T Thr241Met
M0042842 HENNFBGC_00003 4292 10 Skin 0.19 protein_coding synonymous_variant LOW 622C>A Arg208Arg
M0042843 HENNFBGC_00003 4314 4 Skin 0.07 protein_coding synonymous_variant LOW 600G>A Gly200Gly
M0042844 HENNFBGC_00003 4343 8 Skin 0.15 protein_coding missense_variant MODERATE 571A>G Ile191Val
M0042845 HENNFBGC_00003 4581 3 Skin 0.06 protein_coding synonymous_variant LOW 333C>T Val111Val
M0042846 HENNFBGC_00003 4719 11 Skin 0.20 protein_coding synonymous_variant LOW 195T>C Leu65Leu
M0042847 HENNFBGC_00004 6087 3 Skin 0.06 protein_coding missense_variant MODERATE 6G>T Trp2Cys
M0042848 HENNFBGC_00002 6202 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2616T>C None
M0042849 HENNFBGC_00002 5044 7 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -1458T>G None
M0042850 HENNFBGC_00004 5462 10 Skin 0.19 protein_coding missense_variant MODERATE 631C>T Leu211Phe
M0042851 HENNFBGC_00006 7811 15 Skin 0.28 protein_coding missense_variant MODERATE 1135G>A Ala379Thr
M0042852 HENNFBGC_00002 8035 7 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4449G>A None
M0042853 HENNFBGC_00002 5190 6 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1604A>T None
M0042854 HENNFBGC_00002 5196 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1610G>A None
M0042855 HENNFBGC_00002 5199 12 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -1613A>T None
M0042856 HENNFBGC_00002 5220 17 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -1634G>A None
M0042857 HENNFBGC_00002 5239 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1653G>A None
M0042858 HENNFBGC_00002 5256 6 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1670G>A None
M0042859 HENNFBGC_00002 5257 6 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1671C>T None
M0042860 HENNFBGC_00002 5277 5 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1691G>A None
M0042861 HENNFBGC_00002 5279 6 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1693C>G None
M0042862 HENNFBGC_00004 5321 8 Skin 0.15 protein_coding missense_variant MODERATE 772C>T Pro258Ser
M0042863 HENNFBGC_00004 5322 7 Skin 0.13 protein_coding synonymous_variant LOW 771A>T Pro257Pro
M0042864 HENNFBGC_00004 5343 7 Skin 0.13 protein_coding synonymous_variant LOW 750T>C Gly250Gly
M0042865 HENNFBGC_00004 5387 7 Skin 0.13 protein_coding missense_variant MODERATE 706A>G Thr236Ala
M0042866 HENNFBGC_00004 5397 7 Skin 0.13 protein_coding synonymous_variant LOW 696A>G Thr232Thr
M0042867 HENNFBGC_00004 5498 16 Skin 0.30 protein_coding missense_variant MODERATE 595C>A Leu199Met
M0042868 HENNFBGC_00004 5520 5 Skin 0.09 protein_coding synonymous_variant LOW 573T>C Ser191Ser
M0042869 HENNFBGC_00004 5544 13 Skin 0.24 protein_coding synonymous_variant LOW 549C>T Ser183Ser
M0042870 HENNFBGC_00004 5570 17 Skin 0.31 protein_coding missense_variant MODERATE 523A>G Lys175Glu
M0042871 HENNFBGC_00004 5603 11 Skin 0.20 protein_coding missense_variant MODERATE 490T>G Ser164Ala
M0042872 HENNFBGC_00004 6090 3 Skin 0.06 protein_coding start_lost HIGH 3G>A Met1?
