Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2519
  Reference Plasmid   1111525849772285_bin.11__k141_97248
  Reference Plasmid Size   10230
  Reference Plasmid GC Content   0.65
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0042967 IJLAGGNP_00004 3899 28 Skin 0.64 protein_coding synonymous_variant LOW 915C>A Thr305Thr
M0042968 IJLAGGNP_00006 5407 13 Skin 0.30 protein_coding synonymous_variant LOW 81T>C Phe27Phe
M0042969 IJLAGGNP_00006 5446 25 Skin 0.57 protein_coding synonymous_variant LOW 120C>T Thr40Thr
M0042970 IJLAGGNP_00006 5488 23 Skin 0.52 protein_coding synonymous_variant LOW 162G>A Thr54Thr
M0042971 IJLAGGNP_00006 5515 24 Skin 0.55 protein_coding synonymous_variant LOW 189C>T Ile63Ile
M0042972 IJLAGGNP_00006 5521 24 Skin 0.55 protein_coding synonymous_variant LOW 195T>C Asp65Asp
M0042973 IJLAGGNP_00006 5983 28 Skin 0.64 protein_coding synonymous_variant LOW 657A>G Leu219Leu
M0042974 IJLAGGNP_00007 6285 23 Skin 0.52 protein_coding synonymous_variant LOW 87C>T Arg29Arg
M0042975 IJLAGGNP_00007 6705 29 Skin 0.66 protein_coding synonymous_variant LOW 507C>T Arg169Arg
M0042976 IJLAGGNP_00007 6708 29 Skin 0.66 protein_coding synonymous_variant LOW 510G>A Val170Val
M0042977 IJLAGGNP_00007 7020 28 Skin 0.64 protein_coding synonymous_variant LOW 822G>A Lys274Lys
M0042978 IJLAGGNP_00007 7095 11 Skin 0.25 protein_coding synonymous_variant LOW 897C>G Thr299Thr
M0042979 IJLAGGNP_00007 7260 15 Skin 0.34 protein_coding synonymous_variant LOW 1062T>C Ser354Ser
M0042980 IJLAGGNP_00007 7282 14 Skin 0.32 protein_coding missense_variant MODERATE 1084T>C Ser362Pro
M0042981 IJLAGGNP_00008 7304 14 Skin 0.32 protein_coding upstream_gene_variant MODIFIER -102A>G None
M0042982 IJLAGGNP_00008 7316 14 Skin 0.32 protein_coding upstream_gene_variant MODIFIER -90T>G None
M0042983 IJLAGGNP_00008 7334 14 Skin 0.32 protein_coding upstream_gene_variant MODIFIER -72T>C None
M0042984 IJLAGGNP_00008 7418 15 Skin 0.34 protein_coding missense_variant MODERATE 13G>C Glu5Gln
M0042985 IJLAGGNP_00008 7432 15 Skin 0.34 protein_coding synonymous_variant LOW 27G>A Pro9Pro
M0042986 IJLAGGNP_00008 7456 16 Skin 0.36 protein_coding synonymous_variant LOW 51A>C Arg17Arg
M0042987 IJLAGGNP_00008 7466 16 Skin 0.36 protein_coding missense_variant MODERATE 61C>T Arg21Cys
M0042988 IJLAGGNP_00008 7480 16 Skin 0.36 protein_coding synonymous_variant LOW 75C>T Val25Val
M0042989 IJLAGGNP_00008 7513 18 Skin 0.41 protein_coding synonymous_variant LOW 108C>T Gly36Gly
M0042990 IJLAGGNP_00008 7570 14 Skin 0.32 protein_coding synonymous_variant LOW 165T>G Gly55Gly
M0042991 IJLAGGNP_00008 7582 15 Skin 0.34 protein_coding synonymous_variant LOW 177T>C Gly59Gly
M0042992 IJLAGGNP_00008 7585 15 Skin 0.34 protein_coding synonymous_variant LOW 180T>C Ile60Ile
M0042993 IJLAGGNP_00008 7756 17 Skin 0.39 protein_coding synonymous_variant LOW 351A>T Val117Val
M0042994 IJLAGGNP_00008 7759 17 Skin 0.39 protein_coding synonymous_variant LOW 354T>C Ala118Ala
M0042995 IJLAGGNP_00008 7777 17 Skin 0.39 protein_coding synonymous_variant LOW 372A>G Ala124Ala
M0042996 IJLAGGNP_00008 7778 17 Skin 0.39 protein_coding missense_variant MODERATE 373A>G Ile125Val
M0042997 IJLAGGNP_00008 7789 17 Skin 0.39 protein_coding synonymous_variant LOW 384C>A Val128Val
M0042998 IJLAGGNP_00008 7819 17 Skin 0.39 protein_coding synonymous_variant LOW 414C>T Cys138Cys
