Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2522
  Reference Plasmid   1111525849772552_bin.4__k141_321438
  Reference Plasmid Size   162833
  Reference Plasmid GC Content   0.55
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0043414 LGJPBMKF_00137 151878 3 Skin 0.10 protein_coding synonymous_variant LOW 624A>G Gln208Gln
M0043415 LGJPBMKF_00112 124606 3 Skin 0.10 protein_coding missense_variant MODERATE 1061G>C Ser354Thr
M0043416 LGJPBMKF_00109 125890 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2915G>A None
M0043417 LGJPBMKF_00109 125893 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2918G>A None
M0043418 LGJPBMKF_00109 126464 4 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3489A>G None
M0043419 LGJPBMKF_00109 126528 4 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -3553T>A None
M0043420 LGJPBMKF_00113 126751 3 Skin 0.10 protein_coding synonymous_variant LOW 117C>T Ser39Ser
M0043421 LGJPBMKF_00113 126799 3 Skin 0.10 protein_coding synonymous_variant LOW 165T>A Arg55Arg
M0043422 LGJPBMKF_00113 126874 3 Skin 0.10 protein_coding synonymous_variant LOW 240A>G Ala80Ala
M0043423 LGJPBMKF_00113 126892 3 Skin 0.10 protein_coding synonymous_variant LOW 258G>A Glu86Glu
M0043424 LGJPBMKF_00113 126895 3 Skin 0.10 protein_coding synonymous_variant LOW 261G>C Ser87Ser
M0043425 LGJPBMKF_00113 126898 3 Skin 0.10 protein_coding synonymous_variant LOW 264C>T Val88Val
M0043426 LGJPBMKF_00113 126904 3 Skin 0.10 protein_coding synonymous_variant LOW 270T>C Ile90Ile
M0043427 LGJPBMKF_00113 126910 3 Skin 0.10 protein_coding synonymous_variant LOW 276T>C Thr92Thr
M0043428 LGJPBMKF_00113 126982 4 Skin 0.13 protein_coding synonymous_variant LOW 348T>G Pro116Pro
M0043429 LGJPBMKF_00113 126985 4 Skin 0.13 protein_coding synonymous_variant LOW 351T>G Arg117Arg
M0043430 LGJPBMKF_00113 126991 4 Skin 0.13 protein_coding synonymous_variant LOW 357C>T Phe119Phe
M0043431 LGJPBMKF_00113 126994 4 Skin 0.13 protein_coding synonymous_variant LOW 360C>T Pro120Pro
M0043432 LGJPBMKF_00113 126995 4 Skin 0.13 protein_coding synonymous_variant LOW 361T>C Leu121Leu
M0043433 LGJPBMKF_00113 126997 4 Skin 0.13 protein_coding synonymous_variant LOW 363G>A Leu121Leu
M0043434 LGJPBMKF_00113 127267 3 Skin 0.10 protein_coding synonymous_variant LOW 633G>A Arg211Arg
M0043435 LGJPBMKF_00113 127270 3 Skin 0.10 protein_coding synonymous_variant LOW 636A>G Leu212Leu
M0043436 LGJPBMKF_00113 127273 3 Skin 0.10 protein_coding synonymous_variant LOW 639A>G Arg213Arg
M0043437 LGJPBMKF_00113 127328 3 Skin 0.10 protein_coding missense_variant MODERATE 694C>T Leu232Phe
M0043438 LGJPBMKF_00113 127330 3 Skin 0.10 protein_coding synonymous_variant LOW 696C>G Leu232Leu
M0043439 LGJPBMKF_00113 127342 4 Skin 0.13 protein_coding synonymous_variant LOW 708G>A Leu236Leu
M0043440 LGJPBMKF_00113 127347 4 Skin 0.13 protein_coding missense_variant MODERATE 713G>A Ser238Asn
M0043441 LGJPBMKF_00113 127351 4 Skin 0.13 protein_coding synonymous_variant LOW 717C>T Tyr239Tyr
M0043442 LGJPBMKF_00113 127357 4 Skin 0.13 protein_coding synonymous_variant LOW 723A>T Val241Val
M0043443 LGJPBMKF_00113 127366 4 Skin 0.13 protein_coding synonymous_variant LOW 732C>T Cys244Cys
M0043444 LGJPBMKF_00113 127409 4 Skin 0.13 protein_coding missense_variant MODERATE 775T>A Ser259Thr
M0043445 LGJPBMKF_00113 127414 4 Skin 0.13 protein_coding synonymous_variant LOW 780G>A Ala260Ala
M0043446 LGJPBMKF_00113 127417 4 Skin 0.13 protein_coding missense_variant MODERATE 783C>A Asp261Glu
M0043447 LGJPBMKF_00113 127428 4 Skin 0.13 protein_coding missense_variant MODERATE 794G>A Arg265Gln
M0043448 LGJPBMKF_00113 127429 4 Skin 0.13 protein_coding synonymous_variant LOW 795G>A Arg265Arg
M0043449 LGJPBMKF_00113 127435 4 Skin 0.13 protein_coding synonymous_variant LOW 801A>G Val267Val
M0043450 LGJPBMKF_00113 127449 3 Skin 0.10 protein_coding missense_variant MODERATE 815G>A Arg272His
M0043451 LGJPBMKF_00113 127453 4 Skin 0.13 protein_coding synonymous_variant LOW 819C>T Tyr273Tyr
M0043452 LGJPBMKF_00113 127459 4 Skin 0.13 protein_coding synonymous_variant LOW 825C>G Val275Val
M0043453 LGJPBMKF_00113 127463 4 Skin 0.13 protein_coding synonymous_variant LOW 829T>C Leu277Leu
M0043454 LGJPBMKF_00113 127465 4 Skin 0.13 protein_coding synonymous_variant LOW 831A>G Leu277Leu
M0043455 LGJPBMKF_00113 127519 3 Skin 0.10 protein_coding synonymous_variant LOW 885C>T Pro295Pro
M0043456 LGJPBMKF_00113 127883 4 Skin 0.13 protein_coding missense_variant MODERATE 1249A>G Thr417Ala
M0043457 LGJPBMKF_00113 128020 4 Skin 0.13 protein_coding synonymous_variant LOW 1386T>C Gly462Gly
M0043458 LGJPBMKF_00114 128795 4 Skin 0.13 protein_coding synonymous_variant LOW 429A>G Gln143Gln
M0043459 LGJPBMKF_00114 129131 3 Skin 0.10 protein_coding synonymous_variant LOW 765A>C Gly255Gly
M0043460 LGJPBMKF_00114 129245 3 Skin 0.10 protein_coding synonymous_variant LOW 879A>G Ala293Ala
M0043461 LGJPBMKF_00114 129284 4 Skin 0.13 protein_coding synonymous_variant LOW 918A>G Ser306Ser
M0043462 LGJPBMKF_00115 129817 3 Skin 0.10 protein_coding synonymous_variant LOW 288C>T Asn96Asn
M0043463 LGJPBMKF_00115 129973 4 Skin 0.13 protein_coding synonymous_variant LOW 444T>G Ala148Ala
M0043464 LGJPBMKF_00115 130486 3 Skin 0.10 protein_coding synonymous_variant LOW 957A>G Gln319Gln
M0043465 LGJPBMKF_00116 130692 5 Skin 0.16 protein_coding missense_variant MODERATE 148A>C Lys50Gln
M0043466 LGJPBMKF_00116 130697 5 Skin 0.16 protein_coding synonymous_variant LOW 153T>C Ser51Ser
M0043467 LGJPBMKF_00116 130733 5 Skin 0.16 protein_coding synonymous_variant LOW 189G>C Thr63Thr
M0043468 LGJPBMKF_00116 130745 5 Skin 0.16 protein_coding synonymous_variant LOW 201C>G Thr67Thr
M0043469 LGJPBMKF_00116 130748 5 Skin 0.16 protein_coding synonymous_variant LOW 204T>C Leu68Leu
M0043470 LGJPBMKF_00116 130751 5 Skin 0.16 protein_coding synonymous_variant LOW 207C>T Ala69Ala
M0043471 LGJPBMKF_00118 132759 3 Skin 0.10 protein_coding synonymous_variant LOW 468T>C Ala156Ala
M0043472 LGJPBMKF_00118 133267 3 Skin 0.10 protein_coding missense_variant MODERATE 976C>G Pro326Ala
M0043473 LGJPBMKF_00006 4500 5 Skin 0.16 protein_coding missense_variant MODERATE 1090A>C Ser364Arg
M0043474 LGJPBMKF_00006 4970 4 Skin 0.13 protein_coding synonymous_variant LOW 1560T>C Ile520Ile
M0043475 LGJPBMKF_00006 5210 5 Skin 0.16 protein_coding synonymous_variant LOW 1800A>G Gly600Gly
M0043476 LGJPBMKF_00006 5258 5 Skin 0.16 protein_coding synonymous_variant LOW 1848A>G Pro616Pro
M0043477 LGJPBMKF_00006 5270 5 Skin 0.16 protein_coding synonymous_variant LOW 1860T>A Gly620Gly
M0043478 LGJPBMKF_00006 5384 3 Skin 0.10 protein_coding synonymous_variant LOW 1974G>T Gly658Gly
M0043479 LGJPBMKF_00006 5385 3 Skin 0.10 protein_coding missense_variant MODERATE 1975G>T Ala659Ser
M0043480 LGJPBMKF_00006 5489 4 Skin 0.13 protein_coding synonymous_variant LOW 2079C>T His693His
M0043481 LGJPBMKF_00006 5675 3 Skin 0.10 protein_coding synonymous_variant LOW 2265G>C Arg755Arg
