Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2575
  Reference Plasmid   1111525849853831_bin.3__k141_252633
  Reference Plasmid Size   12438
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0047459 IFDKNBCC_00008 6414 29 Skin 0.31 protein_coding synonymous_variant LOW 321C>T Ser107Ser
M0047460 IFDKNBCC_00008 6462 27 Skin 0.29 protein_coding synonymous_variant LOW 273T>C Ser91Ser
M0047461 IFDKNBCC_00008 6587 60 Skin 0.65 protein_coding missense_variant MODERATE 148G>A Val50Ile
M0047462 IFDKNBCC_00008 6621 61 Skin 0.66 protein_coding synonymous_variant LOW 114A>G Ala38Ala
M0047463 IFDKNBCC_00009 7007 23 Skin 0.25 protein_coding synonymous_variant LOW 117G>C Val39Val
M0047464 IFDKNBCC_00006 7175 32 Skin 0.34 protein_coding upstream_gene_variant MODIFIER -3011T>C None
M0047465 IFDKNBCC_00006 7189 32 Skin 0.34 protein_coding upstream_gene_variant MODIFIER -3025G>T None
M0047466 IFDKNBCC_00006 7222 33 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -3058C>G None
M0047467 IFDKNBCC_00006 7236 33 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -3072C>G None
M0047468 IFDKNBCC_00006 7253 33 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -3089G>C None
M0047469 IFDKNBCC_00010 7537 65 Skin 0.70 protein_coding synonymous_variant LOW 351C>T Gly117Gly
M0047470 IFDKNBCC_00010 7548 65 Skin 0.70 protein_coding missense_variant MODERATE 340T>C Cys114Arg
M0047471 IFDKNBCC_00011 8061 31 Skin 0.33 protein_coding synonymous_variant LOW 1818T>C Gly606Gly
M0047472 IFDKNBCC_00011 8064 31 Skin 0.33 protein_coding synonymous_variant LOW 1815C>T Gly605Gly
M0047473 IFDKNBCC_00011 8097 28 Skin 0.30 protein_coding synonymous_variant LOW 1782C>G Gly594Gly
M0047474 IFDKNBCC_00011 8100 28 Skin 0.30 protein_coding synonymous_variant LOW 1779T>C Gly593Gly
M0047475 IFDKNBCC_00011 8121 28 Skin 0.30 protein_coding synonymous_variant LOW 1758C>T His586His
M0047476 IFDKNBCC_00011 8148 29 Skin 0.31 protein_coding synonymous_variant LOW 1731G>A Gln577Gln
M0047477 IFDKNBCC_00011 8150 29 Skin 0.31 protein_coding missense_variant MODERATE 1729C>A Gln577Lys
M0047478 IFDKNBCC_00011 8718 44 Skin 0.47 protein_coding synonymous_variant LOW 1161C>T Arg387Arg
M0047479 IFDKNBCC_00011 8742 43 Skin 0.46 protein_coding synonymous_variant LOW 1137C>T Ile379Ile
M0047480 IFDKNBCC_00011 8754 46 Skin 0.49 protein_coding missense_variant MODERATE 1125C>G Ser375Arg
M0047481 IFDKNBCC_00011 8755 46 Skin 0.49 protein_coding missense_variant MODERATE 1124G>A Ser375Asn
M0047482 IFDKNBCC_00011 8756 46 Skin 0.49 protein_coding missense_variant MODERATE 1123A>C Ser375Arg
M0047483 IFDKNBCC_00011 8757 46 Skin 0.49 protein_coding synonymous_variant LOW 1122A>G Lys374Lys
M0047484 IFDKNBCC_00011 8766 46 Skin 0.49 protein_coding synonymous_variant LOW 1113T>C His371His
M0047485 IFDKNBCC_00011 8805 43 Skin 0.46 protein_coding synonymous_variant LOW 1074T>G Val358Val
M0047486 IFDKNBCC_00002 4254 6 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3391C>T None
M0047487 IFDKNBCC_00002 4256 6 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3393T>C None
M0047488 IFDKNBCC_00007 4468 7 Skin 0.08 protein_coding missense_variant MODERATE 81A>T Lys27Asn