M0042999 IJLAGGNP_00002 1648 9 Skin 0.20 protein_coding missense_variant MODERATE 865G>A Gly289Ser
M0043000 IJLAGGNP_00002 1671 10 Skin 0.23 protein_coding synonymous_variant LOW 888T>C Cys296Cys
M0043001 IJLAGGNP_00003 1753 21 Skin 0.48 protein_coding upstream_gene_variant MODIFIER -30C>T None
M0043002 IJLAGGNP_00003 1905 13 Skin 0.30 protein_coding synonymous_variant LOW 123G>A Glu41Glu
M0043003 IJLAGGNP_00003 2004 10 Skin 0.23 protein_coding synonymous_variant LOW 222T>C His74His
M0043004 IJLAGGNP_00003 2005 10 Skin 0.23 protein_coding synonymous_variant LOW 223C>T Leu75Leu
M0043005 IJLAGGNP_00003 2040 9 Skin 0.20 protein_coding synonymous_variant LOW 258C>T Gly86Gly
M0043006 IJLAGGNP_00003 2106 10 Skin 0.23 protein_coding synonymous_variant LOW 324T>C Ser108Ser
M0043007 IJLAGGNP_00003 2346 21 Skin 0.48 protein_coding synonymous_variant LOW 564T>C Asp188Asp
M0043008 IJLAGGNP_00004 3364 11 Skin 0.25 protein_coding missense_variant MODERATE 380T>A Phe127Tyr
M0043009 IJLAGGNP_00004 4121 21 Skin 0.48 protein_coding synonymous_variant LOW 1137C>T Pro379Pro
M0043010 IJLAGGNP_00004 4124 21 Skin 0.48 protein_coding synonymous_variant LOW 1140C>T Tyr380Tyr
M0043011 IJLAGGNP_00004 4125 21 Skin 0.48 protein_coding missense_variant MODERATE 1141G>A Val381Ile
M0043012 IJLAGGNP_00004 4130 21 Skin 0.48 protein_coding synonymous_variant LOW 1146C>T Gly382Gly
M0043013 IJLAGGNP_00005 5100 14 Skin 0.32 protein_coding synonymous_variant LOW 729T>C Ile243Ile
M0043014 IJLAGGNP_00006 5554 15 Skin 0.34 protein_coding synonymous_variant LOW 228C>G Ser76Ser
M0043015 IJLAGGNP_00006 5692 12 Skin 0.27 protein_coding synonymous_variant LOW 366A>G Val122Val
M0043016 IJLAGGNP_00006 5716 12 Skin 0.27 protein_coding synonymous_variant LOW 390G>C Leu130Leu
M0043017 IJLAGGNP_00006 5717 12 Skin 0.27 protein_coding synonymous_variant LOW 391C>T Leu131Leu
M0043018 IJLAGGNP_00007 6831 13 Skin 0.30 protein_coding synonymous_variant LOW 633C>A Arg211Arg
M0043019 IJLAGGNP_00007 7182 12 Skin 0.27 protein_coding synonymous_variant LOW 984T>C Ile328Ile
M0043020 IJLAGGNP_00001 251 9 Skin 0.20 protein_coding missense_variant MODERATE 194A>C Asn65Thr
M0043021 IJLAGGNP_00001 252 9 Skin 0.20 protein_coding synonymous_variant LOW 195T>C Asn65Asn
M0043022 IJLAGGNP_00001 291 9 Skin 0.20 protein_coding synonymous_variant LOW 234A>G Glu78Glu
M0043023 IJLAGGNP_00001 309 9 Skin 0.20 protein_coding synonymous_variant LOW 252C>A Ala84Ala
M0043024 IJLAGGNP_00001 336 9 Skin 0.20 protein_coding synonymous_variant LOW 279A>G Gln93Gln
M0043025 IJLAGGNP_00001 339 9 Skin 0.20 protein_coding synonymous_variant LOW 282G>A Gln94Gln
M0043026 IJLAGGNP_00001 354 9 Skin 0.20 protein_coding synonymous_variant LOW 297C>A Ala99Ala
M0043027 IJLAGGNP_00001 375 9 Skin 0.20 protein_coding synonymous_variant LOW 318C>T Phe106Phe
M0043028 IJLAGGNP_00002 873 10 Skin 0.23 protein_coding synonymous_variant LOW 90T>C Gly30Gly
M0043029 IJLAGGNP_00002 891 11 Skin 0.25 protein_coding synonymous_variant LOW 108G>C Val36Val
M0043030 IJLAGGNP_00002 914 11 Skin 0.25 protein_coding missense_variant MODERATE 131G>A Gly44Asp
M0043031 IJLAGGNP_00002 915 11 Skin 0.25 protein_coding synonymous_variant LOW 132T>C Gly44Gly
M0043032 IJLAGGNP_00002 1119 14 Skin 0.32 protein_coding synonymous_variant LOW 336C>T Pro112Pro
