Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2535
  Reference Plasmid   1111525849773237_bin.9__k141_319219
  Reference Plasmid Size   2974
  Reference Plasmid GC Content   0.27
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0046568 OOIOPLCB_00001 675 7 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -1C>A None
M0046569 OOIOPLCB_00001 711 7 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -37C>A None
M0046570 OOIOPLCB_00001 712 7 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -38A>G None
M0046571 OOIOPLCB_00001 716 8 Skin 0.53 protein_coding upstream_gene_variant MODIFIER -42G>A None
M0046572 OOIOPLCB_00001 720 7 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -46T>C None
M0046573 OOIOPLCB_00002 728 7 Skin 0.47 protein_coding synonymous_variant LOW 543A>G Lys181Lys
M0046574 OOIOPLCB_00002 755 7 Skin 0.47 protein_coding synonymous_variant LOW 516C>A Ile172Ile
M0046575 OOIOPLCB_00002 779 7 Skin 0.47 protein_coding synonymous_variant LOW 492G>T Leu164Leu
M0046576 OOIOPLCB_00002 794 7 Skin 0.47 protein_coding synonymous_variant LOW 477A>G Gln159Gln
M0046577 OOIOPLCB_00002 797 7 Skin 0.47 protein_coding synonymous_variant LOW 474C>T Arg158Arg
M0046578 OOIOPLCB_00002 815 7 Skin 0.47 protein_coding synonymous_variant LOW 456T>A Ser152Ser
M0046579 OOIOPLCB_00002 1001 4 Skin 0.27 protein_coding synonymous_variant LOW 270C>T Asp90Asp
M0046580 OOIOPLCB_00002 1028 4 Skin 0.27 protein_coding synonymous_variant LOW 243A>G Lys81Lys
M0046581 OOIOPLCB_00002 1046 4 Skin 0.27 protein_coding synonymous_variant LOW 225C>T Val75Val
M0046582 OOIOPLCB_00002 1048 4 Skin 0.27 protein_coding missense_variant MODERATE 223G>A Val75Ile
M0046583 OOIOPLCB_00002 1052 4 Skin 0.27 protein_coding synonymous_variant LOW 219G>A Gly73Gly
M0046584 OOIOPLCB_00002 1058 4 Skin 0.27 protein_coding synonymous_variant LOW 213G>A Gln71Gln
M0046585 OOIOPLCB_00002 1061 4 Skin 0.27 protein_coding synonymous_variant LOW 210T>C Asn70Asn
M0046586 OOIOPLCB_00002 1068 4 Skin 0.27 protein_coding missense_variant MODERATE 203G>A Arg68His
M0046587 OOIOPLCB_00002 1142 5 Skin 0.33 protein_coding synonymous_variant LOW 129A>G Gly43Gly
M0046588 OOIOPLCB_00002 1169 5 Skin 0.33 protein_coding synonymous_variant LOW 102A>G Leu34Leu
M0046589 OOIOPLCB_00002 1210 5 Skin 0.33 protein_coding missense_variant MODERATE 61G>T Val21Leu
M0046590 OOIOPLCB_00001 1290 4 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -616G>A None
M0046591 OOIOPLCB_00001 1297 11 Skin 0.73 protein_coding upstream_gene_variant MODIFIER -623C>T None
M0046592 OOIOPLCB_00001 1303 4 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -629A>G None
M0046593 OOIOPLCB_00001 1308 4 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -634C>T None
M0046594 OOIOPLCB_00003 1389 6 Skin 0.40 protein_coding missense_variant MODERATE 13G>C Glu5Gln
M0046595 OOIOPLCB_00003 1403 6 Skin 0.40 protein_coding missense_variant MODERATE 27A>T Lys9Asn
M0046596 OOIOPLCB_00003 1416 6 Skin 0.40 protein_coding synonymous_variant LOW 40C>T Leu14Leu
M0046597 OOIOPLCB_00003 1423 6 Skin 0.40 protein_coding missense_variant MODERATE 47A>C Glu16Ala
M0046598 OOIOPLCB_00003 1490 4 Skin 0.27 protein_coding synonymous_variant LOW 114A>C Pro38Pro
M0046599 OOIOPLCB_00003 1517 4 Skin 0.27 protein_coding synonymous_variant LOW 141T>A Leu47Leu