M0047489 IFDKNBCC_00007 4487 8 Skin 0.09 protein_coding missense_variant MODERATE 100G>A Ala34Thr
M0047490 IFDKNBCC_00007 4522 8 Skin 0.09 protein_coding synonymous_variant LOW 135C>A Gly45Gly
M0047491 IFDKNBCC_00007 4573 11 Skin 0.12 protein_coding synonymous_variant LOW 186T>C Asp62Asp
M0047492 IFDKNBCC_00007 4578 11 Skin 0.12 protein_coding missense_variant MODERATE 191T>G Leu64Arg
M0047493 IFDKNBCC_00007 4834 6 Skin 0.06 protein_coding synonymous_variant LOW 447G>A Pro149Pro
M0047494 IFDKNBCC_00007 4861 8 Skin 0.09 protein_coding synonymous_variant LOW 474T>C Arg158Arg
M0047495 IFDKNBCC_00007 4960 5 Skin 0.05 protein_coding synonymous_variant LOW 573C>T Thr191Thr
M0047496 IFDKNBCC_00007 5008 5 Skin 0.05 protein_coding synonymous_variant LOW 621G>C Gly207Gly
M0047497 IFDKNBCC_00007 5510 3 Skin 0.03 protein_coding missense_variant MODERATE 1123G>A Val375Ile
M0047498 IFDKNBCC_00007 5560 3 Skin 0.03 protein_coding synonymous_variant LOW 1173A>G Ala391Ala
M0047499 IFDKNBCC_00007 5603 16 Skin 0.17 protein_coding missense_variant MODERATE 1216T>G Ser406Ala
M0047500 IFDKNBCC_00007 5611 15 Skin 0.16 protein_coding synonymous_variant LOW 1224C>G Ala408Ala
M0047501 IFDKNBCC_00007 5617 15 Skin 0.16 protein_coding synonymous_variant LOW 1230C>G Val410Val
M0047502 IFDKNBCC_00007 5620 17 Skin 0.18 protein_coding synonymous_variant LOW 1233G>A Glu411Glu
M0047503 IFDKNBCC_00007 5626 15 Skin 0.16 protein_coding synonymous_variant LOW 1239G>C Leu413Leu
M0047504 IFDKNBCC_00007 5632 15 Skin 0.16 protein_coding synonymous_variant LOW 1245G>C Ala415Ala
M0047505 IFDKNBCC_00007 5635 15 Skin 0.16 protein_coding synonymous_variant LOW 1248G>C Arg416Arg
M0047506 IFDKNBCC_00007 5641 15 Skin 0.16 protein_coding synonymous_variant LOW 1254C>G Val418Val
M0047507 IFDKNBCC_00007 5654 15 Skin 0.16 protein_coding missense_variant MODERATE 1267G>A Gly423Arg
M0047508 IFDKNBCC_00007 5655 15 Skin 0.16 protein_coding missense_variant MODERATE 1268G>C Gly423Ala
M0047509 IFDKNBCC_00007 5656 15 Skin 0.16 protein_coding synonymous_variant LOW 1269G>C Gly423Gly
M0047510 IFDKNBCC_00007 5686 15 Skin 0.16 protein_coding synonymous_variant LOW 1299T>C Gly433Gly
M0047511 IFDKNBCC_00007 5710 15 Skin 0.16 protein_coding synonymous_variant LOW 1323T>C Ile441Ile
M0047512 IFDKNBCC_00007 5768 19 Skin 0.20 protein_coding missense_variant MODERATE 1381G>A Val461Ile
M0047513 IFDKNBCC_00007 5785 15 Skin 0.16 protein_coding synonymous_variant LOW 1398C>T Asp466Asp
M0047514 IFDKNBCC_00007 5786 15 Skin 0.16 protein_coding missense_variant MODERATE 1399G>A Gly467Ser
M0047515 IFDKNBCC_00007 5794 15 Skin 0.16 protein_coding synonymous_variant LOW 1407G>A Glu469Glu
M0047516 IFDKNBCC_00007 5797 15 Skin 0.16 protein_coding synonymous_variant LOW 1410C>G Val470Val
M0047517 IFDKNBCC_00007 5809 15 Skin 0.16 protein_coding synonymous_variant LOW 1422A>G Glu474Glu
M0047518 IFDKNBCC_00007 5845 18 Skin 0.19 protein_coding synonymous_variant LOW 1458C>T Val486Val
M0047519 IFDKNBCC_00007 5859 18 Skin 0.19 protein_coding missense_variant MODERATE 1472C>G Thr491Ser
M0047520 IFDKNBCC_00007 5878 18 Skin 0.19 protein_coding synonymous_variant LOW 1491C>G Thr497Thr