M0042873 HENNFBGC_00002 6156 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2570G>C None
M0042874 HENNFBGC_00002 6157 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -2571G>A None
M0042875 HENNFBGC_00006 6898 7 Skin 0.13 protein_coding synonymous_variant LOW 222C>A Val74Val
M0042876 HENNFBGC_00002 3506 3 Skin 0.06 protein_coding synonymous_variant LOW 81C>T Gly27Gly
M0042877 HENNFBGC_00002 3587 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -1A>C None
M0042878 HENNFBGC_00003 3699 8 Skin 0.15 protein_coding synonymous_variant LOW 1215T>C Ala405Ala
M0042879 HENNFBGC_00003 3743 4 Skin 0.07 protein_coding synonymous_variant LOW 1171C>T Leu391Leu
M0042880 HENNFBGC_00003 3813 4 Skin 0.07 protein_coding synonymous_variant LOW 1101T>A Ala367Ala
M0042881 HENNFBGC_00003 3821 4 Skin 0.07 protein_coding synonymous_variant LOW 1093T>C Leu365Leu
M0042882 HENNFBGC_00003 3894 4 Skin 0.07 protein_coding synonymous_variant LOW 1020T>A Arg340Arg
M0042883 HENNFBGC_00003 3960 5 Skin 0.09 protein_coding synonymous_variant LOW 954C>A Ser318Ser
M0042884 HENNFBGC_00003 3966 5 Skin 0.09 protein_coding synonymous_variant LOW 948C>T Gly316Gly
M0042885 HENNFBGC_00003 3981 9 Skin 0.17 protein_coding synonymous_variant LOW 933T>G Ser311Ser
M0042886 HENNFBGC_00003 4011 4 Skin 0.07 protein_coding synonymous_variant LOW 903A>T Gly301Gly
M0042887 HENNFBGC_00003 4038 3 Skin 0.06 protein_coding missense_variant MODERATE 876C>A Ser292Arg
M0042888 HENNFBGC_00003 4062 4 Skin 0.07 protein_coding synonymous_variant LOW 852G>T Ser284Ser
M0042889 HENNFBGC_00003 4083 4 Skin 0.07 protein_coding synonymous_variant LOW 831G>A Lys277Lys
M0042890 HENNFBGC_00003 4095 4 Skin 0.07 protein_coding missense_variant MODERATE 819T>A Asp273Glu
M0042891 HENNFBGC_00003 4116 5 Skin 0.09 protein_coding synonymous_variant LOW 798T>C Leu266Leu
M0042892 HENNFBGC_00003 4179 11 Skin 0.20 protein_coding synonymous_variant LOW 735T>C Asp245Asp
M0042893 HENNFBGC_00003 4209 9 Skin 0.17 protein_coding synonymous_variant LOW 705T>C Pro235Pro
M0042894 HENNFBGC_00003 4389 7 Skin 0.13 protein_coding synonymous_variant LOW 525G>T Leu175Leu
M0042895 HENNFBGC_00003 4392 7 Skin 0.13 protein_coding synonymous_variant LOW 522A>G Ala174Ala
M0042896 HENNFBGC_00003 4455 9 Skin 0.17 protein_coding synonymous_variant LOW 459C>T Asp153Asp
M0042897 HENNFBGC_00003 4794 10 Skin 0.19 protein_coding synonymous_variant LOW 120A>G Ser40Ser
M0042898 HENNFBGC_00002 5035 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -1449T>C None
M0042899 HENNFBGC_00002 5298 11 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -1712G>T None
M0042900 HENNFBGC_00004 5361 3 Skin 0.06 protein_coding synonymous_variant LOW 732T>C Tyr244Tyr
M0042901 HENNFBGC_00004 5367 3 Skin 0.06 protein_coding synonymous_variant LOW 726A>T Ala242Ala
M0042902 HENNFBGC_00004 5409 4 Skin 0.07 protein_coding synonymous_variant LOW 684A>C Ser228Ser
M0042903 HENNFBGC_00004 5436 4 Skin 0.07 protein_coding synonymous_variant LOW 657C>T Ile219Ile
M0042904 HENNFBGC_00004 5444 4 Skin 0.07 protein_coding missense_variant MODERATE 649G>A Glu217Lys
M0042905 HENNFBGC_00004 5478 4 Skin 0.07 protein_coding synonymous_variant LOW 615G>A Thr205Thr
