Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2524
  Reference Plasmid   1111525849772552_bin.4__k141_39347
  Reference Plasmid Size   36511
  Reference Plasmid GC Content   0.57
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0045399 PFEBBJDI_00001 175 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -482C>T None
M0045400 PFEBBJDI_00001 905 5 Skin 0.63 protein_coding synonymous_variant LOW 249A>C Gly83Gly
M0045401 PFEBBJDI_00001 980 5 Skin 0.63 protein_coding synonymous_variant LOW 324A>C Ala108Ala
M0045402 PFEBBJDI_00001 1013 5 Skin 0.63 protein_coding synonymous_variant LOW 357A>G Leu119Leu
M0045403 PFEBBJDI_00002 1535 5 Skin 0.63 protein_coding synonymous_variant LOW 831T>C Ile277Ile
M0045404 PFEBBJDI_00002 1541 5 Skin 0.63 protein_coding synonymous_variant LOW 825A>G Val275Val
M0045405 PFEBBJDI_00002 1577 5 Skin 0.63 protein_coding synonymous_variant LOW 789A>G Pro263Pro
M0045406 PFEBBJDI_00002 1595 5 Skin 0.63 protein_coding synonymous_variant LOW 771C>G Ser257Ser
M0045407 PFEBBJDI_00002 1601 4 Skin 0.50 protein_coding synonymous_variant LOW 765G>A Lys255Lys
M0045408 PFEBBJDI_00002 1631 4 Skin 0.50 protein_coding synonymous_variant LOW 735C>T Ser245Ser
M0045409 PFEBBJDI_00002 1637 5 Skin 0.63 protein_coding synonymous_variant LOW 729T>C Asp243Asp
M0045410 PFEBBJDI_00002 1775 3 Skin 0.38 protein_coding synonymous_variant LOW 591G>A Gly197Gly
M0045411 PFEBBJDI_00002 1829 4 Skin 0.50 protein_coding synonymous_variant LOW 537A>G Pro179Pro
M0045412 PFEBBJDI_00002 1958 5 Skin 0.63 protein_coding synonymous_variant LOW 408G>C Gly136Gly
M0045413 PFEBBJDI_00003 2564 4 Skin 0.50 protein_coding synonymous_variant LOW 831A>C Ile277Ile
M0045414 PFEBBJDI_00003 2624 5 Skin 0.63 protein_coding synonymous_variant LOW 771T>C Gly257Gly
M0045415 PFEBBJDI_00003 2795 4 Skin 0.50 protein_coding synonymous_variant LOW 600T>C Leu200Leu
M0045416 PFEBBJDI_00003 2825 5 Skin 0.63 protein_coding synonymous_variant LOW 570A>G Val190Val
M0045417 PFEBBJDI_00003 3125 5 Skin 0.63 protein_coding synonymous_variant LOW 270T>C Gly90Gly
M0045418 PFEBBJDI_00004 3508 5 Skin 0.63 protein_coding synonymous_variant LOW 1404T>C Tyr468Tyr
M0045419 PFEBBJDI_00004 3865 5 Skin 0.63 protein_coding synonymous_variant LOW 1047A>G Ala349Ala
M0045420 PFEBBJDI_00004 3931 5 Skin 0.63 protein_coding synonymous_variant LOW 981T>G Ala327Ala
M0045421 PFEBBJDI_00004 3986 3 Skin 0.38 protein_coding missense_variant MODERATE 926C>G Ala309Gly
M0045422 PFEBBJDI_00004 3988 3 Skin 0.38 protein_coding synonymous_variant LOW 924C>G Thr308Thr
M0045423 PFEBBJDI_00004 3991 3 Skin 0.38 protein_coding synonymous_variant LOW 921C>G Ala307Ala
M0045424 PFEBBJDI_00004 4015 3 Skin 0.38 protein_coding synonymous_variant LOW 897G>A Gln299Gln
M0045425 PFEBBJDI_00004 4024 4 Skin 0.50 protein_coding synonymous_variant LOW 888A>G Glu296Glu