M0047521 IFDKNBCC_00007 5884 18 Skin 0.19 protein_coding synonymous_variant LOW 1497C>G Leu499Leu
M0047522 IFDKNBCC_00007 5917 16 Skin 0.17 protein_coding synonymous_variant LOW 1530T>C Arg510Arg
M0047523 IFDKNBCC_00007 5929 16 Skin 0.17 protein_coding synonymous_variant LOW 1542T>C Pro514Pro
M0047524 IFDKNBCC_00007 5940 16 Skin 0.17 protein_coding missense_variant MODERATE 1553T>G Leu518Arg
M0047525 IFDKNBCC_00007 5951 16 Skin 0.17 protein_coding missense_variant MODERATE 1564G>T Ala522Ser
M0047526 IFDKNBCC_00007 5953 16 Skin 0.17 protein_coding synonymous_variant LOW 1566C>G Ala522Ala
M0047527 IFDKNBCC_00007 5958 16 Skin 0.17 protein_coding missense_variant MODERATE 1571A>G Asn524Ser
M0047528 IFDKNBCC_00007 5968 16 Skin 0.17 protein_coding synonymous_variant LOW 1581G>A Glu527Glu
M0047529 IFDKNBCC_00007 5977 16 Skin 0.17 protein_coding synonymous_variant LOW 1590C>G Arg530Arg
M0047530 IFDKNBCC_00007 5986 16 Skin 0.17 protein_coding synonymous_variant LOW 1599A>G Glu533Glu
M0047531 IFDKNBCC_00007 5999 16 Skin 0.17 protein_coding missense_variant MODERATE 1612A>G Ser538Gly
M0047532 IFDKNBCC_00007 6004 16 Skin 0.17 protein_coding synonymous_variant LOW 1617C>T Gly539Gly
M0047533 IFDKNBCC_00007 6007 16 Skin 0.17 protein_coding synonymous_variant LOW 1620C>G Ala540Ala
M0047534 IFDKNBCC_00007 6010 16 Skin 0.17 protein_coding synonymous_variant LOW 1623C>G Pro541Pro
M0047535 IFDKNBCC_00007 6016 16 Skin 0.17 protein_coding synonymous_variant LOW 1629C>T Asn543Asn
M0047536 IFDKNBCC_00007 6025 16 Skin 0.17 protein_coding synonymous_variant LOW 1638A>G Ala546Ala
M0047537 IFDKNBCC_00007 6055 20 Skin 0.22 protein_coding synonymous_variant LOW 1668G>C Leu556Leu
M0047538 IFDKNBCC_00007 6058 20 Skin 0.22 protein_coding synonymous_variant LOW 1671C>A Ala557Ala
M0047539 IFDKNBCC_00007 6061 21 Skin 0.23 protein_coding synonymous_variant LOW 1674T>C Gly558Gly
M0047540 IFDKNBCC_00009 6908 31 Skin 0.33 protein_coding synonymous_variant LOW 216G>C Arg72Arg
M0047541 IFDKNBCC_00009 6932 31 Skin 0.33 protein_coding missense_variant MODERATE 192G>C Glu64Asp
M0047542 IFDKNBCC_00009 7085 30 Skin 0.32 protein_coding synonymous_variant LOW 39A>G Ala13Ala
M0047543 IFDKNBCC_00006 7908 37 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -3744C>G None
M0047544 IFDKNBCC_00006 7925 38 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -3761G>T None
M0047545 IFDKNBCC_00011 8404 32 Skin 0.34 protein_coding missense_variant MODERATE 1475A>C Lys492Thr
M0047546 IFDKNBCC_00011 8427 31 Skin 0.33 protein_coding synonymous_variant LOW 1452T>C Thr484Thr
M0047547 IFDKNBCC_00011 8511 29 Skin 0.31 protein_coding synonymous_variant LOW 1368T>C Asn456Asn
M0047548 IFDKNBCC_00011 8526 29 Skin 0.31 protein_coding synonymous_variant LOW 1353C>T Arg451Arg
M0047549 IFDKNBCC_00011 8541 29 Skin 0.31 protein_coding synonymous_variant LOW 1338G>C Thr446Thr
M0047550 IFDKNBCC_00011 8576 29 Skin 0.31 protein_coding synonymous_variant LOW 1303C>T Leu435Leu
M0047551 IFDKNBCC_00011 8577 29 Skin 0.31 protein_coding synonymous_variant LOW 1302C>T Ser434Ser
M0047552 IFDKNBCC_00011 8850 29 Skin 0.31 protein_coding synonymous_variant LOW 1029A>G Arg343Arg