M0043482 LGJPBMKF_00006 5738 3 Skin 0.10 protein_coding synonymous_variant LOW 2328G>T Arg776Arg
M0043483 LGJPBMKF_00006 5752 3 Skin 0.10 protein_coding missense_variant MODERATE 2342C>T Pro781Leu
M0043484 LGJPBMKF_00006 5762 4 Skin 0.13 protein_coding synonymous_variant LOW 2352T>C Arg784Arg
M0043485 LGJPBMKF_00008 7815 3 Skin 0.10 protein_coding synonymous_variant LOW 135T>G Ala45Ala
M0043486 LGJPBMKF_00008 7890 5 Skin 0.16 protein_coding synonymous_variant LOW 210T>G Ala70Ala
M0043487 LGJPBMKF_00008 7947 4 Skin 0.13 protein_coding synonymous_variant LOW 267C>T Asn89Asn
M0043488 LGJPBMKF_00008 7983 4 Skin 0.13 protein_coding synonymous_variant LOW 303A>G Pro101Pro
M0043489 LGJPBMKF_00008 7992 5 Skin 0.16 protein_coding synonymous_variant LOW 312A>G Leu104Leu
M0043490 LGJPBMKF_00008 8053 5 Skin 0.16 protein_coding missense_variant MODERATE 373G>A Val125Met
M0043491 LGJPBMKF_00008 8067 5 Skin 0.16 protein_coding synonymous_variant LOW 387A>G Arg129Arg
M0043492 LGJPBMKF_00008 8070 5 Skin 0.16 protein_coding synonymous_variant LOW 390A>T Val130Val
M0043493 LGJPBMKF_00009 8186 4 Skin 0.13 protein_coding synonymous_variant LOW 42C>T Asp14Asp
M0043494 LGJPBMKF_00009 8201 5 Skin 0.16 protein_coding synonymous_variant LOW 57T>A Ala19Ala
M0043495 LGJPBMKF_00009 8375 5 Skin 0.16 protein_coding synonymous_variant LOW 231C>G Gly77Gly
M0043496 LGJPBMKF_00009 8469 3 Skin 0.10 protein_coding missense_variant MODERATE 325T>A Cys109Ser
M0043497 LGJPBMKF_00009 8501 3 Skin 0.10 protein_coding synonymous_variant LOW 357A>G Leu119Leu
M0043498 LGJPBMKF_00009 8510 3 Skin 0.10 protein_coding synonymous_variant LOW 366A>G Leu122Leu
M0043499 LGJPBMKF_00009 8548 3 Skin 0.10 protein_coding missense_variant MODERATE 404T>C Val135Ala
M0043500 LGJPBMKF_00009 8573 5 Skin 0.16 protein_coding synonymous_variant LOW 429C>T Asp143Asp
M0043501 LGJPBMKF_00009 8633 3 Skin 0.10 protein_coding synonymous_variant LOW 489A>G Leu163Leu
M0043502 LGJPBMKF_00009 8666 5 Skin 0.16 protein_coding synonymous_variant LOW 522T>C Ser174Ser
M0043503 LGJPBMKF_00009 8760 3 Skin 0.10 protein_coding missense_variant MODERATE 616G>A Val206Ile
M0043504 LGJPBMKF_00009 8786 3 Skin 0.10 protein_coding synonymous_variant LOW 642A>G Leu214Leu
M0043505 LGJPBMKF_00009 8794 3 Skin 0.10 protein_coding missense_variant MODERATE 650A>T Glu217Val
M0043506 LGJPBMKF_00009 8879 3 Skin 0.10 protein_coding synonymous_variant LOW 735T>A Ala245Ala
M0043507 LGJPBMKF_00009 9011 3 Skin 0.10 protein_coding synonymous_variant LOW 867G>A Pro289Pro
M0043508 LGJPBMKF_00102 115502 3 Skin 0.10 protein_coding synonymous_variant LOW 1143T>C Asn381Asn
M0043509 LGJPBMKF_00102 115505 3 Skin 0.10 protein_coding synonymous_variant LOW 1146A>G Pro382Pro
M0043510 LGJPBMKF_00102 115571 3 Skin 0.10 protein_coding synonymous_variant LOW 1212A>C Ile404Ile
M0043511 LGJPBMKF_00102 115814 3 Skin 0.10 protein_coding synonymous_variant LOW 1455A>G Ala485Ala
M0043512 LGJPBMKF_00102 115913 3 Skin 0.10 protein_coding synonymous_variant LOW 1554A>G Pro518Pro
M0043513 LGJPBMKF_00098 115975 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4663T>C None
M0043514 LGJPBMKF_00103 116264 3 Skin 0.10 protein_coding synonymous_variant LOW 177T>C Asp59Asp
M0043515 LGJPBMKF_00103 116315 3 Skin 0.10 protein_coding synonymous_variant LOW 228T>C Tyr76Tyr
M0043516 LGJPBMKF_00103 116369 3 Skin 0.10 protein_coding synonymous_variant LOW 282T>C Leu94Leu
M0043517 LGJPBMKF_00103 116564 3 Skin 0.10 protein_coding synonymous_variant LOW 477A>G Thr159Thr
M0043518 LGJPBMKF_00103 116585 3 Skin 0.10 protein_coding synonymous_variant LOW 498T>C Phe166Phe
M0043519 LGJPBMKF_00103 116642 3 Skin 0.10 protein_coding synonymous_variant LOW 555A>G Lys185Lys
M0043520 LGJPBMKF_00103 116687 3 Skin 0.10 protein_coding synonymous_variant LOW 600A>T Ala200Ala
M0043521 LGJPBMKF_00103 116694 3 Skin 0.10 protein_coding synonymous_variant LOW 607C>T Leu203Leu
M0043522 LGJPBMKF_00103 116702 3 Skin 0.10 protein_coding synonymous_variant LOW 615A>G Gln205Gln
M0043523 LGJPBMKF_00104 117255 3 Skin 0.10 protein_coding synonymous_variant LOW 444A>G Leu148Leu
M0043524 LGJPBMKF_00104 117549 3 Skin 0.10 protein_coding missense_variant MODERATE 150T>G Ile50Met
M0043525 LGJPBMKF_00104 117561 3 Skin 0.10 protein_coding synonymous_variant LOW 138G>A Thr46Thr
M0043526 LGJPBMKF_00104 117570 3 Skin 0.10 protein_coding synonymous_variant LOW 129A>C Thr43Thr
M0043527 LGJPBMKF_00105 118508 3 Skin 0.10 protein_coding synonymous_variant LOW 627A>C Ala209Ala
M0043528 LGJPBMKF_00105 118601 3 Skin 0.10 protein_coding synonymous_variant LOW 720T>C Ile240Ile
M0043529 LGJPBMKF_00105 118611 3 Skin 0.10 protein_coding missense_variant MODERATE 730A>C Asn244His
M0043530 LGJPBMKF_00105 118649 3 Skin 0.10 protein_coding synonymous_variant LOW 768T>A Ile256Ile
M0043531 LGJPBMKF_00105 118688 3 Skin 0.10 protein_coding synonymous_variant LOW 807C>T Ser269Ser
M0043532 LGJPBMKF_00106 118733 3 Skin 0.10 protein_coding missense_variant MODERATE 1162A>G Thr388Ala
M0043533 LGJPBMKF_00106 119064 4 Skin 0.13 protein_coding synonymous_variant LOW 831T>C Ser277Ser
M0043534 LGJPBMKF_00106 119070 3 Skin 0.10 protein_coding synonymous_variant LOW 825C>T Cys275Cys
M0043535 LGJPBMKF_00106 119076 3 Skin 0.10 protein_coding synonymous_variant LOW 819G>C Ala273Ala
M0043536 LGJPBMKF_00106 119205 4 Skin 0.13 protein_coding synonymous_variant LOW 690C>G Gly230Gly
M0043537 LGJPBMKF_00106 119208 4 Skin 0.13 protein_coding synonymous_variant LOW 687C>G Pro229Pro
M0043538 LGJPBMKF_00106 119355 4 Skin 0.13 protein_coding synonymous_variant LOW 540T>C Ile180Ile
M0043539 LGJPBMKF_00106 119773 4 Skin 0.13 protein_coding missense_variant MODERATE 122C>G Ala41Gly
M0043540 LGJPBMKF_00107 120376 4 Skin 0.13 protein_coding missense_variant MODERATE 388T>A Ser130Thr
M0043541 LGJPBMKF_00108 121775 5 Skin 0.16 protein_coding synonymous_variant LOW 1008A>G Val336Val
M0043542 LGJPBMKF_00108 122468 3 Skin 0.10 protein_coding synonymous_variant LOW 1701T>C Ile567Ile
M0043543 LGJPBMKF_00108 122499 3 Skin 0.10 protein_coding synonymous_variant LOW 1732T>C Leu578Leu
M0043544 LGJPBMKF_00109 122814 3 Skin 0.10 protein_coding missense_variant MODERATE 162C>G Asp54Glu
M0043545 LGJPBMKF_00110 123255 3 Skin 0.10 protein_coding missense_variant MODERATE 5C>A Ala2Glu
M0043546 LGJPBMKF_00084 94926 4 Skin 0.13 protein_coding missense_variant MODERATE 505C>G Gln169Glu
M0043547 LGJPBMKF_00084 94933 4 Skin 0.13 protein_coding synonymous_variant LOW 498G>A Lys166Lys
M0043548 LGJPBMKF_00084 94945 5 Skin 0.16 protein_coding synonymous_variant LOW 486G>T Gly162Gly
M0043549 LGJPBMKF_00084 95033 5 Skin 0.16 protein_coding missense_variant MODERATE 398C>T Ala133Val
M0043550 LGJPBMKF_00084 95058 5 Skin 0.16 protein_coding missense_variant MODERATE 373G>A Ala125Thr
M0043551 LGJPBMKF_00084 95095 5 Skin 0.16 protein_coding synonymous_variant LOW 336T>C Phe112Phe