M0045426 PFEBBJDI_00004 4300 3 Skin 0.38 protein_coding synonymous_variant LOW 612A>G Glu204Glu
M0045427 PFEBBJDI_00004 4378 5 Skin 0.63 protein_coding synonymous_variant LOW 534T>G Thr178Thr
M0045428 PFEBBJDI_00004 4384 3 Skin 0.38 protein_coding synonymous_variant LOW 528A>G Arg176Arg
M0045429 PFEBBJDI_00004 4485 3 Skin 0.38 protein_coding synonymous_variant LOW 427C>T Leu143Leu
M0045430 PFEBBJDI_00004 4581 3 Skin 0.38 protein_coding missense_variant MODERATE 331G>A Gly111Ser
M0045431 PFEBBJDI_00004 4603 5 Skin 0.63 protein_coding synonymous_variant LOW 309T>C Phe103Phe
M0045432 PFEBBJDI_00004 4663 3 Skin 0.38 protein_coding synonymous_variant LOW 249C>T Ile83Ile
M0045433 PFEBBJDI_00004 4705 3 Skin 0.38 protein_coding synonymous_variant LOW 207G>A Pro69Pro
M0045434 PFEBBJDI_00002 5034 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -2669T>C None
M0045435 PFEBBJDI_00005 5310 3 Skin 0.38 protein_coding synonymous_variant LOW 210C>T Ala70Ala
M0045436 PFEBBJDI_00005 5433 4 Skin 0.50 protein_coding synonymous_variant LOW 333A>G Leu111Leu
M0045437 PFEBBJDI_00005 5472 3 Skin 0.38 protein_coding synonymous_variant LOW 372C>T Arg124Arg
M0045438 PFEBBJDI_00005 5496 4 Skin 0.50 protein_coding synonymous_variant LOW 396C>T Ser132Ser
M0045439 PFEBBJDI_00005 6120 3 Skin 0.38 protein_coding synonymous_variant LOW 1020T>G Val340Val
M0045440 PFEBBJDI_00005 6183 3 Skin 0.38 protein_coding synonymous_variant LOW 1083T>C Arg361Arg
M0045441 PFEBBJDI_00005 6333 3 Skin 0.38 protein_coding synonymous_variant LOW 1233G>C Ala411Ala
M0045442 PFEBBJDI_00005 6582 4 Skin 0.50 protein_coding synonymous_variant LOW 1482T>A Ile494Ile
M0045443 PFEBBJDI_00005 6605 4 Skin 0.50 protein_coding missense_variant MODERATE 1505T>C Leu502Pro
M0045444 PFEBBJDI_00005 6624 3 Skin 0.38 protein_coding synonymous_variant LOW 1524G>A Gly508Gly
M0045445 PFEBBJDI_00005 6642 4 Skin 0.50 protein_coding synonymous_variant LOW 1542A>T Ile514Ile
M0045446 PFEBBJDI_00005 6672 3 Skin 0.38 protein_coding synonymous_variant LOW 1572C>T Ala524Ala
M0045447 PFEBBJDI_00005 6705 3 Skin 0.38 protein_coding synonymous_variant LOW 1605T>A Arg535Arg
M0045448 PFEBBJDI_00005 6767 4 Skin 0.50 protein_coding missense_variant MODERATE 1667C>T Ala556Val
M0045449 PFEBBJDI_00005 7005 3 Skin 0.38 protein_coding synonymous_variant LOW 1905T>C Ser635Ser
M0045450 PFEBBJDI_00005 7028 3 Skin 0.38 protein_coding missense_variant MODERATE 1928A>G Gln643Arg
M0045451 PFEBBJDI_00005 7036 3 Skin 0.38 protein_coding synonymous_variant LOW 1936C>T Leu646Leu
M0045452 PFEBBJDI_00005 7095 3 Skin 0.38 protein_coding synonymous_variant LOW 1995G>T Leu665Leu
M0045453 PFEBBJDI_00005 7098 3 Skin 0.38 protein_coding synonymous_variant LOW 1998T>C Gly666Gly
M0045454 PFEBBJDI_00005 7191 4 Skin 0.50 protein_coding synonymous_variant LOW 2091T>C Leu697Leu
M0045455 PFEBBJDI_00007 7836 4 Skin 0.50 protein_coding synonymous_variant LOW 756A>G Glu252Glu