M0042906 HENNFBGC_00004 5574 7 Skin 0.13 protein_coding synonymous_variant LOW 519G>A Ser173Ser
M0042907 HENNFBGC_00004 5575 10 Skin 0.19 protein_coding stop_gained HIGH 518C>A Ser173*
M0042908 HENNFBGC_00004 5576 6 Skin 0.11 protein_coding missense_variant MODERATE 517T>G Ser173Ala
M0042909 HENNFBGC_00004 5617 4 Skin 0.07 protein_coding missense_variant MODERATE 476A>G Lys159Arg
M0042910 HENNFBGC_00006 6696 4 Skin 0.07 protein_coding missense_variant MODERATE 20T>C Ile7Thr
M0042911 HENNFBGC_00006 6709 3 Skin 0.06 protein_coding synonymous_variant LOW 33C>T Ile11Ile
M0042912 HENNFBGC_00006 7036 7 Skin 0.13 protein_coding synonymous_variant LOW 360T>C Ala120Ala
M0042913 HENNFBGC_00006 7537 3 Skin 0.06 protein_coding synonymous_variant LOW 861T>C Phe287Phe
M0042914 HENNFBGC_00002 7883 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4297T>A None
M0042915 HENNFBGC_00006 7193 5 Skin 0.09 protein_coding missense_variant MODERATE 517A>T Thr173Ser
M0042916 HENNFBGC_00006 7390 6 Skin 0.11 protein_coding synonymous_variant LOW 714G>A Gln238Gln
M0042917 HENNFBGC_00002 935 3 Skin 0.06 protein_coding synonymous_variant LOW 2652T>A Ala884Ala
M0042918 HENNFBGC_00002 977 3 Skin 0.06 protein_coding synonymous_variant LOW 2610C>T Gly870Gly
M0042919 HENNFBGC_00002 1013 3 Skin 0.06 protein_coding synonymous_variant LOW 2574C>T Asp858Asp
M0042920 HENNFBGC_00002 1031 3 Skin 0.06 protein_coding synonymous_variant LOW 2556T>C Val852Val
M0042921 HENNFBGC_00002 1253 3 Skin 0.06 protein_coding synonymous_variant LOW 2334A>T Ile778Ile
M0042922 HENNFBGC_00002 1607 4 Skin 0.07 protein_coding synonymous_variant LOW 1980T>C Asp660Asp
M0042923 HENNFBGC_00002 1948 5 Skin 0.09 protein_coding synonymous_variant LOW 1639A>C Arg547Arg
M0042924 HENNFBGC_00002 2219 4 Skin 0.07 protein_coding synonymous_variant LOW 1368T>G Gly456Gly
M0042925 HENNFBGC_00002 2423 3 Skin 0.06 protein_coding synonymous_variant LOW 1164T>C Asn388Asn
M0042926 HENNFBGC_00002 2740 4 Skin 0.07 protein_coding missense_variant MODERATE 847A>G Lys283Glu
M0042927 HENNFBGC_00002 2826 10 Skin 0.19 protein_coding missense_variant MODERATE 761C>T Ala254Val
M0042928 HENNFBGC_00002 3407 3 Skin 0.06 protein_coding synonymous_variant LOW 180A>G Ser60Ser
M0042929 HENNFBGC_00002 3657 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -71A>T None
M0042930 HENNFBGC_00006 6896 3 Skin 0.06 protein_coding missense_variant MODERATE 220G>A Val74Ile
M0042931 HENNFBGC_00003 4675 3 Skin 0.06 protein_coding missense_variant MODERATE 239A>T Tyr80Phe
M0042932 HENNFBGC_00003 4779 3 Skin 0.06 protein_coding synonymous_variant LOW 135C>T Val45Val
M0042933 HENNFBGC_00002 5133 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -1547G>C None
M0042934 HENNFBGC_00004 5449 3 Skin 0.06 protein_coding missense_variant MODERATE 644C>A Thr215Asn
M0042935 HENNFBGC_00004 5483 3 Skin 0.06 protein_coding missense_variant MODERATE 610G>A Glu204Lys
M0042936 HENNFBGC_00004 5559 4 Skin 0.07 protein_coding synonymous_variant LOW 534G>A Glu178Glu
M0042937 HENNFBGC_00004 5652 5 Skin 0.09 protein_coding synonymous_variant LOW 441C>T Val147Val
M0042938 HENNFBGC_00004 5763 5 Skin 0.09 protein_coding missense_variant MODERATE 330A>T Leu110Phe