M0046600 OOIOPLCB_00003 1521 4 Skin 0.27 protein_coding missense_variant MODERATE 145G>C Asp49His
M0046601 OOIOPLCB_00003 1528 4 Skin 0.27 protein_coding missense_variant MODERATE 152A>G Asn51Ser
M0046602 OOIOPLCB_00003 1529 4 Skin 0.27 protein_coding synonymous_variant LOW 153T>C Asn51Asn
M0046603 OOIOPLCB_00003 1547 4 Skin 0.27 protein_coding synonymous_variant LOW 171C>T Val57Val
M0046604 OOIOPLCB_00003 1553 4 Skin 0.27 protein_coding synonymous_variant LOW 177T>C Thr59Thr
M0046605 OOIOPLCB_00003 1574 4 Skin 0.27 protein_coding synonymous_variant LOW 198A>T Ala66Ala
M0046606 OOIOPLCB_00003 1595 4 Skin 0.27 protein_coding synonymous_variant LOW 219T>A Leu73Leu
M0046607 OOIOPLCB_00003 1607 4 Skin 0.27 protein_coding synonymous_variant LOW 231T>C Ser77Ser
M0046608 OOIOPLCB_00003 1617 9 Skin 0.60 protein_coding missense_variant MODERATE 241G>A Asp81Asn
M0046609 OOIOPLCB_00001 1957 12 Skin 0.80 protein_coding upstream_gene_variant MODIFIER -1283T>G None
M0046610 OOIOPLCB_00001 1969 6 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -1295A>T None
M0046611 OOIOPLCB_00004 2177 6 Skin 0.40 protein_coding synonymous_variant LOW 528T>A Val176Val
M0046612 OOIOPLCB_00004 2219 6 Skin 0.40 protein_coding synonymous_variant LOW 486G>A Pro162Pro
M0046613 OOIOPLCB_00004 2240 5 Skin 0.33 protein_coding synonymous_variant LOW 465T>A Leu155Leu
M0046614 OOIOPLCB_00004 2258 5 Skin 0.33 protein_coding synonymous_variant LOW 447C>A Gly149Gly
M0046615 OOIOPLCB_00004 2315 5 Skin 0.33 protein_coding synonymous_variant LOW 390C>T Asp130Asp
M0046616 OOIOPLCB_00004 2327 7 Skin 0.47 protein_coding synonymous_variant LOW 378T>G Gly126Gly
M0046617 OOIOPLCB_00004 2350 5 Skin 0.33 protein_coding missense_variant MODERATE 355G>A Val119Ile
M0046618 OOIOPLCB_00004 2525 6 Skin 0.40 protein_coding missense_variant MODERATE 180C>A Phe60Leu
M0046619 OOIOPLCB_00001 582 7 Skin 0.47 protein_coding synonymous_variant LOW 93C>T Asn31Asn
M0046620 OOIOPLCB_00001 615 7 Skin 0.47 protein_coding synonymous_variant LOW 60T>A Arg20Arg
M0046621 OOIOPLCB_00001 633 7 Skin 0.47 protein_coding synonymous_variant LOW 42G>A Leu14Leu
M0046622 OOIOPLCB_00002 857 6 Skin 0.40 protein_coding synonymous_variant LOW 414T>A Gly138Gly
M0046623 OOIOPLCB_00002 926 6 Skin 0.40 protein_coding synonymous_variant LOW 345C>T Asp115Asp
M0046624 OOIOPLCB_00002 1027 6 Skin 0.40 protein_coding synonymous_variant LOW 244C>T Leu82Leu
M0046625 OOIOPLCB_00002 1145 5 Skin 0.33 protein_coding synonymous_variant LOW 126T>C Phe42Phe
M0046626 OOIOPLCB_00003 1815 6 Skin 0.40 protein_coding missense_variant MODERATE 439T>G Tyr147Asp
M0046627 OOIOPLCB_00001 1955 6 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -1281G>T None
M0046628 OOIOPLCB_00004 1984 6 Skin 0.40 protein_coding synonymous_variant LOW 721A>C Arg241Arg
M0046629 OOIOPLCB_00004 2000 6 Skin 0.40 protein_coding synonymous_variant LOW 705T>C Ile235Ile
M0046630 OOIOPLCB_00004 2027 6 Skin 0.40 protein_coding synonymous_variant LOW 678T>A Ser226Ser
M0046631 OOIOPLCB_00004 2066 6 Skin 0.40 protein_coding synonymous_variant LOW 639C>T Ile213Ile
M0046632 OOIOPLCB_00004 2069 6 Skin 0.40 protein_coding synonymous_variant LOW 636A>G Glu212Glu
M0046633 OOIOPLCB_00004 2084 6 Skin 0.40 protein_coding synonymous_variant LOW 621A>G Glu207Glu