M0047553 IFDKNBCC_00011 9150 39 Skin 0.42 protein_coding synonymous_variant LOW 729C>G Arg243Arg
M0047554 IFDKNBCC_00011 9168 39 Skin 0.42 protein_coding synonymous_variant LOW 711A>G Lys237Lys
M0047555 IFDKNBCC_00011 9183 39 Skin 0.42 protein_coding synonymous_variant LOW 696C>T Asn232Asn
M0047556 IFDKNBCC_00011 9246 36 Skin 0.39 protein_coding synonymous_variant LOW 633C>T Arg211Arg
M0047557 IFDKNBCC_00011 9429 30 Skin 0.32 protein_coding synonymous_variant LOW 450G>C Thr150Thr
M0047558 IFDKNBCC_00011 9462 29 Skin 0.31 protein_coding synonymous_variant LOW 417T>C Phe139Phe
M0047559 IFDKNBCC_00011 9837 13 Skin 0.14 protein_coding synonymous_variant LOW 42G>A Lys14Lys
M0047560 IFDKNBCC_00004 2744 4 Skin 0.04 protein_coding synonymous_variant LOW 549C>T Asp183Asp
M0047561 IFDKNBCC_00004 2762 4 Skin 0.04 protein_coding synonymous_variant LOW 567T>C Ala189Ala
M0047562 IFDKNBCC_00004 2768 4 Skin 0.04 protein_coding synonymous_variant LOW 573T>C Ala191Ala
M0047563 IFDKNBCC_00004 2789 4 Skin 0.04 protein_coding synonymous_variant LOW 594T>C Ser198Ser
M0047564 IFDKNBCC_00002 3093 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -2230C>A None
M0047565 IFDKNBCC_00005 3211 7 Skin 0.08 protein_coding missense_variant MODERATE 5T>C Leu2Pro
M0047566 IFDKNBCC_00005 3248 7 Skin 0.08 protein_coding synonymous_variant LOW 42A>G Leu14Leu
M0047567 IFDKNBCC_00005 3263 7 Skin 0.08 protein_coding synonymous_variant LOW 57T>C Thr19Thr
M0047568 IFDKNBCC_00005 3264 8 Skin 0.09 protein_coding missense_variant MODERATE 58T>G Ser20Ala
M0047569 IFDKNBCC_00005 3265 7 Skin 0.08 protein_coding missense_variant MODERATE 59C>T Ser20Phe
M0047570 IFDKNBCC_00005 3297 7 Skin 0.08 protein_coding missense_variant MODERATE 91G>A Glu31Lys
M0047571 IFDKNBCC_00005 3317 7 Skin 0.08 protein_coding synonymous_variant LOW 111G>A Ala37Ala
M0047572 IFDKNBCC_00005 3386 9 Skin 0.10 protein_coding synonymous_variant LOW 180C>G Ala60Ala
M0047573 IFDKNBCC_00005 3518 5 Skin 0.05 protein_coding synonymous_variant LOW 312A>C Ala104Ala
M0047574 IFDKNBCC_00005 3534 5 Skin 0.05 protein_coding missense_variant MODERATE 328C>T His110Tyr
M0047575 IFDKNBCC_00005 3542 5 Skin 0.05 protein_coding synonymous_variant LOW 336C>T Asp112Asp
M0047576 IFDKNBCC_00005 3560 5 Skin 0.05 protein_coding synonymous_variant LOW 354G>A Leu118Leu
M0047577 IFDKNBCC_00002 3602 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2739A>G None
M0047578 IFDKNBCC_00002 3617 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2754C>T None
M0047579 IFDKNBCC_00002 3625 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2762T>C None
M0047580 IFDKNBCC_00002 3633 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2770T>C None
M0047581 IFDKNBCC_00002 3634 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2771T>G None
M0047582 IFDKNBCC_00002 3649 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2786G>A None
M0047583 IFDKNBCC_00006 3744 5 Skin 0.05 protein_coding synonymous_variant LOW 421T>C Leu141Leu
M0047584 IFDKNBCC_00006 3745 5 Skin 0.05 protein_coding synonymous_variant LOW 420A>G Val140Val
M0047585 IFDKNBCC_00006 3746 5 Skin 0.05 protein_coding missense_variant MODERATE 419T>C Val140Ala