M0042939 HENNFBGC_00004 5984 3 Skin 0.06 protein_coding stop_gained HIGH 109G>T Gly37*
M0042940 HENNFBGC_00005 6475 5 Skin 0.09 protein_coding missense_variant MODERATE 239T>A Met80Lys
M0042941 HENNFBGC_00005 6569 4 Skin 0.07 protein_coding synonymous_variant LOW 333C>T Val111Val
M0042942 HENNFBGC_00006 7141 3 Skin 0.06 protein_coding synonymous_variant LOW 465C>T Gly155Gly
M0042943 HENNFBGC_00006 7286 5 Skin 0.09 protein_coding missense_variant MODERATE 610A>C Lys204Gln
M0042944 HENNFBGC_00006 7459 3 Skin 0.06 protein_coding synonymous_variant LOW 783C>A Ser261Ser
M0042945 HENNFBGC_00006 7760 3 Skin 0.06 protein_coding missense_variant MODERATE 1084C>A His362Asn
M0042946 HENNFBGC_00006 7835 4 Skin 0.07 protein_coding missense_variant MODERATE 1159G>A Val387Met
M0042947 HENNFBGC_00006 7864 4 Skin 0.07 protein_coding synonymous_variant LOW 1188A>G Ser396Ser
M0042948 HENNFBGC_00002 7904 4 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4318T>C None
M0042949 HENNFBGC_00003 4199 5 Skin 0.09 protein_coding synonymous_variant LOW 715T>C Leu239Leu
M0042950 HENNFBGC_00003 4362 3 Skin 0.06 protein_coding synonymous_variant LOW 552A>G Ser184Ser
M0042951 HENNFBGC_00002 2830 3 Skin 0.06 protein_coding missense_variant MODERATE 757G>T Ala253Ser
M0042952 HENNFBGC_00002 2902 3 Skin 0.06 protein_coding missense_variant MODERATE 685G>A Val229Ile
M0042953 HENNFBGC_00002 3074 4 Skin 0.07 protein_coding synonymous_variant LOW 513A>G Val171Val
M0042954 HENNFBGC_00002 3092 4 Skin 0.07 protein_coding synonymous_variant LOW 495A>G Leu165Leu
M0042955 HENNFBGC_00002 3296 4 Skin 0.07 protein_coding synonymous_variant LOW 291C>T Tyr97Tyr
M0042956 HENNFBGC_00002 3323 4 Skin 0.07 protein_coding synonymous_variant LOW 264T>A Pro88Pro
M0042957 HENNFBGC_00002 3335 4 Skin 0.07 protein_coding synonymous_variant LOW 252T>C Thr84Thr
M0042958 HENNFBGC_00002 3340 4 Skin 0.07 protein_coding missense_variant MODERATE 247C>A Gln83Lys
M0042959 HENNFBGC_00002 3341 4 Skin 0.07 protein_coding synonymous_variant LOW 246A>G Val82Val
M0042960 HENNFBGC_00002 3365 4 Skin 0.07 protein_coding synonymous_variant LOW 222C>T Arg74Arg
M0042961 HENNFBGC_00006 7553 3 Skin 0.06 protein_coding missense_variant MODERATE 877G>C Val293Leu
M0042962 HENNFBGC_00002 3209 3 Skin 0.06 protein_coding synonymous_variant LOW 378C>T Pro126Pro
M0042963 HENNFBGC_00002 3224 3 Skin 0.06 protein_coding synonymous_variant LOW 363T>C Asp121Asp
M0042964 HENNFBGC_00002 3242 3 Skin 0.06 protein_coding synonymous_variant LOW 345C>T Asp115Asp
M0042965 HENNFBGC_00002 2222 3 Skin 0.06 protein_coding synonymous_variant LOW 1365A>G Lys455Lys
M0042966 HENNFBGC_00004 5916 4 Skin 0.07 protein_coding synonymous_variant LOW 177A>C Leu59Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
HENNFBGC_00001 PHI:10281 unnamedB 73.3 1.3e-32 1 105 1.0000 1.0000 primates skin infection; food poisoning; respiratory disease hypothetical membrane protein increased virulence (hypervirulence)






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
HENNFBGC_00001 1.E.55.3.1 80 2.8e-35 1 105 1.0000 1.0000 1 Channels/Pores 1.E Holins 1.E.55 The <i>Brachyspira</i> holin (B-Hol) Family