M0043552 LGJPBMKF_00084 95242 4 Skin 0.13 protein_coding synonymous_variant LOW 189G>T Arg63Arg
M0043553 LGJPBMKF_00082 95487 5 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -2918A>T None
M0043554 LGJPBMKF_00082 95513 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2944A>G None
M0043555 LGJPBMKF_00082 95607 5 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -3038A>G None
M0043556 LGJPBMKF_00085 95737 3 Skin 0.10 protein_coding synonymous_variant LOW 918A>T Pro306Pro
M0043557 LGJPBMKF_00085 96013 5 Skin 0.16 protein_coding synonymous_variant LOW 642C>T Asn214Asn
M0043558 LGJPBMKF_00085 96583 3 Skin 0.10 protein_coding synonymous_variant LOW 72A>G Gln24Gln
M0043559 LGJPBMKF_00086 97041 3 Skin 0.10 protein_coding synonymous_variant LOW 411G>A Val137Val
M0043560 LGJPBMKF_00086 97080 6 Skin 0.19 protein_coding synonymous_variant LOW 372T>C Asp124Asp
M0043561 LGJPBMKF_00086 97173 3 Skin 0.10 protein_coding synonymous_variant LOW 279G>A Pro93Pro
M0043562 LGJPBMKF_00086 97236 6 Skin 0.19 protein_coding synonymous_variant LOW 216A>G Gln72Gln
M0043563 LGJPBMKF_00087 97496 6 Skin 0.19 protein_coding synonymous_variant LOW 693G>C Gly231Gly
M0043564 LGJPBMKF_00001 82 3 Skin 0.10 protein_coding synonymous_variant LOW 42A>G Glu14Glu
M0043565 LGJPBMKF_00001 154 3 Skin 0.10 protein_coding synonymous_variant LOW 114G>C Ala38Ala
M0043566 LGJPBMKF_00002 256 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -129C>G None
M0043567 LGJPBMKF_00002 485 3 Skin 0.10 protein_coding missense_variant MODERATE 101A>G Tyr34Cys
M0043568 LGJPBMKF_00003 818 3 Skin 0.10 protein_coding synonymous_variant LOW 255C>T Asp85Asp
M0043569 LGJPBMKF_00004 1388 3 Skin 0.10 protein_coding synonymous_variant LOW 291T>C Ser97Ser
M0043570 LGJPBMKF_00004 2048 3 Skin 0.10 protein_coding synonymous_variant LOW 951A>G Val317Val
M0043571 LGJPBMKF_00005 2911 4 Skin 0.13 protein_coding synonymous_variant LOW 159A>G Thr53Thr
M0043572 LGJPBMKF_00005 2983 3 Skin 0.10 protein_coding synonymous_variant LOW 231C>T Thr77Thr
M0043573 LGJPBMKF_00006 3641 4 Skin 0.13 protein_coding synonymous_variant LOW 231A>G Pro77Pro
M0043574 LGJPBMKF_00006 3671 4 Skin 0.13 protein_coding synonymous_variant LOW 261T>C Ser87Ser
M0043575 LGJPBMKF_00006 4001 4 Skin 0.13 protein_coding synonymous_variant LOW 591T>C Thr197Thr
M0043576 LGJPBMKF_00006 4091 4 Skin 0.13 protein_coding synonymous_variant LOW 681A>G Ser227Ser
M0043577 LGJPBMKF_00006 4136 4 Skin 0.13 protein_coding synonymous_variant LOW 726A>C Val242Val
M0043578 LGJPBMKF_00006 4175 4 Skin 0.13 protein_coding synonymous_variant LOW 765T>C Ile255Ile
M0043579 LGJPBMKF_00006 4187 4 Skin 0.13 protein_coding synonymous_variant LOW 777T>C Asn259Asn
M0043580 LGJPBMKF_00006 4314 4 Skin 0.13 protein_coding missense_variant MODERATE 904T>C Ser302Pro
M0043581 LGJPBMKF_00006 4318 4 Skin 0.13 protein_coding missense_variant MODERATE 908C>T Ala303Val
M0043582 LGJPBMKF_00006 5264 4 Skin 0.13 protein_coding synonymous_variant LOW 1854T>C Gly618Gly
M0043583 LGJPBMKF_00006 5265 3 Skin 0.10 protein_coding missense_variant MODERATE 1855A>T Thr619Ser
M0043584 LGJPBMKF_00005 2824 3 Skin 0.10 protein_coding synonymous_variant LOW 72G>A Lys24Lys
M0043585 LGJPBMKF_00006 3518 3 Skin 0.10 protein_coding synonymous_variant LOW 108A>C Pro36Pro
M0043586 LGJPBMKF_00009 8663 3 Skin 0.10 protein_coding synonymous_variant LOW 519C>T Asn173Asn
M0043587 LGJPBMKF_00009 8672 3 Skin 0.10 protein_coding synonymous_variant LOW 528C>T Gly176Gly
M0043588 LGJPBMKF_00009 8683 3 Skin 0.10 protein_coding missense_variant MODERATE 539C>T Ala180Val
M0043589 LGJPBMKF_00067 76317 3 Skin 0.10 protein_coding missense_variant MODERATE 713G>A Ser238Asn
M0043590 LGJPBMKF_00067 76429 3 Skin 0.10 protein_coding synonymous_variant LOW 825A>G Ala275Ala
M0043591 LGJPBMKF_00067 76483 3 Skin 0.10 protein_coding synonymous_variant LOW 879C>G Val293Val
M0043592 LGJPBMKF_00067 76486 3 Skin 0.10 protein_coding synonymous_variant LOW 882T>G Pro294Pro
M0043593 LGJPBMKF_00067 76744 3 Skin 0.10 protein_coding synonymous_variant LOW 1140C>T Ala380Ala
M0043594 LGJPBMKF_00067 76763 3 Skin 0.10 protein_coding missense_variant MODERATE 1159A>G Thr387Ala
M0043595 LGJPBMKF_00067 76804 3 Skin 0.10 protein_coding synonymous_variant LOW 1200G>A Thr400Thr
M0043596 LGJPBMKF_00068 77015 3 Skin 0.10 protein_coding synonymous_variant LOW 60A>G Pro20Pro
M0043597 LGJPBMKF_00068 77192 3 Skin 0.10 protein_coding synonymous_variant LOW 237G>A Leu79Leu
M0043598 LGJPBMKF_00068 77195 4 Skin 0.13 protein_coding synonymous_variant LOW 240T>A Leu80Leu
M0043599 LGJPBMKF_00068 77294 3 Skin 0.10 protein_coding synonymous_variant LOW 339A>G Pro113Pro
M0043600 LGJPBMKF_00068 77495 4 Skin 0.13 protein_coding synonymous_variant LOW 540T>C Ser180Ser
M0043601 LGJPBMKF_00068 77690 3 Skin 0.10 protein_coding synonymous_variant LOW 735G>C Arg245Arg
M0043602 LGJPBMKF_00070 80242 3 Skin 0.10 protein_coding missense_variant MODERATE 734G>A Arg245Gln
M0043603 LGJPBMKF_00071 81431 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -91C>A None
M0043604 LGJPBMKF_00071 81490 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -150T>C None
M0043605 LGJPBMKF_00072 82054 3 Skin 0.10 protein_coding missense_variant MODERATE 137T>C Leu46Pro
M0043606 LGJPBMKF_00071 82096 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -756C>T None
M0043607 LGJPBMKF_00116 130730 4 Skin 0.13 protein_coding synonymous_variant LOW 186G>C Val62Val
M0043608 LGJPBMKF_00116 131007 4 Skin 0.13 protein_coding missense_variant MODERATE 463A>C Asn155His
M0043609 LGJPBMKF_00116 131087 3 Skin 0.10 protein_coding synonymous_variant LOW 543T>C Leu181Leu
M0043610 LGJPBMKF_00116 131120 3 Skin 0.10 protein_coding synonymous_variant LOW 576G>A Leu192Leu
M0043611 LGJPBMKF_00119 137855 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -3762T>G None
M0043612 LGJPBMKF_00123 137963 3 Skin 0.10 protein_coding missense_variant MODERATE 58A>G Thr20Ala
M0043613 LGJPBMKF_00123 138046 3 Skin 0.10 protein_coding synonymous_variant LOW 141C>T Ser47Ser
M0043614 LGJPBMKF_00123 138055 3 Skin 0.10 protein_coding synonymous_variant LOW 150C>A Ser50Ser
M0043615 LGJPBMKF_00123 138070 3 Skin 0.10 protein_coding synonymous_variant LOW 165G>A Ser55Ser
M0043616 LGJPBMKF_00123 138094 3 Skin 0.10 protein_coding synonymous_variant LOW 189T>A Ile63Ile
M0043617 LGJPBMKF_00123 138148 3 Skin 0.10 protein_coding missense_variant MODERATE 243T>A Asn81Lys
M0043618 LGJPBMKF_00123 138676 3 Skin 0.10 protein_coding synonymous_variant LOW 771T>C Thr257Thr
M0043619 LGJPBMKF_00123 138709 3 Skin 0.10 protein_coding synonymous_variant LOW 804T>G Pro268Pro
M0043620 LGJPBMKF_00123 138865 3 Skin 0.10 protein_coding synonymous_variant LOW 960A>T Ile320Ile
M0043621 LGJPBMKF_00123 139174 3 Skin 0.10 protein_coding synonymous_variant LOW 1269A>G Glu423Glu
M0043622 LGJPBMKF_00123 139231 3 Skin 0.10 protein_coding synonymous_variant LOW 1326T>C Ala442Ala
M0043623 LGJPBMKF_00123 139345 3 Skin 0.10 protein_coding synonymous_variant LOW 1440C>G Ala480Ala