M0045456 PFEBBJDI_00007 7894 4 Skin 0.50 protein_coding missense_variant MODERATE 698C>A Thr233Asn
M0045457 PFEBBJDI_00007 7895 4 Skin 0.50 protein_coding missense_variant MODERATE 697A>G Thr233Ala
M0045458 PFEBBJDI_00007 7905 5 Skin 0.63 protein_coding missense_variant MODERATE 687G>C Gln229His
M0045459 PFEBBJDI_00007 7906 5 Skin 0.63 protein_coding missense_variant MODERATE 686A>G Gln229Arg
M0045460 PFEBBJDI_00008 8631 3 Skin 0.38 protein_coding synonymous_variant LOW 540A>G Gly180Gly
M0045461 PFEBBJDI_00008 8835 4 Skin 0.50 protein_coding synonymous_variant LOW 336G>A Val112Val
M0045462 PFEBBJDI_00009 9203 5 Skin 0.63 protein_coding missense_variant MODERATE 1104A>T Glu368Asp
M0045463 PFEBBJDI_00009 9251 4 Skin 0.50 protein_coding synonymous_variant LOW 1056T>C Arg352Arg
M0045464 PFEBBJDI_00009 9602 5 Skin 0.63 protein_coding synonymous_variant LOW 705G>A Ala235Ala
M0045465 PFEBBJDI_00009 9603 5 Skin 0.63 protein_coding missense_variant MODERATE 704C>A Ala235Glu
M0045466 PFEBBJDI_00009 9650 3 Skin 0.38 protein_coding synonymous_variant LOW 657C>T Cys219Cys
M0045467 PFEBBJDI_00009 9656 4 Skin 0.50 protein_coding synonymous_variant LOW 651G>A Ala217Ala
M0045468 PFEBBJDI_00009 9701 5 Skin 0.63 protein_coding synonymous_variant LOW 606A>G Ala202Ala
M0045469 PFEBBJDI_00009 9713 3 Skin 0.38 protein_coding synonymous_variant LOW 594G>A Glu198Glu
M0045470 PFEBBJDI_00009 9726 3 Skin 0.38 protein_coding missense_variant MODERATE 581A>T Gln194Leu
M0045471 PFEBBJDI_00009 9727 3 Skin 0.38 protein_coding stop_gained HIGH 580C>T Gln194*
M0045472 PFEBBJDI_00009 10088 4 Skin 0.50 protein_coding synonymous_variant LOW 219G>A Ala73Ala
M0045473 PFEBBJDI_00009 10139 4 Skin 0.50 protein_coding synonymous_variant LOW 168T>C Thr56Thr
M0045474 PFEBBJDI_00009 10280 4 Skin 0.50 protein_coding synonymous_variant LOW 27G>A Val9Val
M0045475 PFEBBJDI_00010 10333 3 Skin 0.38 protein_coding synonymous_variant LOW 651T>C Asp217Asp
M0045476 PFEBBJDI_00010 10351 4 Skin 0.50 protein_coding synonymous_variant LOW 633T>A Val211Val
M0045477 PFEBBJDI_00010 10846 4 Skin 0.50 protein_coding synonymous_variant LOW 138C>T Gly46Gly
M0045478 PFEBBJDI_00010 10885 5 Skin 0.63 protein_coding synonymous_variant LOW 99T>C Ala33Ala
M0045479 PFEBBJDI_00011 11262 4 Skin 0.50 protein_coding synonymous_variant LOW 588T>G Gly196Gly
M0045480 PFEBBJDI_00011 11265 4 Skin 0.50 protein_coding synonymous_variant LOW 585G>A Leu195Leu
M0045481 PFEBBJDI_00011 11267 4 Skin 0.50 protein_coding synonymous_variant LOW 583C>T Leu195Leu
M0045482 PFEBBJDI_00011 11505 3 Skin 0.38 protein_coding synonymous_variant LOW 345T>C Ala115Ala
M0045483 PFEBBJDI_00011 11550 5 Skin 0.63 protein_coding synonymous_variant LOW 300T>C Val100Val
M0045484 PFEBBJDI_00011 11640 4 Skin 0.50 protein_coding synonymous_variant LOW 210C>T Tyr70Tyr
M0045485 PFEBBJDI_00011 11643 3 Skin 0.38 protein_coding synonymous_variant LOW 207G>A Leu69Leu
