Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2584
  Reference Plasmid   1111525849854017_bin.1__k141_13121
  Reference Plasmid Size   34307
  Reference Plasmid GC Content   0.60
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0047876 BNLHKGKM_00014 16507 10 Skin 0.08 protein_coding synonymous_variant LOW 342C>G Val114Val
M0047877 BNLHKGKM_00014 16528 8 Skin 0.06 protein_coding synonymous_variant LOW 321C>T Phe107Phe
M0047878 BNLHKGKM_00014 16734 8 Skin 0.06 protein_coding synonymous_variant LOW 115T>C Leu39Leu
M0047879 BNLHKGKM_00015 16984 12 Skin 0.09 protein_coding synonymous_variant LOW 685C>T Leu229Leu
M0047880 BNLHKGKM_00015 17129 20 Skin 0.15 protein_coding synonymous_variant LOW 540T>C Ala180Ala
M0047881 BNLHKGKM_00015 17456 12 Skin 0.09 protein_coding synonymous_variant LOW 213C>T Ser71Ser
M0047882 BNLHKGKM_00017 18786 21 Skin 0.16 protein_coding synonymous_variant LOW 1965C>T His655His
M0047883 BNLHKGKM_00017 18816 22 Skin 0.17 protein_coding synonymous_variant LOW 1935C>T Asp645Asp
M0047884 BNLHKGKM_00017 18840 21 Skin 0.16 protein_coding synonymous_variant LOW 1911G>A Ala637Ala
M0047885 BNLHKGKM_00017 18858 21 Skin 0.16 protein_coding synonymous_variant LOW 1893C>T Ile631Ile
M0047886 BNLHKGKM_00017 18876 21 Skin 0.16 protein_coding synonymous_variant LOW 1875C>T Gly625Gly
M0047887 BNLHKGKM_00017 20565 13 Skin 0.10 protein_coding synonymous_variant LOW 186A>G Ala62Ala
M0047888 BNLHKGKM_00018 21223 4 Skin 0.03 protein_coding synonymous_variant LOW 453T>G Leu151Leu
M0047889 BNLHKGKM_00018 21283 4 Skin 0.03 protein_coding synonymous_variant LOW 393T>C Ala131Ala
M0047890 BNLHKGKM_00018 21322 4 Skin 0.03 protein_coding synonymous_variant LOW 354C>T Gly118Gly
M0047891 BNLHKGKM_00018 21373 4 Skin 0.03 protein_coding synonymous_variant LOW 303T>C Phe101Phe
M0047892 BNLHKGKM_00018 21546 5 Skin 0.04 protein_coding missense_variant MODERATE 130G>A Asp44Asn
M0047893 BNLHKGKM_00018 21639 27 Skin 0.20 protein_coding missense_variant MODERATE 37C>G Pro13Ala
M0047894 BNLHKGKM_00014 16264 21 Skin 0.16 protein_coding synonymous_variant LOW 585C>T Thr195Thr
M0047895 BNLHKGKM_00014 16279 22 Skin 0.17 protein_coding synonymous_variant LOW 570T>C Ser190Ser
M0047896 BNLHKGKM_00014 16306 21 Skin 0.16 protein_coding synonymous_variant LOW 543C>T Arg181Arg
M0047897 BNLHKGKM_00014 16324 22 Skin 0.17 protein_coding synonymous_variant LOW 525T>C Gly175Gly
M0047898 BNLHKGKM_00015 17249 14 Skin 0.11 protein_coding synonymous_variant LOW 420G>A Ala140Ala
M0047899 BNLHKGKM_00015 17516 6 Skin 0.05 protein_coding synonymous_variant LOW 153T>C Asp51Asp
M0047900 BNLHKGKM_00016 18100 9 Skin 0.07 protein_coding synonymous_variant LOW 357C>G Pro119Pro
M0047901 BNLHKGKM_00016 18116 9 Skin 0.07 protein_coding missense_variant MODERATE 341G>A Ser114Asn
M0047902 BNLHKGKM_00017 19043 19 Skin 0.14 protein_coding missense_variant MODERATE 1708A>G Ile570Val
M0047903 BNLHKGKM_00017 19073 19 Skin 0.14 protein_coding missense_variant MODERATE 1678G>A Ala560Thr