M0043033 IJLAGGNP_00002 1418 11 Skin 0.25 protein_coding missense_variant MODERATE 635G>A Arg212His
M0043034 IJLAGGNP_00002 1440 11 Skin 0.25 protein_coding synonymous_variant LOW 657G>C Thr219Thr
M0043035 IJLAGGNP_00003 1911 15 Skin 0.34 protein_coding synonymous_variant LOW 129A>G Glu43Glu
M0043036 IJLAGGNP_00004 3632 17 Skin 0.39 protein_coding synonymous_variant LOW 648C>T Pro216Pro
M0043037 IJLAGGNP_00004 3677 16 Skin 0.36 protein_coding synonymous_variant LOW 693A>G Gln231Gln
M0043038 IJLAGGNP_00004 3692 16 Skin 0.36 protein_coding synonymous_variant LOW 708T>C Gly236Gly
M0043039 IJLAGGNP_00005 5043 15 Skin 0.34 protein_coding synonymous_variant LOW 672T>C His224His
M0043040 IJLAGGNP_00005 5067 14 Skin 0.32 protein_coding synonymous_variant LOW 696G>C Arg232Arg
M0043041 IJLAGGNP_00005 5145 7 Skin 0.16 protein_coding synonymous_variant LOW 774T>G Gly258Gly
M0043042 IJLAGGNP_00005 5148 7 Skin 0.16 protein_coding synonymous_variant LOW 777T>A Gly259Gly
M0043043 IJLAGGNP_00005 5160 7 Skin 0.16 protein_coding synonymous_variant LOW 789A>C Ala263Ala
M0043044 IJLAGGNP_00005 5175 6 Skin 0.14 protein_coding synonymous_variant LOW 804C>G Ala268Ala
M0043045 IJLAGGNP_00006 6037 14 Skin 0.32 protein_coding synonymous_variant LOW 711C>T Pro237Pro
M0043046 IJLAGGNP_00002 1619 8 Skin 0.18 protein_coding missense_variant MODERATE 836T>C Val279Ala
M0043047 IJLAGGNP_00004 2718 12 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -267C>A None
M0043048 IJLAGGNP_00004 2725 12 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -260T>C None
M0043049 IJLAGGNP_00004 2745 12 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -240C>G None
M0043050 IJLAGGNP_00004 2761 12 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -224C>A None
M0043051 IJLAGGNP_00004 2786 10 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -199A>G None
M0043052 IJLAGGNP_00004 2799 10 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -186A>G None
M0043053 IJLAGGNP_00004 2819 10 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -166C>A None
M0043054 IJLAGGNP_00004 2826 10 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -159T>C None
M0043055 IJLAGGNP_00004 3122 6 Skin 0.14 protein_coding synonymous_variant LOW 138G>A Arg46Arg
M0043056 IJLAGGNP_00005 4332 11 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -40A>C None
M0043057 IJLAGGNP_00005 4333 11 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -39A>G None
M0043058 IJLAGGNP_00005 4439 11 Skin 0.25 protein_coding missense_variant MODERATE 68A>G His23Arg
M0043059 IJLAGGNP_00006 6067 12 Skin 0.27 protein_coding synonymous_variant LOW 741C>T Ala247Ala
M0043060 IJLAGGNP_00006 6092 12 Skin 0.27 protein_coding missense_variant MODERATE 766A>G Ile256Val
M0043061 IJLAGGNP_00008 7693 24 Skin 0.55 protein_coding synonymous_variant LOW 288C>G Val96Val
M0043062 IJLAGGNP_00008 8053 10 Skin 0.23 protein_coding synonymous_variant LOW 648G>C Ala216Ala
M0043063 IJLAGGNP_00008 8391 11 Skin 0.25 protein_coding missense_variant MODERATE 986T>C Val329Ala
M0043064 IJLAGGNP_00008 8447 16 Skin 0.36 protein_coding missense_variant MODERATE 1042T>C Ser348Pro
M0043065 IJLAGGNP_00008 8506 12 Skin 0.27 protein_coding synonymous_variant LOW 1101G>C Ala367Ala
M0043066 IJLAGGNP_00008 8716 13 Skin 0.30 protein_coding synonymous_variant LOW 1311C>G Ser437Ser
M0043067 IJLAGGNP_00008 8725 13 Skin 0.30 protein_coding synonymous_variant LOW 1320T>G Ala440Ala