M0045486 PFEBBJDI_00011 11646 5 Skin 0.63 protein_coding synonymous_variant LOW 204C>G Ser68Ser
M0045487 PFEBBJDI_00012 12059 3 Skin 0.38 protein_coding synonymous_variant LOW 636G>A Lys212Lys
M0045488 PFEBBJDI_00012 12275 3 Skin 0.38 protein_coding synonymous_variant LOW 420T>C Thr140Thr
M0045489 PFEBBJDI_00012 12308 4 Skin 0.50 protein_coding synonymous_variant LOW 387A>G Pro129Pro
M0045490 PFEBBJDI_00012 12476 5 Skin 0.63 protein_coding synonymous_variant LOW 219T>C Gly73Gly
M0045491 PFEBBJDI_00013 12804 5 Skin 0.63 protein_coding synonymous_variant LOW 948T>C His316His
M0045492 PFEBBJDI_00013 12837 4 Skin 0.50 protein_coding synonymous_variant LOW 915C>G Gly305Gly
M0045493 PFEBBJDI_00013 13179 4 Skin 0.50 protein_coding synonymous_variant LOW 573A>G Ser191Ser
M0045494 PFEBBJDI_00013 13213 5 Skin 0.63 protein_coding missense_variant MODERATE 539A>G His180Arg
M0045495 PFEBBJDI_00013 13232 4 Skin 0.50 protein_coding missense_variant MODERATE 520G>C Ala174Pro
M0045496 PFEBBJDI_00013 13368 5 Skin 0.63 protein_coding synonymous_variant LOW 384A>G Leu128Leu
M0045497 PFEBBJDI_00013 13380 3 Skin 0.38 protein_coding synonymous_variant LOW 372T>C Tyr124Tyr
M0045498 PFEBBJDI_00013 13404 4 Skin 0.50 protein_coding synonymous_variant LOW 348A>G Gln116Gln
M0045499 PFEBBJDI_00013 13460 5 Skin 0.63 protein_coding missense_variant MODERATE 292T>G Trp98Gly
M0045500 PFEBBJDI_00014 13771 5 Skin 0.63 protein_coding missense_variant MODERATE 566T>C Ile189Thr
M0045501 PFEBBJDI_00014 13878 3 Skin 0.38 protein_coding synonymous_variant LOW 459C>G Leu153Leu
M0045502 PFEBBJDI_00014 13962 3 Skin 0.38 protein_coding synonymous_variant LOW 375T>G Val125Val
M0045503 PFEBBJDI_00014 13992 3 Skin 0.38 protein_coding synonymous_variant LOW 345C>G Ala115Ala
M0045504 PFEBBJDI_00014 13996 3 Skin 0.38 protein_coding missense_variant MODERATE 341C>T Ala114Val
M0045505 PFEBBJDI_00014 13998 3 Skin 0.38 protein_coding synonymous_variant LOW 339T>C Thr113Thr
M0045506 PFEBBJDI_00014 14079 5 Skin 0.63 protein_coding synonymous_variant LOW 258A>G Val86Val
M0045507 PFEBBJDI_00014 14100 4 Skin 0.50 protein_coding synonymous_variant LOW 237T>C Phe79Phe
M0045508 PFEBBJDI_00014 14180 3 Skin 0.38 protein_coding synonymous_variant LOW 157T>C Leu53Leu
M0045509 PFEBBJDI_00014 14181 3 Skin 0.38 protein_coding synonymous_variant LOW 156A>G Leu52Leu
M0045510 PFEBBJDI_00014 14183 3 Skin 0.38 protein_coding synonymous_variant LOW 154T>C Leu52Leu
M0045511 PFEBBJDI_00014 14186 4 Skin 0.50 protein_coding synonymous_variant LOW 151C>T Leu51Leu
M0045512 PFEBBJDI_00014 14187 3 Skin 0.38 protein_coding synonymous_variant LOW 150T>C Ser50Ser
M0045513 PFEBBJDI_00015 14666 5 Skin 0.63 protein_coding synonymous_variant LOW 120T>C Arg40Arg
M0045514 PFEBBJDI_00016 14894 4 Skin 0.50 protein_coding synonymous_variant LOW 618G>A Pro206Pro