M0047586 IFDKNBCC_00006 3754 5 Skin 0.05 protein_coding synonymous_variant LOW 411A>C Val137Val
M0047587 IFDKNBCC_00007 5306 5 Skin 0.05 protein_coding missense_variant MODERATE 919G>A Ala307Thr
M0047588 IFDKNBCC_00011 9327 19 Skin 0.20 protein_coding synonymous_variant LOW 552T>G Leu184Leu
M0047589 IFDKNBCC_00011 9330 19 Skin 0.20 protein_coding synonymous_variant LOW 549T>C Asp183Asp
M0047590 IFDKNBCC_00011 9387 11 Skin 0.12 protein_coding synonymous_variant LOW 492A>G Ala164Ala
M0047591 IFDKNBCC_00011 9588 18 Skin 0.19 protein_coding synonymous_variant LOW 291C>G Pro97Pro
M0047592 IFDKNBCC_00011 9669 10 Skin 0.11 protein_coding synonymous_variant LOW 210G>T Ala70Ala
M0047593 IFDKNBCC_00011 9675 10 Skin 0.11 protein_coding synonymous_variant LOW 204T>C Ala68Ala
M0047594 IFDKNBCC_00011 9735 14 Skin 0.15 protein_coding synonymous_variant LOW 144C>T Phe48Phe
M0047595 IFDKNBCC_00011 9753 13 Skin 0.14 protein_coding synonymous_variant LOW 126C>T Ala42Ala
M0047596 IFDKNBCC_00011 9778 12 Skin 0.13 protein_coding missense_variant MODERATE 101G>A Arg34Lys
M0047597 IFDKNBCC_00011 8085 3 Skin 0.03 protein_coding synonymous_variant LOW 1794G>A Arg598Arg
M0047598 IFDKNBCC_00011 8646 19 Skin 0.20 protein_coding synonymous_variant LOW 1233C>T Arg411Arg
M0047599 IFDKNBCC_00011 9033 18 Skin 0.19 protein_coding synonymous_variant LOW 846T>C Ile282Ile
M0047600 IFDKNBCC_00007 5779 3 Skin 0.03 protein_coding synonymous_variant LOW 1392C>T Asp464Asp
M0047601 IFDKNBCC_00007 4627 10 Skin 0.11 protein_coding synonymous_variant LOW 240C>T His80His
M0047602 IFDKNBCC_00007 4657 10 Skin 0.11 protein_coding synonymous_variant LOW 270A>G Gly90Gly
M0047603 IFDKNBCC_00007 4658 9 Skin 0.10 protein_coding synonymous_variant LOW 271C>A Arg91Arg
M0047604 IFDKNBCC_00007 4678 9 Skin 0.10 protein_coding synonymous_variant LOW 291A>G Ala97Ala
M0047605 IFDKNBCC_00007 4777 8 Skin 0.09 protein_coding synonymous_variant LOW 390A>G Leu130Leu
M0047606 IFDKNBCC_00007 4786 6 Skin 0.06 protein_coding synonymous_variant LOW 399A>G Glu133Glu
M0047607 IFDKNBCC_00004 2988 5 Skin 0.05 protein_coding missense_variant MODERATE 793A>T Ser265Cys
M0047608 IFDKNBCC_00010 7728 3 Skin 0.03 protein_coding missense_variant MODERATE 160G>A Glu54Lys
M0047609 IFDKNBCC_00005 3449 4 Skin 0.04 protein_coding synonymous_variant LOW 243C>G Arg81Arg
M0047610 IFDKNBCC_00007 5371 5 Skin 0.05 protein_coding synonymous_variant LOW 984C>G Val328Val
M0047611 IFDKNBCC_00007 5372 5 Skin 0.05 protein_coding missense_variant MODERATE 985A>C Ile329Leu
M0047612 IFDKNBCC_00007 5383 5 Skin 0.05 protein_coding synonymous_variant LOW 996T>C His332His
M0047613 IFDKNBCC_00007 5389 5 Skin 0.05 protein_coding synonymous_variant LOW 1002C>T His334His
M0047614 IFDKNBCC_00007 5404 5 Skin 0.05 protein_coding synonymous_variant LOW 1017G>A Ala339Ala
M0047615 IFDKNBCC_00007 5410 5 Skin 0.05 protein_coding synonymous_variant LOW 1023A>G Leu341Leu
M0047616 IFDKNBCC_00007 5335 4 Skin 0.04 protein_coding synonymous_variant LOW 948T>C Asp316Asp
M0047617 IFDKNBCC_00007 5339 4 Skin 0.04 protein_coding missense_variant MODERATE 952G>A Val318Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term