M0043068 IJLAGGNP_00009 8821 5 Skin 0.11 protein_coding missense_variant MODERATE 665G>T Cys222Phe
M0043069 IJLAGGNP_00009 8950 4 Skin 0.09 protein_coding missense_variant MODERATE 536G>A Gly179Asp
M0043070 IJLAGGNP_00009 9079 3 Skin 0.07 protein_coding missense_variant MODERATE 407T>G Val136Gly
M0043071 IJLAGGNP_00009 9188 16 Skin 0.36 protein_coding missense_variant MODERATE 298G>C Glu100Gln
M0043072 IJLAGGNP_00009 9579 9 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -94G>A None
M0043073 IJLAGGNP_00009 9605 10 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -120A>C None
M0043074 IJLAGGNP_00009 9608 10 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -123C>T None
M0043075 IJLAGGNP_00009 9644 10 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -159G>A None
M0043076 IJLAGGNP_00009 9689 11 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -204C>G None
M0043077 IJLAGGNP_00009 9723 10 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -238G>A None
M0043078 IJLAGGNP_00009 9732 10 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -247A>G None
M0043079 IJLAGGNP_00009 9782 9 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -297C>T None
M0043080 IJLAGGNP_00009 9785 9 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -300A>C None
M0043081 IJLAGGNP_00007 6807 11 Skin 0.25 protein_coding synonymous_variant LOW 609G>A Lys203Lys
M0043082 IJLAGGNP_00007 6856 13 Skin 0.30 protein_coding missense_variant MODERATE 658G>C Glu220Gln
M0043083 IJLAGGNP_00008 7858 15 Skin 0.34 protein_coding synonymous_variant LOW 453G>C Pro151Pro
M0043084 IJLAGGNP_00008 7870 15 Skin 0.34 protein_coding synonymous_variant LOW 465T>C His155His
M0043085 IJLAGGNP_00008 7880 15 Skin 0.34 protein_coding missense_variant MODERATE 475A>C Asn159His
M0043086 IJLAGGNP_00008 7889 15 Skin 0.34 protein_coding missense_variant MODERATE 484A>C Ser162Arg
M0043087 IJLAGGNP_00008 7912 15 Skin 0.34 protein_coding synonymous_variant LOW 507G>A Leu169Leu
M0043088 IJLAGGNP_00008 7924 15 Skin 0.34 protein_coding synonymous_variant LOW 519G>C Ala173Ala
M0043089 IJLAGGNP_00008 7942 15 Skin 0.34 protein_coding synonymous_variant LOW 537T>C Gly179Gly
M0043090 IJLAGGNP_00008 7948 15 Skin 0.34 protein_coding synonymous_variant LOW 543T>C Gly181Gly
M0043091 IJLAGGNP_00008 7949 15 Skin 0.34 protein_coding missense_variant MODERATE 544G>A Val182Ile
M0043092 IJLAGGNP_00008 7954 15 Skin 0.34 protein_coding synonymous_variant LOW 549C>G Gly183Gly
M0043093 IJLAGGNP_00008 7957 15 Skin 0.34 protein_coding synonymous_variant LOW 552C>T Pro184Pro
M0043094 IJLAGGNP_00008 7963 15 Skin 0.34 protein_coding synonymous_variant LOW 558G>C Thr186Thr
M0043095 IJLAGGNP_00001 480 6 Skin 0.14 protein_coding synonymous_variant LOW 423A>C Ala141Ala
M0043096 IJLAGGNP_00001 516 6 Skin 0.14 protein_coding synonymous_variant LOW 459G>A Ala153Ala
M0043097 IJLAGGNP_00001 526 6 Skin 0.14 protein_coding synonymous_variant LOW 469C>T Leu157Leu
M0043098 IJLAGGNP_00002 709 10 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -75G>A None
M0043099 IJLAGGNP_00002 782 9 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -2C>T None
M0043100 IJLAGGNP_00002 1026 14 Skin 0.32 protein_coding synonymous_variant LOW 243C>A Ala81Ala
M0043101 IJLAGGNP_00002 831 7 Skin 0.16 protein_coding synonymous_variant LOW 48G>A Pro16Pro