M0046634 OOIOPLCB_00004 2108 6 Skin 0.40 protein_coding synonymous_variant LOW 597C>T Tyr199Tyr
M0046635 OOIOPLCB_00004 2147 6 Skin 0.40 protein_coding synonymous_variant LOW 558A>T Ile186Ile
M0046636 OOIOPLCB_00004 2426 5 Skin 0.33 protein_coding synonymous_variant LOW 279A>T Gly93Gly
M0046637 OOIOPLCB_00004 2462 4 Skin 0.27 protein_coding synonymous_variant LOW 243C>T Ile81Ile
M0046638 OOIOPLCB_00004 2516 4 Skin 0.27 protein_coding synonymous_variant LOW 189T>G Ala63Ala
M0046639 OOIOPLCB_00004 2537 4 Skin 0.27 protein_coding synonymous_variant LOW 168T>C Ala56Ala
M0046640 OOIOPLCB_00004 2549 4 Skin 0.27 protein_coding synonymous_variant LOW 156T>C Val52Val
M0046641 OOIOPLCB_00004 2558 4 Skin 0.27 protein_coding synonymous_variant LOW 147T>C Asn49Asn
M0046642 OOIOPLCB_00004 2564 4 Skin 0.27 protein_coding synonymous_variant LOW 141G>A Val47Val
M0046643 OOIOPLCB_00004 2579 4 Skin 0.27 protein_coding synonymous_variant LOW 126T>C Ser42Ser
M0046644 OOIOPLCB_00004 2618 4 Skin 0.27 protein_coding synonymous_variant LOW 87C>A Gly29Gly
M0046645 OOIOPLCB_00004 2645 4 Skin 0.27 protein_coding synonymous_variant LOW 60G>A Thr20Thr
M0046646 OOIOPLCB_00004 2660 4 Skin 0.27 protein_coding synonymous_variant LOW 45T>A Ile15Ile
M0046647 OOIOPLCB_00004 2662 4 Skin 0.27 protein_coding missense_variant MODERATE 43A>T Ile15Phe
M0046648 OOIOPLCB_00004 2678 4 Skin 0.27 protein_coding synonymous_variant LOW 27T>C Phe9Phe
M0046649 OOIOPLCB_00004 2684 4 Skin 0.27 protein_coding synonymous_variant LOW 21T>C Val7Val
M0046650 OOIOPLCB_00004 2690 4 Skin 0.27 protein_coding synonymous_variant LOW 15A>G Gln5Gln
M0046651 OOIOPLCB_00005 2752 4 Skin 0.27 protein_coding synonymous_variant LOW 216C>T Ser72Ser
M0046652 OOIOPLCB_00005 2776 4 Skin 0.27 protein_coding synonymous_variant LOW 192G>T Pro64Pro
M0046653 OOIOPLCB_00005 2800 3 Skin 0.20 protein_coding synonymous_variant LOW 168C>A Ser56Ser
M0046654 OOIOPLCB_00005 2808 3 Skin 0.20 protein_coding synonymous_variant LOW 160C>T Leu54Leu
M0046655 OOIOPLCB_00005 2836 3 Skin 0.20 protein_coding synonymous_variant LOW 132A>T Ile44Ile
M0046656 OOIOPLCB_00005 2839 3 Skin 0.20 protein_coding synonymous_variant LOW 129T>C Ile43Ile
M0046657 OOIOPLCB_00002 1257 6 Skin 0.40 protein_coding missense_variant MODERATE 14A>T Asn5Ile
M0046658 OOIOPLCB_00003 1724 5 Skin 0.33 protein_coding missense_variant MODERATE 348A>T Arg116Ser
M0046659 OOIOPLCB_00003 1742 5 Skin 0.33 protein_coding synonymous_variant LOW 366T>C Thr122Thr
M0046660 OOIOPLCB_00003 1904 5 Skin 0.33 protein_coding synonymous_variant LOW 528T>A Val176Val
M0046661 OOIOPLCB_00004 2057 5 Skin 0.33 protein_coding synonymous_variant LOW 648A>G Ser216Ser
M0046662 OOIOPLCB_00004 2138 5 Skin 0.33 protein_coding synonymous_variant LOW 567C>T Ile189Ile
M0046663 OOIOPLCB_00002 989 5 Skin 0.33 protein_coding synonymous_variant LOW 282A>G Lys94Lys
M0046664 OOIOPLCB_00003 1435 3 Skin 0.20 protein_coding missense_variant MODERATE 59A>G Gln20Arg
M0046665 OOIOPLCB_00003 1604 4 Skin 0.27 protein_coding synonymous_variant LOW 228T>A Val76Val
M0046666 OOIOPLCB_00003 1850 4 Skin 0.27 protein_coding synonymous_variant LOW 474A>T Thr158Thr
M0046667 OOIOPLCB_00004 2075 3 Skin 0.20 protein_coding synonymous_variant LOW 630T>A Thr210Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term