M0043624 LGJPBMKF_00123 139350 3 Skin 0.10 protein_coding missense_variant MODERATE 1445A>C Asp482Ala
M0043625 LGJPBMKF_00123 139357 3 Skin 0.10 protein_coding synonymous_variant LOW 1452C>T Leu484Leu
M0043626 LGJPBMKF_00123 139369 3 Skin 0.10 protein_coding synonymous_variant LOW 1464T>C Ala488Ala
M0043627 LGJPBMKF_00124 139585 3 Skin 0.10 protein_coding missense_variant MODERATE 64T>C Ser22Pro
M0043628 LGJPBMKF_00124 139617 3 Skin 0.10 protein_coding synonymous_variant LOW 96C>T Asp32Asp
M0043629 LGJPBMKF_00125 139845 3 Skin 0.10 protein_coding synonymous_variant LOW 369A>G Pro123Pro
M0043630 LGJPBMKF_00125 139848 3 Skin 0.10 protein_coding synonymous_variant LOW 366A>G Val122Val
M0043631 LGJPBMKF_00125 139908 3 Skin 0.10 protein_coding synonymous_variant LOW 306A>G Val102Val
M0043632 LGJPBMKF_00125 139950 3 Skin 0.10 protein_coding synonymous_variant LOW 264T>C Ile88Ile
M0043633 LGJPBMKF_00125 139971 3 Skin 0.10 protein_coding synonymous_variant LOW 243C>G Ser81Ser
M0043634 LGJPBMKF_00125 139992 3 Skin 0.10 protein_coding synonymous_variant LOW 222C>T Leu74Leu
M0043635 LGJPBMKF_00125 140004 3 Skin 0.10 protein_coding synonymous_variant LOW 210G>A Lys70Lys
M0043636 LGJPBMKF_00125 140055 3 Skin 0.10 protein_coding synonymous_variant LOW 159A>G Leu53Leu
M0043637 LGJPBMKF_00122 141474 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -3863A>G None
M0043638 LGJPBMKF_00129 142938 3 Skin 0.10 protein_coding synonymous_variant LOW 222A>G Leu74Leu
M0043639 LGJPBMKF_00130 143359 3 Skin 0.10 protein_coding synonymous_variant LOW 1836T>C Gly612Gly
M0043640 LGJPBMKF_00130 143390 3 Skin 0.10 protein_coding missense_variant MODERATE 1805C>A Thr602Asn
M0043641 LGJPBMKF_00130 143391 3 Skin 0.10 protein_coding missense_variant MODERATE 1804A>T Thr602Ser
M0043642 LGJPBMKF_00130 144055 3 Skin 0.10 protein_coding synonymous_variant LOW 1140A>G Ala380Ala
M0043643 LGJPBMKF_00130 144247 3 Skin 0.10 protein_coding synonymous_variant LOW 948A>G Pro316Pro
M0043644 LGJPBMKF_00130 144658 3 Skin 0.10 protein_coding synonymous_variant LOW 537T>C Thr179Thr
M0043645 LGJPBMKF_00130 144898 4 Skin 0.13 protein_coding synonymous_variant LOW 297G>C Arg99Arg
M0043646 LGJPBMKF_00130 145033 4 Skin 0.13 protein_coding synonymous_variant LOW 162C>T Asn54Asn
M0043647 LGJPBMKF_00130 145116 5 Skin 0.16 protein_coding missense_variant MODERATE 79G>A Asp27Asn
M0043648 LGJPBMKF_00126 145306 4 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4578C>T None
M0043649 LGJPBMKF_00126 145323 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4595G>A None
M0043650 LGJPBMKF_00126 145330 4 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4602G>T None
M0043651 LGJPBMKF_00126 145331 4 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4603T>C None
M0043652 LGJPBMKF_00126 145332 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4604T>G None
M0043653 LGJPBMKF_00126 145386 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4658G>C None
M0043654 LGJPBMKF_00131 145899 4 Skin 0.13 protein_coding synonymous_variant LOW 441A>C Val147Val
M0043655 LGJPBMKF_00131 146247 5 Skin 0.16 protein_coding synonymous_variant LOW 789T>C Gly263Gly
M0043656 LGJPBMKF_00131 146367 4 Skin 0.13 protein_coding synonymous_variant LOW 909T>C Thr303Thr
M0043657 LGJPBMKF_00131 146400 3 Skin 0.10 protein_coding synonymous_variant LOW 942C>T Thr314Thr
M0043658 LGJPBMKF_00131 146457 4 Skin 0.13 protein_coding synonymous_variant LOW 999A>G Lys333Lys
M0043659 LGJPBMKF_00131 146514 5 Skin 0.16 protein_coding synonymous_variant LOW 1056T>C Ala352Ala
M0043660 LGJPBMKF_00130 146537 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -1343T>G None
M0043661 LGJPBMKF_00130 146539 5 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1345A>G None
M0043662 LGJPBMKF_00132 146786 4 Skin 0.13 protein_coding synonymous_variant LOW 126A>G Leu42Leu
M0043663 LGJPBMKF_00132 146864 3 Skin 0.10 protein_coding synonymous_variant LOW 204A>G Gln68Gln
M0043664 LGJPBMKF_00133 147384 4 Skin 0.13 protein_coding synonymous_variant LOW 1116T>A Gly372Gly
M0043665 LGJPBMKF_00015 15215 3 Skin 0.10 protein_coding missense_variant MODERATE 775A>G Thr259Ala
M0043666 LGJPBMKF_00015 15825 3 Skin 0.10 protein_coding synonymous_variant LOW 165G>C Thr55Thr
M0043667 LGJPBMKF_00016 16021 3 Skin 0.10 protein_coding synonymous_variant LOW 1116T>C His372His
M0043668 LGJPBMKF_00016 16141 3 Skin 0.10 protein_coding synonymous_variant LOW 996T>G Val332Val
M0043669 LGJPBMKF_00016 16738 4 Skin 0.13 protein_coding synonymous_variant LOW 399C>G Leu133Leu
M0043670 LGJPBMKF_00016 16936 4 Skin 0.13 protein_coding synonymous_variant LOW 201C>G Ser67Ser
M0043671 LGJPBMKF_00013 17220 4 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4691C>G None
M0043672 LGJPBMKF_00013 17325 4 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -4796C>T None
M0043673 LGJPBMKF_00017 17404 4 Skin 0.13 protein_coding missense_variant MODERATE 24G>T Met8Ile
M0043674 LGJPBMKF_00017 17423 4 Skin 0.13 protein_coding missense_variant MODERATE 43A>G Thr15Ala
M0043675 LGJPBMKF_00017 18486 3 Skin 0.10 protein_coding missense_variant MODERATE 1106G>A Arg369Lys
M0043676 LGJPBMKF_00017 18490 3 Skin 0.10 protein_coding synonymous_variant LOW 1110T>C Leu370Leu
M0043677 LGJPBMKF_00017 18565 3 Skin 0.10 protein_coding synonymous_variant LOW 1185C>T Arg395Arg
M0043678 LGJPBMKF_00017 18601 3 Skin 0.10 protein_coding synonymous_variant LOW 1221G>T Leu407Leu
M0043679 LGJPBMKF_00017 18679 3 Skin 0.10 protein_coding synonymous_variant LOW 1299T>C Tyr433Tyr
M0043680 LGJPBMKF_00017 18745 3 Skin 0.10 protein_coding synonymous_variant LOW 1365T>C Ile455Ile
M0043681 LGJPBMKF_00017 18898 3 Skin 0.10 protein_coding synonymous_variant LOW 1518G>A Pro506Pro
M0043682 LGJPBMKF_00014 18902 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4368T>G None
M0043683 LGJPBMKF_00014 18904 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4370T>G None
M0043684 LGJPBMKF_00018 19009 3 Skin 0.10 protein_coding synonymous_variant LOW 84G>A Arg28Arg
M0043685 LGJPBMKF_00018 19300 3 Skin 0.10 protein_coding synonymous_variant LOW 375C>T Asn125Asn
M0043686 LGJPBMKF_00018 19330 3 Skin 0.10 protein_coding synonymous_variant LOW 405A>G Val135Val
M0043687 LGJPBMKF_00018 19567 3 Skin 0.10 protein_coding synonymous_variant LOW 642A>G Ala214Ala
M0043688 LGJPBMKF_00019 20081 3 Skin 0.10 protein_coding synonymous_variant LOW 234T>C Ile78Ile
M0043689 LGJPBMKF_00064 72962 3 Skin 0.10 protein_coding synonymous_variant LOW 1084T>C Leu362Leu
M0043690 LGJPBMKF_00065 74002 3 Skin 0.10 protein_coding synonymous_variant LOW 903C>G Val301Val
M0043691 LGJPBMKF_00065 74029 3 Skin 0.10 protein_coding synonymous_variant LOW 930A>G Ala310Ala
M0043692 LGJPBMKF_00066 74421 3 Skin 0.10 protein_coding synonymous_variant LOW 306A>G Gln102Gln
M0043693 LGJPBMKF_00066 74691 3 Skin 0.10 protein_coding synonymous_variant LOW 576T>C Ile192Ile