M0043102 IJLAGGNP_00004 3236 9 Skin 0.20 protein_coding synonymous_variant LOW 252T>C Gly84Gly
M0043103 IJLAGGNP_00009 9923 4 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -438G>A None
M0043104 IJLAGGNP_00009 10094 8 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -609C>G None
M0043105 IJLAGGNP_00009 10100 8 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -615A>G None
M0043106 IJLAGGNP_00009 10103 8 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -618A>G None
M0043107 IJLAGGNP_00001 588 6 Skin 0.14 protein_coding synonymous_variant LOW 531A>C Leu177Leu
M0043108 IJLAGGNP_00001 591 6 Skin 0.14 protein_coding synonymous_variant LOW 534A>G Lys178Lys
M0043109 IJLAGGNP_00002 1492 12 Skin 0.27 protein_coding missense_variant MODERATE 709G>A Val237Ile
M0043110 IJLAGGNP_00002 1504 12 Skin 0.27 protein_coding missense_variant MODERATE 721C>T Pro241Ser
M0043111 IJLAGGNP_00002 1596 6 Skin 0.14 protein_coding synonymous_variant LOW 813G>A Ala271Ala
M0043112 IJLAGGNP_00001 147 7 Skin 0.16 protein_coding synonymous_variant LOW 90A>G Glu30Glu
M0043113 IJLAGGNP_00001 199 7 Skin 0.16 protein_coding missense_variant MODERATE 142A>T Thr48Ser
M0043114 IJLAGGNP_00002 1373 7 Skin 0.16 protein_coding missense_variant MODERATE 590A>C Gln197Pro
M0043115 IJLAGGNP_00008 8080 9 Skin 0.20 protein_coding synonymous_variant LOW 675T>C Phe225Phe
M0043116 IJLAGGNP_00008 8107 6 Skin 0.14 protein_coding synonymous_variant LOW 702A>G Thr234Thr
M0043117 IJLAGGNP_00008 8110 6 Skin 0.14 protein_coding synonymous_variant LOW 705C>G Pro235Pro
M0043118 IJLAGGNP_00008 8135 7 Skin 0.16 protein_coding missense_variant MODERATE 730A>G Asn244Asp
M0043119 IJLAGGNP_00008 8230 5 Skin 0.11 protein_coding synonymous_variant LOW 825G>T Arg275Arg
M0043120 IJLAGGNP_00002 1242 5 Skin 0.11 protein_coding synonymous_variant LOW 459G>A Leu153Leu
M0043121 IJLAGGNP_00009 9500 10 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -15T>G None
M0043122 IJLAGGNP_00009 9510 10 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -25T>C None
M0043123 IJLAGGNP_00003 2253 8 Skin 0.18 protein_coding synonymous_variant LOW 471T>C Phe157Phe
M0043124 IJLAGGNP_00004 4232 4 Skin 0.09 protein_coding synonymous_variant LOW 1248T>C Leu416Leu
M0043125 IJLAGGNP_00008 8590 6 Skin 0.14 protein_coding synonymous_variant LOW 1185C>T Ile395Ile
M0043126 IJLAGGNP_00008 8599 6 Skin 0.14 protein_coding missense_variant MODERATE 1194C>G Asn398Lys
M0043127 IJLAGGNP_00008 8877 3 Skin 0.07 protein_coding missense_variant MODERATE 1472C>T Thr491Met
M0043128 IJLAGGNP_00009 8888 3 Skin 0.07 protein_coding missense_variant MODERATE 598T>G Ser200Ala
M0043129 IJLAGGNP_00009 10127 7 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -642C>T None
M0043130 IJLAGGNP_00008 8565 4 Skin 0.09 protein_coding missense_variant MODERATE 1160G>C Ser387Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
IJLAGGNP_00004 3.A.1.1.49 76.5 2.8e-198 6 434 0.9885 1.1689 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
IJLAGGNP_00005 3.A.1.1.49 88.9 7.5e-140 27 313 0.9140 0.7847 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
IJLAGGNP_00006 3.A.1.1.49 86.6 5.4e-134 2 277 0.9964 0.7520 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
IJLAGGNP_00007 3.A.1.1.49 78.2 8.6e-164 1 367 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily