Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2541
  Reference Plasmid   1111525849852267_bin.3__k141_273136
  Reference Plasmid Size   146684
  Reference Plasmid GC Content   0.39
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0046942 DCBHLJEK_00005 2561 3 Skin 0.25 protein_coding synonymous_variant LOW 138T>C Gly46Gly
M0046943 DCBHLJEK_00006 2978 3 Skin 0.25 protein_coding synonymous_variant LOW 39T>C Asn13Asn
M0046944 DCBHLJEK_00007 3535 3 Skin 0.25 protein_coding synonymous_variant LOW 273G>A Pro91Pro
M0046945 DCBHLJEK_00007 3628 3 Skin 0.25 protein_coding synonymous_variant LOW 366G>A Thr122Thr
M0046946 DCBHLJEK_00007 3970 3 Skin 0.25 protein_coding synonymous_variant LOW 708T>C Ala236Ala
M0046947 DCBHLJEK_00007 3988 3 Skin 0.25 protein_coding synonymous_variant LOW 726G>A Gly242Gly
M0046948 DCBHLJEK_00007 4051 3 Skin 0.25 protein_coding synonymous_variant LOW 789A>T Ile263Ile
M0046949 DCBHLJEK_00007 4060 3 Skin 0.25 protein_coding synonymous_variant LOW 798C>A Thr266Thr
M0046950 DCBHLJEK_00007 4420 3 Skin 0.25 protein_coding synonymous_variant LOW 1158G>T Ala386Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
DCBHLJEK_00062 PHI:7637 CspA 86.2 1.3e-28 1 65 0.9559 0.9848 bony fishes listeriosis cold shock protein reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
DCBHLJEK_00009 QTJ52211.1|GH2|GH20 98.1 0 1 2709 1 1
DCBHLJEK_00025 QTJ55149.1|GT26 100 1.77e-179 1 244 1 1
DCBHLJEK_00026 QTJ52197.1|GT4 100 4.61e-271 1 367 1 1
DCBHLJEK_00029 QTJ50550.1|CE9 99.5 1.34e-275 1 377 1 1
DCBHLJEK_00143 QTJ33340.1|GH125 100 0 1 432 1 1
DCBHLJEK_00144 QTJ57494.1|GH1 99.8 0 1 467 1 1
DCBHLJEK_00145 QJS96109.1|GH38 98.5 0 1 896 1 1
DCBHLJEK_00146 QTJ60508.1|GH92 98.1 0 1 735 1 1
DCBHLJEK_00148 QTJ42372.1|GH29 98.1 0 1 473 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term