M0043694 LGJPBMKF_00066 74787 3 Skin 0.10 protein_coding synonymous_variant LOW 672T>C Ser224Ser
M0043695 LGJPBMKF_00066 74898 3 Skin 0.10 protein_coding missense_variant MODERATE 783A>C Arg261Ser
M0043696 LGJPBMKF_00066 74979 3 Skin 0.10 protein_coding synonymous_variant LOW 864C>A Val288Val
M0043697 LGJPBMKF_00066 74989 3 Skin 0.10 protein_coding missense_variant MODERATE 874C>G Gln292Glu
M0043698 LGJPBMKF_00066 75087 3 Skin 0.10 protein_coding synonymous_variant LOW 972A>G Val324Val
M0043699 LGJPBMKF_00066 75356 3 Skin 0.10 protein_coding missense_variant MODERATE 1241A>C Gln414Pro
M0043700 LGJPBMKF_00076 87769 3 Skin 0.10 protein_coding synonymous_variant LOW 789A>G Gly263Gly
M0043701 LGJPBMKF_00077 88124 3 Skin 0.10 protein_coding synonymous_variant LOW 99T>C Phe33Phe
M0043702 LGJPBMKF_00077 88172 3 Skin 0.10 protein_coding synonymous_variant LOW 147T>C Gly49Gly
M0043703 LGJPBMKF_00077 88202 3 Skin 0.10 protein_coding synonymous_variant LOW 177C>A Arg59Arg
M0043704 LGJPBMKF_00077 88295 3 Skin 0.10 protein_coding synonymous_variant LOW 270C>A Ile90Ile
M0043705 LGJPBMKF_00077 88302 3 Skin 0.10 protein_coding synonymous_variant LOW 277T>C Leu93Leu
M0043706 LGJPBMKF_00077 88377 5 Skin 0.16 protein_coding missense_variant MODERATE 352G>A Ala118Thr
M0043707 LGJPBMKF_00078 88627 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -210C>T None
M0043708 LGJPBMKF_00078 88628 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -209A>G None
M0043709 LGJPBMKF_00078 88660 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -177A>G None
M0043710 LGJPBMKF_00078 88858 3 Skin 0.10 protein_coding missense_variant MODERATE 22G>A Ala8Thr
M0043711 LGJPBMKF_00078 88866 3 Skin 0.10 protein_coding synonymous_variant LOW 30C>T Pro10Pro
M0043712 LGJPBMKF_00078 88880 3 Skin 0.10 protein_coding missense_variant MODERATE 44T>C Val15Ala
M0043713 LGJPBMKF_00078 89046 3 Skin 0.10 protein_coding synonymous_variant LOW 210T>C Thr70Thr
M0043714 LGJPBMKF_00078 89199 3 Skin 0.10 protein_coding synonymous_variant LOW 363T>C Thr121Thr
M0043715 LGJPBMKF_00078 89455 3 Skin 0.10 protein_coding synonymous_variant LOW 619T>C Leu207Leu
M0043716 LGJPBMKF_00078 89724 3 Skin 0.10 protein_coding synonymous_variant LOW 888A>G Leu296Leu
M0043717 LGJPBMKF_00078 89913 3 Skin 0.10 protein_coding synonymous_variant LOW 1077A>G Gly359Gly
M0043718 LGJPBMKF_00078 90129 4 Skin 0.13 protein_coding synonymous_variant LOW 1293C>A Gly431Gly
M0043719 LGJPBMKF_00079 90262 4 Skin 0.13 protein_coding synonymous_variant LOW 24T>C Pro8Pro
M0043720 LGJPBMKF_00079 90574 4 Skin 0.13 protein_coding synonymous_variant LOW 336G>C Thr112Thr
M0043721 LGJPBMKF_00079 90640 4 Skin 0.13 protein_coding synonymous_variant LOW 402A>C Gly134Gly
M0043722 LGJPBMKF_00080 90721 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -96T>C None
M0043723 LGJPBMKF_00080 90746 4 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -71A>G None
M0043724 LGJPBMKF_00080 90812 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -5C>A None
M0043725 LGJPBMKF_00080 90982 4 Skin 0.13 protein_coding synonymous_variant LOW 166T>C Leu56Leu
M0043726 LGJPBMKF_00081 91454 3 Skin 0.10 protein_coding synonymous_variant LOW 339A>G Gln113Gln
M0043727 LGJPBMKF_00081 91481 3 Skin 0.10 protein_coding synonymous_variant LOW 366T>C Thr122Thr
M0043728 LGJPBMKF_00081 91646 4 Skin 0.13 protein_coding synonymous_variant LOW 531A>G Ala177Ala
M0043729 LGJPBMKF_00081 91658 3 Skin 0.10 protein_coding synonymous_variant LOW 543G>C Thr181Thr
M0043730 LGJPBMKF_00081 91730 3 Skin 0.10 protein_coding synonymous_variant LOW 615G>C Gly205Gly
M0043731 LGJPBMKF_00081 91748 4 Skin 0.13 protein_coding synonymous_variant LOW 633T>C Ala211Ala
M0043732 LGJPBMKF_00081 91754 4 Skin 0.13 protein_coding synonymous_variant LOW 639T>C Arg213Arg
M0043733 LGJPBMKF_00081 91808 4 Skin 0.13 protein_coding synonymous_variant LOW 693T>C Gly231Gly
M0043734 LGJPBMKF_00081 92159 3 Skin 0.10 protein_coding synonymous_variant LOW 1044T>C Asp348Asp
M0043735 LGJPBMKF_00082 92320 3 Skin 0.10 protein_coding missense_variant MODERATE 250A>T Thr84Ser
M0043736 LGJPBMKF_00082 92390 3 Skin 0.10 protein_coding synonymous_variant LOW 180C>T Cys60Cys
M0043737 LGJPBMKF_00084 93115 3 Skin 0.10 protein_coding synonymous_variant LOW 2316C>T Arg772Arg
M0043738 LGJPBMKF_00084 93127 5 Skin 0.16 protein_coding synonymous_variant LOW 2304T>C Ala768Ala
M0043739 LGJPBMKF_00084 93424 3 Skin 0.10 protein_coding synonymous_variant LOW 2007T>C Val669Val
M0043740 LGJPBMKF_00084 93487 3 Skin 0.10 protein_coding synonymous_variant LOW 1944A>G Glu648Glu
M0043741 LGJPBMKF_00084 93496 3 Skin 0.10 protein_coding synonymous_variant LOW 1935G>A Ala645Ala
M0043742 LGJPBMKF_00084 93523 3 Skin 0.10 protein_coding synonymous_variant LOW 1908G>A Val636Val
M0043743 LGJPBMKF_00084 93841 3 Skin 0.10 protein_coding synonymous_variant LOW 1590G>A Gln530Gln
M0043744 LGJPBMKF_00084 94072 4 Skin 0.13 protein_coding synonymous_variant LOW 1359T>C Arg453Arg
M0043745 LGJPBMKF_00084 94225 3 Skin 0.10 protein_coding synonymous_variant LOW 1206T>C Val402Val
M0043746 LGJPBMKF_00084 94252 3 Skin 0.10 protein_coding synonymous_variant LOW 1179A>G Gln393Gln
M0043747 LGJPBMKF_00084 94285 3 Skin 0.10 protein_coding synonymous_variant LOW 1146C>T Asn382Asn
M0043748 LGJPBMKF_00084 94345 3 Skin 0.10 protein_coding synonymous_variant LOW 1086T>C Gly362Gly
M0043749 LGJPBMKF_00084 94540 3 Skin 0.10 protein_coding synonymous_variant LOW 891C>T Arg297Arg
M0043750 LGJPBMKF_00084 94600 3 Skin 0.10 protein_coding synonymous_variant LOW 831G>T Val277Val
M0043751 LGJPBMKF_00084 94756 3 Skin 0.10 protein_coding synonymous_variant LOW 675G>T Thr225Thr
M0043752 LGJPBMKF_00084 94972 4 Skin 0.13 protein_coding synonymous_variant LOW 459G>C Ala153Ala
M0043753 LGJPBMKF_00084 94974 4 Skin 0.13 protein_coding missense_variant MODERATE 457G>C Ala153Pro
M0043754 LGJPBMKF_00084 95005 3 Skin 0.10 protein_coding synonymous_variant LOW 426T>C Phe142Phe
M0043755 LGJPBMKF_00084 95020 3 Skin 0.10 protein_coding synonymous_variant LOW 411T>C Ser137Ser
M0043756 LGJPBMKF_00084 95077 3 Skin 0.10 protein_coding synonymous_variant LOW 354A>C Ala118Ala
M0043757 LGJPBMKF_00082 95510 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2941C>T None
M0043758 LGJPBMKF_00082 95527 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2958A>C None
M0043759 LGJPBMKF_00085 95787 3 Skin 0.10 protein_coding synonymous_variant LOW 868C>T Leu290Leu
M0043760 LGJPBMKF_00085 95986 3 Skin 0.10 protein_coding synonymous_variant LOW 669T>C Gly223Gly
M0043761 LGJPBMKF_00085 96028 3 Skin 0.10 protein_coding synonymous_variant LOW 627A>C Thr209Thr
M0043762 LGJPBMKF_00085 96037 3 Skin 0.10 protein_coding synonymous_variant LOW 618G>A Pro206Pro
M0043763 LGJPBMKF_00085 96121 3 Skin 0.10 protein_coding synonymous_variant LOW 534G>A Lys178Lys
M0043764 LGJPBMKF_00085 96178 4 Skin 0.13 protein_coding synonymous_variant LOW 477T>C Ser159Ser
M0043765 LGJPBMKF_00085 96190 4 Skin 0.13 protein_coding synonymous_variant LOW 465C>T Ile155Ile
M0043766 LGJPBMKF_00085 96217 3 Skin 0.10 protein_coding synonymous_variant LOW 438A>G Leu146Leu
M0043767 LGJPBMKF_00085 96307 3 Skin 0.10 protein_coding synonymous_variant LOW 348A>G Leu116Leu
M0043768 LGJPBMKF_00085 96322 3 Skin 0.10 protein_coding synonymous_variant LOW 333G>A Ala111Ala
M0043769 LGJPBMKF_00085 96346 3 Skin 0.10 protein_coding synonymous_variant LOW 309G>A Val103Val
M0043770 LGJPBMKF_00085 96418 3 Skin 0.10 protein_coding synonymous_variant LOW 237T>C Val79Val
M0043771 LGJPBMKF_00085 96424 3 Skin 0.10 protein_coding synonymous_variant LOW 231C>T His77His
M0043772 LGJPBMKF_00085 96487 3 Skin 0.10 protein_coding synonymous_variant LOW 168T>G Arg56Arg
M0043773 LGJPBMKF_00085 96508 3 Skin 0.10 protein_coding synonymous_variant LOW 147G>T Leu49Leu
M0043774 LGJPBMKF_00085 96520 3 Skin 0.10 protein_coding synonymous_variant LOW 135G>C Thr45Thr
M0043775 LGJPBMKF_00082 96803 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4234A>T None
M0043776 LGJPBMKF_00082 96806 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4237T>C None
M0043777 LGJPBMKF_00082 96817 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4248C>T None
M0043778 LGJPBMKF_00086 96962 3 Skin 0.10 protein_coding synonymous_variant LOW 490T>C Leu164Leu
M0043779 LGJPBMKF_00086 96990 3 Skin 0.10 protein_coding synonymous_variant LOW 462G>A Glu154Glu
M0043780 LGJPBMKF_00086 96999 3 Skin 0.10 protein_coding synonymous_variant LOW 453T>C Phe151Phe
M0043781 LGJPBMKF_00086 97155 3 Skin 0.10 protein_coding synonymous_variant LOW 297G>C Gly99Gly
M0043782 LGJPBMKF_00086 97188 3 Skin 0.10 protein_coding synonymous_variant LOW 264T>C Ser88Ser
M0043783 LGJPBMKF_00086 97197 3 Skin 0.10 protein_coding synonymous_variant LOW 255T>C Arg85Arg
M0043784 LGJPBMKF_00086 97293 3 Skin 0.10 protein_coding synonymous_variant LOW 159C>A Gly53Gly
M0043785 LGJPBMKF_00086 97347 3 Skin 0.10 protein_coding synonymous_variant LOW 105C>T Phe35Phe
M0043786 LGJPBMKF_00086 97359 3 Skin 0.10 protein_coding synonymous_variant LOW 93C>T Phe31Phe
M0043787 LGJPBMKF_00086 97407 3 Skin 0.10 protein_coding synonymous_variant LOW 45T>C Pro15Pro
M0043788 LGJPBMKF_00087 97493 3 Skin 0.10 protein_coding synonymous_variant LOW 696T>C His232His
M0043789 LGJPBMKF_00087 97511 4 Skin 0.13 protein_coding synonymous_variant LOW 678T>C Asp226Asp
M0043790 LGJPBMKF_00087 97529 3 Skin 0.10 protein_coding synonymous_variant LOW 660C>T Ser220Ser
M0043791 LGJPBMKF_00087 97712 3 Skin 0.10 protein_coding synonymous_variant LOW 477C>A Arg159Arg
M0043792 LGJPBMKF_00087 97760 3 Skin 0.10 protein_coding synonymous_variant LOW 429A>G Thr143Thr
M0043793 LGJPBMKF_00087 97796 3 Skin 0.10 protein_coding synonymous_variant LOW 393G>A Val131Val
M0043794 LGJPBMKF_00087 97805 3 Skin 0.10 protein_coding synonymous_variant LOW 384T>C Cys128Cys
M0043795 LGJPBMKF_00087 97832 4 Skin 0.13 protein_coding synonymous_variant LOW 357A>G Ala119Ala
M0043796 LGJPBMKF_00087 97862 3 Skin 0.10 protein_coding synonymous_variant LOW 327C>T Arg109Arg
M0043797 LGJPBMKF_00087 97892 4 Skin 0.13 protein_coding synonymous_variant LOW 297G>C Val99Val
M0043798 LGJPBMKF_00087 97913 4 Skin 0.13 protein_coding synonymous_variant LOW 276A>G Arg92Arg
M0043799 LGJPBMKF_00087 97943 4 Skin 0.13 protein_coding synonymous_variant LOW 246T>C Val82Val
M0043800 LGJPBMKF_00087 97946 4 Skin 0.13 protein_coding synonymous_variant LOW 243T>C Ile81Ile
M0043801 LGJPBMKF_00087 97955 4 Skin 0.13 protein_coding synonymous_variant LOW 234G>A Glu78Glu
M0043802 LGJPBMKF_00087 97991 4 Skin 0.13 protein_coding synonymous_variant LOW 198C>T Ile66Ile
M0043803 LGJPBMKF_00087 98039 3 Skin 0.10 protein_coding synonymous_variant LOW 150T>C Gly50Gly
M0043804 LGJPBMKF_00087 98048 3 Skin 0.10 protein_coding synonymous_variant LOW 141A>G Glu47Glu
M0043805 LGJPBMKF_00087 98078 3 Skin 0.10 protein_coding synonymous_variant LOW 111C>G Ala37Ala
M0043806 LGJPBMKF_00087 98084 3 Skin 0.10 protein_coding synonymous_variant LOW 105T>C Arg35Arg
M0043807 LGJPBMKF_00087 98096 3 Skin 0.10 protein_coding synonymous_variant LOW 93G>A Leu31Leu
M0043808 LGJPBMKF_00087 98102 3 Skin 0.10 protein_coding synonymous_variant LOW 87T>C Ser29Ser
M0043809 LGJPBMKF_00087 98105 3 Skin 0.10 protein_coding synonymous_variant LOW 84T>C Thr28Thr
M0043810 LGJPBMKF_00087 98111 3 Skin 0.10 protein_coding synonymous_variant LOW 78T>C Tyr26Tyr
M0043811 LGJPBMKF_00087 98159 3 Skin 0.10 protein_coding synonymous_variant LOW 30T>C Val10Val
M0043812 LGJPBMKF_00084 98201 5 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -2771A>G None
M0043813 LGJPBMKF_00084 98204 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2774A>T None
M0043814 LGJPBMKF_00084 98230 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2800C>A None
M0043815 LGJPBMKF_00084 98256 5 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -2826G>A None
M0043816 LGJPBMKF_00084 98288 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2858G>A None
M0043817 LGJPBMKF_00084 98300 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2870A>C None
M0043818 LGJPBMKF_00084 98301 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2871A>G None
M0043819 LGJPBMKF_00084 98315 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2885C>T None
M0043820 LGJPBMKF_00088 98460 4 Skin 0.13 protein_coding synonymous_variant LOW 36G>A Glu12Glu
M0043821 LGJPBMKF_00088 98508 3 Skin 0.10 protein_coding synonymous_variant LOW 84A>G Gln28Gln
M0043822 LGJPBMKF_00088 98562 3 Skin 0.10 protein_coding synonymous_variant LOW 138T>C His46His
M0043823 LGJPBMKF_00088 98601 3 Skin 0.10 protein_coding synonymous_variant LOW 177G>A Glu59Glu
M0043824 LGJPBMKF_00088 98739 3 Skin 0.10 protein_coding synonymous_variant LOW 315G>C Pro105Pro
M0043825 LGJPBMKF_00088 98742 3 Skin 0.10 protein_coding synonymous_variant LOW 318T>G Val106Val
M0043826 LGJPBMKF_00088 98745 3 Skin 0.10 protein_coding synonymous_variant LOW 321C>T His107His
M0043827 LGJPBMKF_00088 98748 3 Skin 0.10 protein_coding synonymous_variant LOW 324C>T Ser108Ser
M0043828 LGJPBMKF_00088 98754 3 Skin 0.10 protein_coding synonymous_variant LOW 330A>T Ala110Ala
M0043829 LGJPBMKF_00088 99078 4 Skin 0.13 protein_coding synonymous_variant LOW 654T>C Pro218Pro
M0043830 LGJPBMKF_00088 99114 3 Skin 0.10 protein_coding synonymous_variant LOW 690T>C Leu230Leu
M0043831 LGJPBMKF_00088 99339 4 Skin 0.13 protein_coding synonymous_variant LOW 915C>G Leu305Leu
M0043832 LGJPBMKF_00089 99837 3 Skin 0.10 protein_coding synonymous_variant LOW 27A>G Val9Val
M0043833 LGJPBMKF_00089 99868 3 Skin 0.10 protein_coding missense_variant MODERATE 58C>A Arg20Ser
M0043834 LGJPBMKF_00089 99903 3 Skin 0.10 protein_coding synonymous_variant LOW 93T>C Pro31Pro
M0043835 LGJPBMKF_00089 99921 3 Skin 0.10 protein_coding synonymous_variant LOW 111G>T Val37Val
M0043836 LGJPBMKF_00089 99942 3 Skin 0.10 protein_coding synonymous_variant LOW 132C>G Ser44Ser
M0043837 LGJPBMKF_00089 100101 3 Skin 0.10 protein_coding synonymous_variant LOW 291T>C Arg97Arg
M0043838 LGJPBMKF_00089 100284 4 Skin 0.13 protein_coding synonymous_variant LOW 474A>G Glu158Glu
M0043839 LGJPBMKF_00089 100689 3 Skin 0.10 protein_coding synonymous_variant LOW 879C>A Gly293Gly
M0043840 LGJPBMKF_00089 101079 3 Skin 0.10 protein_coding synonymous_variant LOW 1269A>G Glu423Glu
M0043841 LGJPBMKF_00089 101133 3 Skin 0.10 protein_coding synonymous_variant LOW 1323T>G Arg441Arg
M0043842 LGJPBMKF_00089 101172 3 Skin 0.10 protein_coding synonymous_variant LOW 1362G>A Val454Val
M0043843 LGJPBMKF_00090 101606 3 Skin 0.10 protein_coding synonymous_variant LOW 549A>G Thr183Thr
M0043844 LGJPBMKF_00091 102572 3 Skin 0.10 protein_coding synonymous_variant LOW 246A>C Ile82Ile
M0043845 LGJPBMKF_00087 102999 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4811T>C None
M0043846 LGJPBMKF_00092 103013 3 Skin 0.10 protein_coding synonymous_variant LOW 1335A>G Ser445Ser
M0043847 LGJPBMKF_00092 103038 3 Skin 0.10 protein_coding missense_variant MODERATE 1310A>G Asn437Ser
M0043848 LGJPBMKF_00092 103646 3 Skin 0.10 protein_coding synonymous_variant LOW 702A>G Leu234Leu
M0043849 LGJPBMKF_00092 103661 3 Skin 0.10 protein_coding synonymous_variant LOW 687C>T Tyr229Tyr
M0043850 LGJPBMKF_00092 103727 3 Skin 0.10 protein_coding synonymous_variant LOW 621T>C Ser207Ser
M0043851 LGJPBMKF_00092 103778 3 Skin 0.10 protein_coding synonymous_variant LOW 570A>G Ala190Ala
M0043852 LGJPBMKF_00092 103799 3 Skin 0.10 protein_coding synonymous_variant LOW 549C>T Phe183Phe
M0043853 LGJPBMKF_00092 103802 3 Skin 0.10 protein_coding synonymous_variant LOW 546T>C Ile182Ile
M0043854 LGJPBMKF_00092 104066 3 Skin 0.10 protein_coding synonymous_variant LOW 282T>C Ser94Ser
M0043855 LGJPBMKF_00090 104438 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -2284T>G None
M0043856 LGJPBMKF_00093 105610 3 Skin 0.10 protein_coding synonymous_variant LOW 975C>T Asp325Asp
M0043857 LGJPBMKF_00094 106191 3 Skin 0.10 protein_coding missense_variant MODERATE 375G>T Glu125Asp
M0043858 LGJPBMKF_00094 106308 3 Skin 0.10 protein_coding synonymous_variant LOW 492A>G Ala164Ala
M0043859 LGJPBMKF_00092 107843 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -3496T>C None
M0043860 LGJPBMKF_00096 108235 3 Skin 0.10 protein_coding missense_variant MODERATE 193C>G Pro65Ala
M0043861 LGJPBMKF_00096 108279 3 Skin 0.10 protein_coding synonymous_variant LOW 237A>G Gln79Gln
M0043862 LGJPBMKF_00096 108510 3 Skin 0.10 protein_coding synonymous_variant LOW 468T>C Leu156Leu
M0043863 LGJPBMKF_00096 109038 3 Skin 0.10 protein_coding missense_variant MODERATE 996T>A Asn332Lys
M0043864 LGJPBMKF_00096 109255 3 Skin 0.10 protein_coding missense_variant MODERATE 1213G>C Glu405Gln
M0043865 LGJPBMKF_00096 109356 3 Skin 0.10 protein_coding synonymous_variant LOW 1314T>G Pro438Pro
M0043866 LGJPBMKF_00096 109371 3 Skin 0.10 protein_coding synonymous_variant LOW 1329A>G Pro443Pro
M0043867 LGJPBMKF_00096 109404 3 Skin 0.10 protein_coding synonymous_variant LOW 1362A>C Arg454Arg
M0043868 LGJPBMKF_00096 109578 3 Skin 0.10 protein_coding synonymous_variant LOW 1536A>G Pro512Pro
M0043869 LGJPBMKF_00095 109705 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -1985G>A None
M0043870 LGJPBMKF_00095 109709 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -1989G>A None
M0043871 LGJPBMKF_00095 109711 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -1991G>T None
M0043872 LGJPBMKF_00097 109774 3 Skin 0.10 protein_coding missense_variant MODERATE 8G>C Gly3Ala
M0043873 LGJPBMKF_00097 109884 3 Skin 0.10 protein_coding missense_variant MODERATE 118A>G Asn40Asp
M0043874 LGJPBMKF_00097 109886 3 Skin 0.10 protein_coding synonymous_variant LOW 120T>C Asn40Asn
M0043875 LGJPBMKF_00097 110048 3 Skin 0.10 protein_coding synonymous_variant LOW 282A>T Ile94Ile
M0043876 LGJPBMKF_00097 110054 3 Skin 0.10 protein_coding synonymous_variant LOW 288A>G Pro96Pro
M0043877 LGJPBMKF_00097 110060 3 Skin 0.10 protein_coding synonymous_variant LOW 294T>C Asn98Asn
M0043878 LGJPBMKF_00097 110135 3 Skin 0.10 protein_coding synonymous_variant LOW 369A>G Ala123Ala
M0043879 LGJPBMKF_00097 110180 3 Skin 0.10 protein_coding synonymous_variant LOW 414G>T Val138Val
M0043880 LGJPBMKF_00099 112351 3 Skin 0.10 protein_coding missense_variant MODERATE 928C>T Leu310Phe
M0043881 LGJPBMKF_00100 112472 3 Skin 0.10 protein_coding synonymous_variant LOW 48A>G Thr16Thr
M0043882 LGJPBMKF_00101 113039 3 Skin 0.10 protein_coding synonymous_variant LOW 1209C>G Leu403Leu
M0043883 LGJPBMKF_00101 113042 3 Skin 0.10 protein_coding synonymous_variant LOW 1206A>G Gln402Gln
M0043884 LGJPBMKF_00101 113900 3 Skin 0.10 protein_coding synonymous_variant LOW 348A>G Leu116Leu
M0043885 LGJPBMKF_00101 114059 3 Skin 0.10 protein_coding synonymous_variant LOW 189C>G Val63Val
M0043886 LGJPBMKF_00101 114126 3 Skin 0.10 protein_coding missense_variant MODERATE 122G>A Arg41Gln
M0043887 LGJPBMKF_00102 114765 3 Skin 0.10 protein_coding missense_variant MODERATE 406G>T Ala136Ser
M0043888 LGJPBMKF_00106 119371 3 Skin 0.10 protein_coding missense_variant MODERATE 524T>C Val175Ala
M0043889 LGJPBMKF_00108 121058 4 Skin 0.13 protein_coding synonymous_variant LOW 291T>C Ile97Ile
M0043890 LGJPBMKF_00108 121097 4 Skin 0.13 protein_coding synonymous_variant LOW 330A>G Pro110Pro
M0043891 LGJPBMKF_00108 121166 4 Skin 0.13 protein_coding synonymous_variant LOW 399A>G Ala133Ala
M0043892 LGJPBMKF_00108 121289 4 Skin 0.13 protein_coding synonymous_variant LOW 522C>T Gly174Gly
M0043893 LGJPBMKF_00108 121319 4 Skin 0.13 protein_coding synonymous_variant LOW 552G>A Gly184Gly
M0043894 LGJPBMKF_00108 121487 3 Skin 0.10 protein_coding synonymous_variant LOW 720A>G Lys240Lys
M0043895 LGJPBMKF_00108 122216 3 Skin 0.10 protein_coding synonymous_variant LOW 1449T>A Val483Val
M0043896 LGJPBMKF_00128 142371 3 Skin 0.10 protein_coding synonymous_variant LOW 843T>C Gly281Gly
M0043897 LGJPBMKF_00128 142395 3 Skin 0.10 protein_coding synonymous_variant LOW 867G>C Gly289Gly
M0043898 LGJPBMKF_00130 145016 3 Skin 0.10 protein_coding missense_variant MODERATE 179T>A Leu60Gln
M0043899 LGJPBMKF_00131 145935 3 Skin 0.10 protein_coding synonymous_variant LOW 477T>G Gly159Gly
M0043900 LGJPBMKF_00131 146025 3 Skin 0.10 protein_coding synonymous_variant LOW 567A>G Gly189Gly
M0043901 LGJPBMKF_00071 82211 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -871C>T None
M0043902 LGJPBMKF_00071 82560 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -1220C>T None
M0043903 LGJPBMKF_00071 82567 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -1227A>C None
M0043904 LGJPBMKF_00073 83026 3 Skin 0.10 protein_coding missense_variant MODERATE 410C>T Ala137Val
M0043905 LGJPBMKF_00073 83120 3 Skin 0.10 protein_coding synonymous_variant LOW 504A>T Val168Val
M0043906 LGJPBMKF_00074 83694 3 Skin 0.10 protein_coding missense_variant MODERATE 361T>C Cys121Arg
M0043907 LGJPBMKF_00074 83712 3 Skin 0.10 protein_coding missense_variant MODERATE 379A>G Thr127Ala
M0043908 LGJPBMKF_00074 83813 3 Skin 0.10 protein_coding synonymous_variant LOW 480C>T Arg160Arg
M0043909 LGJPBMKF_00074 83891 3 Skin 0.10 protein_coding synonymous_variant LOW 558A>G Lys186Lys
M0043910 LGJPBMKF_00074 83945 3 Skin 0.10 protein_coding synonymous_variant LOW 612T>C Leu204Leu
M0043911 LGJPBMKF_00074 84376 3 Skin 0.10 protein_coding missense_variant MODERATE 1043A>T Lys348Met
M0043912 LGJPBMKF_00086 97119 3 Skin 0.10 protein_coding synonymous_variant LOW 333C>T Arg111Arg
M0043913 LGJPBMKF_00088 99390 3 Skin 0.10 protein_coding synonymous_variant LOW 966T>C His322His
M0043914 LGJPBMKF_00016 16966 3 Skin 0.10 protein_coding synonymous_variant LOW 171C>A Gly57Gly
M0043915 LGJPBMKF_00016 17059 3 Skin 0.10 protein_coding synonymous_variant LOW 78C>T Arg26Arg
M0043916 LGJPBMKF_00013 17197 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4668C>G None
M0043917 LGJPBMKF_00013 17297 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4768C>T None
M0043918 LGJPBMKF_00013 17327 3 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4798G>T None
M0043919 LGJPBMKF_00017 17428 3 Skin 0.10 protein_coding synonymous_variant LOW 48C>T Gly16Gly
M0043920 LGJPBMKF_00017 17452 3 Skin 0.10 protein_coding synonymous_variant LOW 72A>G Ala24Ala
M0043921 LGJPBMKF_00133 147147 3 Skin 0.10 protein_coding synonymous_variant LOW 1353A>C Val451Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
LGJPBMKF_00003 VFG048632 T6SS 85.9 6.3e-75 1 163 1.0 1 Effector delivery system type VI secretion system contractile sheath small subunit VipA experiment
LGJPBMKF_00004 VFG048643 T6SS 91.2 1.6e-278 1 510 0.998 0.9922 Effector delivery system type VI secretion system contractile sheath large subunit VipB experiment
LGJPBMKF_00005 VFG048687 T6SS 97.5 1.5e-92 1 163 1.0 1 Effector delivery system type VI secretion system protein, Hcp family experiment
LGJPBMKF_00006 VFG048697 T6SS 81.1 0 1 876 0.9854 0.991 Effector delivery system type VI secretion system ATPase TssH experiment
LGJPBMKF_00003 VFG048624 T6SS 85.9 1.2e-74 1 163 1.0 1 Effector delivery system type VI secretion system contractile sheath small subunit VipA prediction
LGJPBMKF_00004 VFG048635 T6SS 94.7 9.9e-288 1 510 0.998 1 Effector delivery system type VI secretion system contractile sheath large subunit VipB prediction
LGJPBMKF_00005 VFG048687 T6SS 97.5 1.1e-91 1 163 1.0 1 Effector delivery system type VI secretion system protein, Hcp family prediction
LGJPBMKF_00006 VFG048699 T6SS 81.2 0 1 876 0.9854 0.991 Effector delivery system type VI secretion system ATPase TssH prediction
LGJPBMKF_00008 VFG049295 T6SS-III 81.6 1.5e-66 1 147 1.0 1 Effector delivery system type VI secretion system baseplate subunit TssE prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
LGJPBMKF_00099 Tellurium (Te), Proflavin [class: Acridine], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Crystal Violet [class: Triarylmethane], Dequalinium [class: Quaternary Ammonium Compounds (QACs)], Methyl Viologen [class: Paraquat] 77.8 3.5e-144 9 332 0.9759 0.9818 experiment
LGJPBMKF_00100 Tellurium (Te), Proflavin [class: Acridine] 78.6 6.5e-90 1 196 0.9899 0.9949 experiment
LGJPBMKF_00028 Hydrogen Peroxide (H2O2) [class: Peroxides], Carbonyl cyanide 3-chlorophenylhydrazone (CCCP) [class: Hydrazone], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides], Sodium Nitrite (NaNo2) [class: Nitrites] 71.3 4.2e-147 1 380 1.0000 1.0468 prediction
LGJPBMKF_00099 Tellurium (Te), Proflavin [class: Acridine], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Crystal Violet [class: Triarylmethane], Dequalinium [class: Quaternary Ammonium Compounds (QACs)], Methyl Viologen [class: Paraquat] 79.2 1.9e-148 1 332 1.0000 0.9970 prediction
LGJPBMKF_00100 Tellurium (Te), Proflavin [class: Acridine] 85.2 3.5e-97 3 198 0.9899 0.9949 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
LGJPBMKF_00028 ARO:3004122 82.4 6.86e-229 1 380 1.0000 1.0160 monobactam General Bacterial Porin with reduced permeability to beta-lactams reduced permeability to antibiotic






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
LGJPBMKF_00003 PHI:7080 tssB-2 71.8 1e-63 1 163 1.0000 0.9879 eudicots fire blight T6SS-3 component reduced virulence
LGJPBMKF_00004 PHI:7081 tssC-2 82.7 5.1e-255 1 510 0.9980 0.9942 eudicots fire blight T6SS-3 component reduced virulence
LGJPBMKF_00005 PHI:7108 hcp-2 81.6 9.3e-78 1 163 1.0000 1.0000 eudicots fire blight T6SS effector protein effector (plant avirulence determinant)
LGJPBMKF_00006 PHI:7094 clpV-2 72.9 0 5 875 0.9798 0.9853 eudicots fire blight T6SS-3 component reduced virulence
LGJPBMKF_00008 PHI:7082 tssE-2 77.1 1e-59 4 147 0.9796 0.9600 eudicots fire blight T6SS-3 component reduced virulence
LGJPBMKF_00096 PHI:10993 mdoD 85.3 2.3e-298 1 550 0.9982 0.9982 rodents infection glucans biosynthesis protein D unaffected pathogenicity
LGJPBMKF_00113 PHI:7225 ydcR 84.2 2.4e-227 1 469 0.9979 0.9873 rodents salmonellosis putative transcriptional regulator reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
LGJPBMKF_00029 AMJ18631.1|GT2 91.1 0 1 1174 0.9991 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
LGJPBMKF_00021 1.A.35.4.1 85.9 1.2e-169 1 327 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.35 The CorA Metal Ion Transporter (MIT) Family
LGJPBMKF_00028 1.B.1.1.32 83.7 2.7e-184 1 380 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.1 The General Bacterial Porin (GBP) Family
LGJPBMKF_00075 3.A.1.112.13 75.4 2.4e-245 1 565 0.9930 0.8095 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
LGJPBMKF_00078 2.A.1.14.9 73.7 3.5e-194 1 460 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
LGJPBMKF_00099 2.A.16.1.1 77.8 1.3e-142 9 332 0.9759 0.9818 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.16 The Telurite-resistance/Dicarboxylate Transporter (TDT) Family
LGJPBMKF_00106 2.A.46.1.9 70.8 8e-144 1 385 0.9923 0.9847 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.46 The Benzoate:H+ Symporter (BenE) Family
LGJPBMKF_00114 3.A.1.11.9 89 2e-211 1 381 1.0000 1.1306 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
LGJPBMKF_00115 3.A.1.11.9 81.1 5.2e-155 1 333 0.9881 0.9881 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
LGJPBMKF_00116 3.A.1.11.9 88.4 1e-149 7 309 0.9806 0.8991 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
LGJPBMKF_00117 3.A.1.11.9 88.5 8.6e-129 1 261 0.9739 0.7745 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
LGJPBMKF_00125 2.A.7.21.2 79.9 4.7e-60 1 149 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.7 The Drug/Metabolite Transporter (DMT) Superfamily
LGJPBMKF_00130 1.B.14.9.5 78.7 0 1 703 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.14 The Outer Membrane Receptor (OMR) Family
LGJPBMKF_00133 2.A.3.1.8 91.9 9.5e-257 37 516 0.9213 0.9658 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family