M0047904 BNLHKGKM_00017 19092 19 Skin 0.14 protein_coding synonymous_variant LOW 1659T>C Arg553Arg
M0047905 BNLHKGKM_00017 19338 20 Skin 0.15 protein_coding synonymous_variant LOW 1413A>G Gln471Gln
M0047906 BNLHKGKM_00017 19356 18 Skin 0.14 protein_coding synonymous_variant LOW 1395A>G Gly465Gly
M0047907 BNLHKGKM_00017 19725 5 Skin 0.04 protein_coding synonymous_variant LOW 1026C>T Gly342Gly
M0047908 BNLHKGKM_00017 20250 17 Skin 0.13 protein_coding synonymous_variant LOW 501T>C His167His
M0047909 BNLHKGKM_00018 20928 12 Skin 0.09 protein_coding missense_variant MODERATE 748T>C Tyr250His
M0047910 BNLHKGKM_00018 20940 12 Skin 0.09 protein_coding missense_variant MODERATE 736G>A Val246Ile
M0047911 BNLHKGKM_00018 21486 8 Skin 0.06 protein_coding missense_variant MODERATE 190A>G Ile64Val
M0047912 BNLHKGKM_00019 22080 8 Skin 0.06 protein_coding missense_variant MODERATE 238G>A Ala80Thr
M0047913 BNLHKGKM_00019 22087 8 Skin 0.06 protein_coding synonymous_variant LOW 231C>T Val77Val
M0047914 BNLHKGKM_00003 4512 10 Skin 0.08 protein_coding synonymous_variant LOW 783C>T Arg261Arg
M0047915 BNLHKGKM_00003 4530 10 Skin 0.08 protein_coding synonymous_variant LOW 765C>T Arg255Arg
M0047916 BNLHKGKM_00003 4610 11 Skin 0.08 protein_coding missense_variant MODERATE 685A>G Thr229Ala
M0047917 BNLHKGKM_00003 4614 11 Skin 0.08 protein_coding synonymous_variant LOW 681G>T Gly227Gly
M0047918 BNLHKGKM_00003 4620 11 Skin 0.08 protein_coding synonymous_variant LOW 675T>C Arg225Arg
M0047919 BNLHKGKM_00003 4636 11 Skin 0.08 protein_coding missense_variant MODERATE 659G>A Gly220Asp
M0047920 BNLHKGKM_00003 4641 46 Skin 0.35 protein_coding synonymous_variant LOW 654A>C Ile218Ile
M0047921 BNLHKGKM_00003 4651 11 Skin 0.08 protein_coding missense_variant MODERATE 644G>A Arg215Gln
M0047922 BNLHKGKM_00003 4679 10 Skin 0.08 protein_coding synonymous_variant LOW 616T>C Leu206Leu
M0047923 BNLHKGKM_00003 4713 11 Skin 0.08 protein_coding synonymous_variant LOW 582A>G Glu194Glu
M0047924 BNLHKGKM_00003 4725 11 Skin 0.08 protein_coding synonymous_variant LOW 570A>C Ala190Ala
M0047925 BNLHKGKM_00003 4734 11 Skin 0.08 protein_coding synonymous_variant LOW 561G>A Ala187Ala
M0047926 BNLHKGKM_00003 4773 13 Skin 0.10 protein_coding synonymous_variant LOW 522A>G Lys174Lys
M0047927 BNLHKGKM_00003 4785 10 Skin 0.08 protein_coding synonymous_variant LOW 510G>A Glu170Glu
M0047928 BNLHKGKM_00003 4818 15 Skin 0.11 protein_coding synonymous_variant LOW 477A>G Gly159Gly
M0047929 BNLHKGKM_00003 4944 18 Skin 0.14 protein_coding synonymous_variant LOW 351C>T Phe117Phe
M0047930 BNLHKGKM_00003 4947 18 Skin 0.14 protein_coding synonymous_variant LOW 348C>T Asp116Asp
M0047931 BNLHKGKM_00003 4950 18 Skin 0.14 protein_coding synonymous_variant LOW 345C>T Arg115Arg
M0047932 BNLHKGKM_00003 4968 19 Skin 0.14 protein_coding synonymous_variant LOW 327A>G Glu109Glu
M0047933 BNLHKGKM_00003 5028 25 Skin 0.19 protein_coding synonymous_variant LOW 267T>G Leu89Leu