M0045515 PFEBBJDI_00016 14915 5 Skin 0.63 protein_coding synonymous_variant LOW 597T>G Leu199Leu
M0045516 PFEBBJDI_00016 14966 4 Skin 0.50 protein_coding synonymous_variant LOW 546G>A Val182Val
M0045517 PFEBBJDI_00016 15005 5 Skin 0.63 protein_coding synonymous_variant LOW 507T>C Asp169Asp
M0045518 PFEBBJDI_00016 15085 3 Skin 0.38 protein_coding synonymous_variant LOW 427T>C Leu143Leu
M0045519 PFEBBJDI_00016 15098 4 Skin 0.50 protein_coding synonymous_variant LOW 414C>T Val138Val
M0045520 PFEBBJDI_00016 15293 3 Skin 0.38 protein_coding synonymous_variant LOW 219G>A Val73Val
M0045521 PFEBBJDI_00016 15323 3 Skin 0.38 protein_coding synonymous_variant LOW 189C>A Gly63Gly
M0045522 PFEBBJDI_00016 15356 5 Skin 0.63 protein_coding synonymous_variant LOW 156G>A Leu52Leu
M0045523 PFEBBJDI_00010 15532 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4549G>A None
M0045524 PFEBBJDI_00010 15535 5 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -4552A>G None
M0045525 PFEBBJDI_00017 15903 5 Skin 0.63 protein_coding missense_variant MODERATE 200G>C Gly67Ala
M0045526 PFEBBJDI_00011 16344 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4495T>C None
M0045527 PFEBBJDI_00018 16510 3 Skin 0.38 protein_coding synonymous_variant LOW 213T>C Ser71Ser
M0045528 PFEBBJDI_00018 16549 3 Skin 0.38 protein_coding synonymous_variant LOW 174C>G Val58Val
M0045529 PFEBBJDI_00018 16657 3 Skin 0.38 protein_coding synonymous_variant LOW 66T>C Ile22Ile
M0045530 PFEBBJDI_00019 16890 4 Skin 0.50 protein_coding missense_variant MODERATE 61A>G Ile21Val
M0045531 PFEBBJDI_00019 16891 4 Skin 0.50 protein_coding synonymous_variant LOW 60C>T Ser20Ser
M0045532 PFEBBJDI_00012 17032 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4338G>A None
M0045533 PFEBBJDI_00020 17598 3 Skin 0.38 protein_coding synonymous_variant LOW 342C>T Gly114Gly
M0045534 PFEBBJDI_00020 17787 4 Skin 0.50 protein_coding synonymous_variant LOW 531G>A Val177Val
M0045535 PFEBBJDI_00020 17928 3 Skin 0.38 protein_coding synonymous_variant LOW 672C>G Thr224Thr
M0045536 PFEBBJDI_00020 17970 4 Skin 0.50 protein_coding synonymous_variant LOW 714T>C Asp238Asp
M0045537 PFEBBJDI_00020 17988 3 Skin 0.38 protein_coding synonymous_variant LOW 732A>G Glu244Glu
M0045538 PFEBBJDI_00020 18099 4 Skin 0.50 protein_coding synonymous_variant LOW 843T>C Tyr281Tyr
M0045539 PFEBBJDI_00020 18165 4 Skin 0.50 protein_coding synonymous_variant LOW 909A>C Ala303Ala
M0045540 PFEBBJDI_00020 18228 3 Skin 0.38 protein_coding synonymous_variant LOW 972C>T Arg324Arg
M0045541 PFEBBJDI_00020 18265 3 Skin 0.38 protein_coding missense_variant MODERATE 1009G>A Ala337Thr
M0045542 PFEBBJDI_00020 18268 3 Skin 0.38 protein_coding synonymous_variant LOW 1012T>C Leu338Leu
M0045543 PFEBBJDI_00020 18318 3 Skin 0.38 protein_coding synonymous_variant LOW 1062T>C Ile354Ile
M0045544 PFEBBJDI_00021 18824 3 Skin 0.38 protein_coding missense_variant MODERATE 928C>T Pro310Ser