M0047934 BNLHKGKM_00003 5031 25 Skin 0.19 protein_coding synonymous_variant LOW 264T>C Ser88Ser
M0047935 BNLHKGKM_00003 5068 24 Skin 0.18 protein_coding missense_variant MODERATE 227C>A Ala76Asp
M0047936 BNLHKGKM_00003 5091 23 Skin 0.17 protein_coding missense_variant MODERATE 204C>G His68Gln
M0047937 BNLHKGKM_00003 5103 23 Skin 0.17 protein_coding synonymous_variant LOW 192C>T Ser64Ser
M0047938 BNLHKGKM_00004 6083 40 Skin 0.30 protein_coding synonymous_variant LOW 966T>C Arg322Arg
M0047939 BNLHKGKM_00004 6116 39 Skin 0.30 protein_coding synonymous_variant LOW 933C>A Val311Val
M0047940 BNLHKGKM_00004 6380 57 Skin 0.43 protein_coding synonymous_variant LOW 669G>A Glu223Glu
M0047941 BNLHKGKM_00004 6396 57 Skin 0.43 protein_coding missense_variant MODERATE 653A>C Asn218Thr
M0047942 BNLHKGKM_00004 6413 57 Skin 0.43 protein_coding synonymous_variant LOW 636G>A Leu212Leu
M0047943 BNLHKGKM_00004 6434 57 Skin 0.43 protein_coding synonymous_variant LOW 615A>C Thr205Thr
M0047944 BNLHKGKM_00004 6443 57 Skin 0.43 protein_coding missense_variant MODERATE 606A>C Lys202Asn
M0047945 BNLHKGKM_00004 6445 57 Skin 0.43 protein_coding missense_variant MODERATE 604A>C Lys202Gln
M0047946 BNLHKGKM_00004 6452 57 Skin 0.43 protein_coding synonymous_variant LOW 597G>A Ala199Ala
M0047947 BNLHKGKM_00004 6453 57 Skin 0.43 protein_coding missense_variant MODERATE 596C>A Ala199Glu
M0047948 BNLHKGKM_00004 6457 57 Skin 0.43 protein_coding missense_variant MODERATE 592G>A Asp198Asn
M0047949 BNLHKGKM_00004 6462 57 Skin 0.43 protein_coding missense_variant MODERATE 587C>T Pro196Leu
M0047950 BNLHKGKM_00004 6467 57 Skin 0.43 protein_coding synonymous_variant LOW 582G>C Leu194Leu
M0047951 BNLHKGKM_00004 6500 57 Skin 0.43 protein_coding synonymous_variant LOW 549G>C Leu183Leu
M0047952 BNLHKGKM_00004 6533 57 Skin 0.43 protein_coding synonymous_variant LOW 516A>G Ala172Ala
M0047953 BNLHKGKM_00004 6555 56 Skin 0.42 protein_coding missense_variant MODERATE 494A>G Asn165Ser
M0047954 BNLHKGKM_00004 6577 56 Skin 0.42 protein_coding missense_variant MODERATE 472C>A His158Asn
M0047955 BNLHKGKM_00004 6602 56 Skin 0.42 protein_coding synonymous_variant LOW 447G>A Leu149Leu
M0047956 BNLHKGKM_00004 6605 56 Skin 0.42 protein_coding synonymous_variant LOW 444T>C Ser148Ser
M0047957 BNLHKGKM_00004 6646 54 Skin 0.41 protein_coding missense_variant MODERATE 403G>A Ala135Thr
M0047958 BNLHKGKM_00004 6653 54 Skin 0.41 protein_coding synonymous_variant LOW 396A>G Ala132Ala
M0047959 BNLHKGKM_00002 2840 4 Skin 0.03 protein_coding missense_variant MODERATE 1436A>G His479Arg
M0047960 BNLHKGKM_00002 3385 9 Skin 0.07 protein_coding synonymous_variant LOW 891T>C Ser297Ser
M0047961 BNLHKGKM_00002 3388 9 Skin 0.07 protein_coding synonymous_variant LOW 888C>T Gly296Gly
M0047962 BNLHKGKM_00003 5238 38 Skin 0.29 protein_coding synonymous_variant LOW 57C>T Ile19Ile
M0047963 BNLHKGKM_00004 6002 23 Skin 0.17 protein_coding synonymous_variant LOW 1047A>G Arg349Arg
M0047964 BNLHKGKM_00005 7243 19 Skin 0.14 protein_coding missense_variant MODERATE 248G>A Arg83His
M0047965 BNLHKGKM_00005 7271 18 Skin 0.14 protein_coding missense_variant MODERATE 220G>C Gly74Arg
M0047966 BNLHKGKM_00005 7282 18 Skin 0.14 protein_coding missense_variant MODERATE 209C>T Ala70Val
M0047967 BNLHKGKM_00005 7298 18 Skin 0.14 protein_coding missense_variant MODERATE 193C>G Arg65Gly
M0047968 BNLHKGKM_00005 7305 18 Skin 0.14 protein_coding missense_variant MODERATE 186T>G His62Gln
M0047969 BNLHKGKM_00005 7334 17 Skin 0.13 protein_coding missense_variant MODERATE 157G>A Val53Met
M0047970 BNLHKGKM_00005 7404 13 Skin 0.10 protein_coding synonymous_variant LOW 87A>T Thr29Thr
M0047971 BNLHKGKM_00005 7407 13 Skin 0.10 protein_coding synonymous_variant LOW 84G>A Leu28Leu
M0047972 BNLHKGKM_00005 7410 13 Skin 0.10 protein_coding synonymous_variant LOW 81T>G Ala27Ala
M0047973 BNLHKGKM_00005 7419 13 Skin 0.10 protein_coding synonymous_variant LOW 72C>G Ala24Ala
M0047974 BNLHKGKM_00005 7440 12 Skin 0.09 protein_coding synonymous_variant LOW 51C>T Arg17Arg
M0047975 BNLHKGKM_00005 7443 12 Skin 0.09 protein_coding synonymous_variant LOW 48A>C Ser16Ser
M0047976 BNLHKGKM_00005 7449 12 Skin 0.09 protein_coding synonymous_variant LOW 42C>T Pro14Pro
M0047977 BNLHKGKM_00005 7488 13 Skin 0.10 protein_coding start_lost HIGH 3G>A Met1?
M0047978 BNLHKGKM_00005 7489 13 Skin 0.10 protein_coding start_lost HIGH 2T>C Met1?
M0047979 BNLHKGKM_00006 7501 13 Skin 0.10 protein_coding synonymous_variant LOW 588G>A Glu196Glu
M0047980 BNLHKGKM_00006 7503 13 Skin 0.10 protein_coding missense_variant MODERATE 586G>A Glu196Lys
M0047981 BNLHKGKM_00006 7504 13 Skin 0.10 protein_coding missense_variant MODERATE 585C>A Asp195Glu
M0047982 BNLHKGKM_00006 7512 13 Skin 0.10 protein_coding missense_variant MODERATE 577A>C Ile193Leu
M0047983 BNLHKGKM_00006 7546 13 Skin 0.10 protein_coding synonymous_variant LOW 543T>A Pro181Pro
M0047984 BNLHKGKM_00006 7561 13 Skin 0.10 protein_coding synonymous_variant LOW 528C>T Ile176Ile
M0047985 BNLHKGKM_00006 7563 13 Skin 0.10 protein_coding missense_variant MODERATE 526A>G Ile176Val
M0047986 BNLHKGKM_00006 7595 13 Skin 0.10 protein_coding missense_variant MODERATE 494G>A Arg165Gln
M0047987 BNLHKGKM_00006 7597 13 Skin 0.10 protein_coding synonymous_variant LOW 492C>G Val164Val
M0047988 BNLHKGKM_00006 7599 13 Skin 0.10 protein_coding missense_variant MODERATE 490G>C Val164Leu
M0047989 BNLHKGKM_00006 7629 12 Skin 0.09 protein_coding missense_variant MODERATE 460G>A Val154Ile
M0047990 BNLHKGKM_00006 7645 12 Skin 0.09 protein_coding synonymous_variant LOW 444G>A Gly148Gly
M0047991 BNLHKGKM_00006 7648 12 Skin 0.09 protein_coding synonymous_variant LOW 441T>C Ile147Ile
M0047992 BNLHKGKM_00006 7663 12 Skin 0.09 protein_coding synonymous_variant LOW 426C>A Arg142Arg
M0047993 BNLHKGKM_00006 7672 12 Skin 0.09 protein_coding synonymous_variant LOW 417A>T Gly139Gly