M0045545 PFEBBJDI_00021 18894 3 Skin 0.38 protein_coding synonymous_variant LOW 858C>T Phe286Phe
M0045546 PFEBBJDI_00021 19149 3 Skin 0.38 protein_coding synonymous_variant LOW 603T>C Val201Val
M0045547 PFEBBJDI_00021 19152 3 Skin 0.38 protein_coding synonymous_variant LOW 600C>T Tyr200Tyr
M0045548 PFEBBJDI_00015 19765 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4980T>C None
M0045549 PFEBBJDI_00016 19794 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4283A>C None
M0045550 PFEBBJDI_00022 20300 4 Skin 0.50 protein_coding missense_variant MODERATE 313A>G Ser105Gly
M0045551 PFEBBJDI_00022 20332 3 Skin 0.38 protein_coding synonymous_variant LOW 345A>G Gly115Gly
M0045552 PFEBBJDI_00022 20404 3 Skin 0.38 protein_coding synonymous_variant LOW 417C>T Val139Val
M0045553 PFEBBJDI_00022 20584 3 Skin 0.38 protein_coding synonymous_variant LOW 597A>T Gly199Gly
M0045554 PFEBBJDI_00022 20842 4 Skin 0.50 protein_coding synonymous_variant LOW 855T>C Ala285Ala
M0045555 PFEBBJDI_00022 21217 4 Skin 0.50 protein_coding synonymous_variant LOW 1230C>T Val410Val
M0045556 PFEBBJDI_00022 21289 4 Skin 0.50 protein_coding synonymous_variant LOW 1302C>T Asp434Asp
M0045557 PFEBBJDI_00022 21295 4 Skin 0.50 protein_coding synonymous_variant LOW 1308T>G Leu436Leu
M0045558 PFEBBJDI_00018 21357 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4635T>C None
M0045559 PFEBBJDI_00023 22257 4 Skin 0.50 protein_coding synonymous_variant LOW 813T>G Ala271Ala
M0045560 PFEBBJDI_00023 22671 4 Skin 0.50 protein_coding synonymous_variant LOW 1227A>T Ile409Ile
M0045561 PFEBBJDI_00023 22791 4 Skin 0.50 protein_coding synonymous_variant LOW 1347A>G Arg449Arg
M0045562 PFEBBJDI_00021 22919 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3168G>A None
M0045563 PFEBBJDI_00021 22970 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3219G>T None
M0045564 PFEBBJDI_00021 23078 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3327A>C None
M0045565 PFEBBJDI_00021 23086 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3335T>G None
M0045566 PFEBBJDI_00024 23500 3 Skin 0.38 protein_coding synonymous_variant LOW 378T>G Leu126Leu
M0045567 PFEBBJDI_00024 23527 5 Skin 0.63 protein_coding synonymous_variant LOW 405T>G Val135Val
M0045568 PFEBBJDI_00024 23857 4 Skin 0.50 protein_coding synonymous_variant LOW 735G>C Ser245Ser
M0045569 PFEBBJDI_00025 24223 5 Skin 0.63 protein_coding synonymous_variant LOW 135C>A Ala45Ala
M0045570 PFEBBJDI_00025 24391 4 Skin 0.50 protein_coding synonymous_variant LOW 303A>G Ala101Ala
M0045571 PFEBBJDI_00025 24406 4 Skin 0.50 protein_coding synonymous_variant LOW 318A>G Ala106Ala
M0045572 PFEBBJDI_00001 1205 3 Skin 0.38 protein_coding synonymous_variant LOW 549T>C Arg183Arg
M0045573 PFEBBJDI_00003 2783 3 Skin 0.38 protein_coding synonymous_variant LOW 612C>T Ile204Ile
M0045574 PFEBBJDI_00003 3056 3 Skin 0.38 protein_coding synonymous_variant LOW 339G>C Ala113Ala
M0045575 PFEBBJDI_00004 3655 3 Skin 0.38 protein_coding synonymous_variant LOW 1257T>C Leu419Leu
M0045576 PFEBBJDI_00004 3765 3 Skin 0.38 protein_coding synonymous_variant LOW 1147T>C Leu383Leu
M0045577 PFEBBJDI_00004 3787 3 Skin 0.38 protein_coding synonymous_variant LOW 1125T>C Thr375Thr
M0045578 PFEBBJDI_00004 3796 3 Skin 0.38 protein_coding synonymous_variant LOW 1116A>G Lys372Lys
M0045579 PFEBBJDI_00007 8004 3 Skin 0.38 protein_coding synonymous_variant LOW 588G>A Thr196Thr
M0045580 PFEBBJDI_00009 9566 3 Skin 0.38 protein_coding synonymous_variant LOW 741C>T Ile247Ile
M0045581 PFEBBJDI_00009 9582 3 Skin 0.38 protein_coding missense_variant MODERATE 725G>A Arg242Gln
M0045582 PFEBBJDI_00009 9992 4 Skin 0.50 protein_coding synonymous_variant LOW 315T>C Gly105Gly
M0045583 PFEBBJDI_00010 10465 3 Skin 0.38 protein_coding synonymous_variant LOW 519C>T Leu173Leu
M0045584 PFEBBJDI_00010 10642 3 Skin 0.38 protein_coding synonymous_variant LOW 342A>G Pro114Pro
M0045585 PFEBBJDI_00011 11403 4 Skin 0.50 protein_coding synonymous_variant LOW 447T>C Gly149Gly
M0045586 PFEBBJDI_00011 11406 3 Skin 0.38 protein_coding synonymous_variant LOW 444C>T Gly148Gly
M0045587 PFEBBJDI_00012 12572 3 Skin 0.38 protein_coding synonymous_variant LOW 123C>T Arg41Arg
M0045588 PFEBBJDI_00003 3131 3 Skin 0.38 protein_coding synonymous_variant LOW 264A>T Ile88Ile
M0045589 PFEBBJDI_00008 8804 3 Skin 0.38 protein_coding missense_variant MODERATE 367T>A Ser123Thr
M0045590 PFEBBJDI_00011 16374 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4525G>T None
M0045591 PFEBBJDI_00023 22041 3 Skin 0.38 protein_coding synonymous_variant LOW 597A>G Glu199Glu
M0045592 PFEBBJDI_00023 22129 3 Skin 0.38 protein_coding synonymous_variant LOW 685T>C Leu229Leu
M0045593 PFEBBJDI_00023 22179 3 Skin 0.38 protein_coding synonymous_variant LOW 735T>C Ile245Ile
M0045594 PFEBBJDI_00023 22182 3 Skin 0.38 protein_coding synonymous_variant LOW 738C>T Ile246Ile
M0045595 PFEBBJDI_00028 26027 3 Skin 0.38 protein_coding missense_variant MODERATE 583C>A His195Asn
M0045596 PFEBBJDI_00028 26036 3 Skin 0.38 protein_coding synonymous_variant LOW 574T>C Leu192Leu
M0045597 PFEBBJDI_00030 28097 3 Skin 0.38 protein_coding missense_variant MODERATE 37G>A Val13Met
M0045598 PFEBBJDI_00031 28324 4 Skin 0.50 protein_coding missense_variant MODERATE 1138A>G Thr380Ala
M0045599 PFEBBJDI_00031 29247 4 Skin 0.50 protein_coding missense_variant MODERATE 215T>C Val72Ala
M0045600 PFEBBJDI_00032 30168 3 Skin 0.38 protein_coding synonymous_variant LOW 1302C>T Arg434Arg
M0045601 PFEBBJDI_00032 30951 3 Skin 0.38 protein_coding synonymous_variant LOW 519T>C Leu173Leu
M0045602 PFEBBJDI_00033 32046 3 Skin 0.38 protein_coding missense_variant MODERATE 1880A>G Gln627Arg
M0045603 PFEBBJDI_00033 32366 3 Skin 0.38 protein_coding synonymous_variant LOW 1560T>C Arg520Arg
M0045604 PFEBBJDI_00033 32738 3 Skin 0.38 protein_coding synonymous_variant LOW 1188C>T Leu396Leu
M0045605 PFEBBJDI_00033 32872 3 Skin 0.38 protein_coding missense_variant MODERATE 1054T>C Tyr352His
M0045606 PFEBBJDI_00033 33224 3 Skin 0.38 protein_coding synonymous_variant LOW 702T>C Pro234Pro
M0045607 PFEBBJDI_00033 33244 3 Skin 0.38 protein_coding missense_variant MODERATE 682A>G Thr228Ala
M0045608 PFEBBJDI_00026 26708 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -1841C>G None
M0045609 PFEBBJDI_00029 27152 3 Skin 0.38 protein_coding synonymous_variant LOW 324T>C Val108Val
M0045610 PFEBBJDI_00029 27221 3 Skin 0.38 protein_coding synonymous_variant LOW 393A>G Val131Val
M0045611 PFEBBJDI_00029 27245 3 Skin 0.38 protein_coding synonymous_variant LOW 417C>T Arg139Arg
M0045612 PFEBBJDI_00029 27251 3 Skin 0.38 protein_coding synonymous_variant LOW 423T>C Ala141Ala
M0045613 PFEBBJDI_00029 27350 3 Skin 0.38 protein_coding synonymous_variant LOW 522C>T Tyr174Tyr
M0045614 PFEBBJDI_00029 27395 3 Skin 0.38 protein_coding synonymous_variant LOW 567T>C Gly189Gly
M0045615 PFEBBJDI_00029 27413 3 Skin 0.38 protein_coding synonymous_variant LOW 585T>C Asp195Asp
M0045616 PFEBBJDI_00029 27416 3 Skin 0.38 protein_coding synonymous_variant LOW 588T>C Ile196Ile
M0045617 PFEBBJDI_00029 27431 3 Skin 0.38 protein_coding synonymous_variant LOW 603G>A Lys201Lys
M0045618 PFEBBJDI_00029 27593 3 Skin 0.38 protein_coding synonymous_variant LOW 765T>C Ala255Ala
M0045619 PFEBBJDI_00030 28128 3 Skin 0.38 protein_coding synonymous_variant LOW 6T>C Asn2Asn
M0045620 PFEBBJDI_00031 28247 3 Skin 0.38 protein_coding synonymous_variant LOW 1215T>G Val405Val
M0045621 PFEBBJDI_00031 29315 3 Skin 0.38 protein_coding synonymous_variant LOW 147A>G Gly49Gly
M0045622 PFEBBJDI_00031 29348 3 Skin 0.38 protein_coding synonymous_variant LOW 114A>G Pro38Pro
M0045623 PFEBBJDI_00032 29622 3 Skin 0.38 protein_coding synonymous_variant LOW 1848T>G Pro616Pro
M0045624 PFEBBJDI_00032 29629 3 Skin 0.38 protein_coding missense_variant MODERATE 1841A>G Asn614Ser
M0045625 PFEBBJDI_00032 29703 3 Skin 0.38 protein_coding synonymous_variant LOW 1767C>T Arg589Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
PFEBBJDI_00031 PHI:3448 pgaC 90.5 4.6e-236 1 442 0.9977 1.0000 rodents pneumonia production of poly-b-linkedN-acetylglucosamine reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
PFEBBJDI_00022 QDR58029.1|GH4 99.8 0 1 450 1 1
PFEBBJDI_00031 WHB02587.1|GT2 100 0 1 443 1 1
PFEBBJDI_00032 QSB57206.1|CE4|GH153 100 0 1 671 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
PFEBBJDI_00020 2.A.1.6.4 91 2.5e-262 1 500 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
PFEBBJDI_00023 2.A.2.1.1 79.4 3.9e-209 1 461 0.9872 0.9746 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.2 The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family