M0047994 BNLHKGKM_00006 7680 12 Skin 0.09 protein_coding synonymous_variant LOW 409C>T Leu137Leu
M0047995 BNLHKGKM_00006 7720 12 Skin 0.09 protein_coding synonymous_variant LOW 369C>T Leu123Leu
M0047996 BNLHKGKM_00006 7726 13 Skin 0.10 protein_coding synonymous_variant LOW 363A>G Glu121Glu
M0047997 BNLHKGKM_00006 7774 8 Skin 0.06 protein_coding synonymous_variant LOW 315G>A Pro105Pro
M0047998 BNLHKGKM_00006 7825 10 Skin 0.08 protein_coding synonymous_variant LOW 264T>C Gly88Gly
M0047999 BNLHKGKM_00007 8513 72 Skin 0.55 protein_coding missense_variant MODERATE 1492C>G Gln498Glu
M0048000 BNLHKGKM_00007 8526 72 Skin 0.55 protein_coding synonymous_variant LOW 1479T>C Ala493Ala
M0048001 BNLHKGKM_00007 9668 42 Skin 0.32 protein_coding missense_variant MODERATE 337C>G Pro113Ala
M0048002 BNLHKGKM_00009 10779 11 Skin 0.08 protein_coding synonymous_variant LOW 1128A>C Gly376Gly
M0048003 BNLHKGKM_00009 10821 12 Skin 0.09 protein_coding synonymous_variant LOW 1086T>C Asn362Asn
M0048004 BNLHKGKM_00009 11007 13 Skin 0.10 protein_coding synonymous_variant LOW 900G>C Gly300Gly
M0048005 BNLHKGKM_00009 11055 8 Skin 0.06 protein_coding synonymous_variant LOW 852G>T Arg284Arg
M0048006 BNLHKGKM_00009 11454 13 Skin 0.10 protein_coding synonymous_variant LOW 453C>T Phe151Phe
M0048007 BNLHKGKM_00009 11568 14 Skin 0.11 protein_coding synonymous_variant LOW 339A>G Lys113Lys
M0048008 BNLHKGKM_00009 11577 14 Skin 0.11 protein_coding synonymous_variant LOW 330A>G Glu110Glu
M0048009 BNLHKGKM_00009 11718 32 Skin 0.24 protein_coding synonymous_variant LOW 189G>A Ala63Ala
M0048010 BNLHKGKM_00009 11778 11 Skin 0.08 protein_coding synonymous_variant LOW 129C>A Val43Val
M0048011 BNLHKGKM_00009 11883 10 Skin 0.08 protein_coding synonymous_variant LOW 24T>C Val8Val
M0048012 BNLHKGKM_00007 14104 12 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4100C>T None
M0048013 BNLHKGKM_00007 14163 11 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4159T>G None
M0048014 BNLHKGKM_00007 14183 11 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4179A>G None
M0048015 BNLHKGKM_00007 14201 11 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4197T>C None
M0048016 BNLHKGKM_00004 5407 12 Skin 0.09 protein_coding missense_variant MODERATE 1642A>G Lys548Glu
M0048017 BNLHKGKM_00004 5411 12 Skin 0.09 protein_coding synonymous_variant LOW 1638T>C Ile546Ile
M0048018 BNLHKGKM_00004 5453 14 Skin 0.11 protein_coding synonymous_variant LOW 1596T>C Arg532Arg
M0048019 BNLHKGKM_00004 5825 40 Skin 0.30 protein_coding synonymous_variant LOW 1224C>T Leu408Leu
M0048020 BNLHKGKM_00004 5837 40 Skin 0.30 protein_coding synonymous_variant LOW 1212C>T Gly404Gly
M0048021 BNLHKGKM_00010 11950 9 Skin 0.07 protein_coding missense_variant MODERATE 490A>G Lys164Glu
M0048022 BNLHKGKM_00010 11960 9 Skin 0.07 protein_coding synonymous_variant LOW 480A>G Leu160Leu
M0048023 BNLHKGKM_00010 11968 8 Skin 0.06 protein_coding synonymous_variant LOW 472C>T Leu158Leu
M0048024 BNLHKGKM_00010 12083 16 Skin 0.12 protein_coding synonymous_variant LOW 357G>A Glu119Glu
M0048025 BNLHKGKM_00010 12092 16 Skin 0.12 protein_coding synonymous_variant LOW 348G>A Lys116Lys
M0048026 BNLHKGKM_00010 12107 16 Skin 0.12 protein_coding synonymous_variant LOW 333T>C Val111Val
M0048027 BNLHKGKM_00012 14641 11 Skin 0.08 protein_coding synonymous_variant LOW 660A>G Thr220Thr
M0048028 BNLHKGKM_00012 14656 11 Skin 0.08 protein_coding synonymous_variant LOW 645T>C Tyr215Tyr
M0048029 BNLHKGKM_00012 15048 12 Skin 0.09 protein_coding missense_variant MODERATE 253T>C Tyr85His
M0048030 BNLHKGKM_00012 15064 12 Skin 0.09 protein_coding synonymous_variant LOW 237A>G Gln79Gln
M0048031 BNLHKGKM_00012 15165 8 Skin 0.06 protein_coding missense_variant MODERATE 136A>C Ile46Leu
M0048032 BNLHKGKM_00017 20181 6 Skin 0.05 protein_coding synonymous_variant LOW 570C>T Gly190Gly
M0048033 BNLHKGKM_00017 20184 6 Skin 0.05 protein_coding synonymous_variant LOW 567C>T Ile189Ile
M0048034 BNLHKGKM_00013 20850 9 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4694G>A None
M0048035 BNLHKGKM_00013 20870 9 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4714C>T None
M0048036 BNLHKGKM_00004 5506 19 Skin 0.14 protein_coding missense_variant MODERATE 1543G>A Ala515Thr
M0048037 BNLHKGKM_00004 5537 19 Skin 0.14 protein_coding missense_variant MODERATE 1512C>G Asp504Glu
M0048038 BNLHKGKM_00004 5561 14 Skin 0.11 protein_coding synonymous_variant LOW 1488A>T Pro496Pro
M0048039 BNLHKGKM_00004 5564 14 Skin 0.11 protein_coding synonymous_variant LOW 1485A>G Leu495Leu
M0048040 BNLHKGKM_00004 5582 13 Skin 0.10 protein_coding synonymous_variant LOW 1467T>C Ile489Ile
M0048041 BNLHKGKM_00007 8847 16 Skin 0.12 protein_coding synonymous_variant LOW 1158A>G Pro386Pro
M0048042 BNLHKGKM_00007 8859 16 Skin 0.12 protein_coding synonymous_variant LOW 1146T>C Ala382Ala
M0048043 BNLHKGKM_00015 17057 12 Skin 0.09 protein_coding synonymous_variant LOW 612G>A Val204Val
M0048044 BNLHKGKM_00017 20634 12 Skin 0.09 protein_coding synonymous_variant LOW 117C>G Gly39Gly
M0048045 BNLHKGKM_00017 20655 12 Skin 0.09 protein_coding synonymous_variant LOW 96G>A Ala32Ala
M0048046 BNLHKGKM_00014 21788 7 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4940G>C None
M0048047 BNLHKGKM_00007 8580 20 Skin 0.15 protein_coding synonymous_variant LOW 1425T>C Thr475Thr
M0048048 BNLHKGKM_00007 8583 20 Skin 0.15 protein_coding synonymous_variant LOW 1422C>A Pro474Pro
M0048049 BNLHKGKM_00007 8619 21 Skin 0.16 protein_coding synonymous_variant LOW 1386T>C Ser462Ser
M0048050 BNLHKGKM_00007 8630 21 Skin 0.16 protein_coding missense_variant MODERATE 1375G>C Val459Leu
M0048051 BNLHKGKM_00008 10381 17 Skin 0.13 protein_coding missense_variant MODERATE 43T>G Ser15Ala
M0048052 BNLHKGKM_00011 13864 15 Skin 0.11 protein_coding synonymous_variant LOW 156C>A Gly52Gly
M0048053 BNLHKGKM_00011 13879 13 Skin 0.10 protein_coding synonymous_variant LOW 141A>G Leu47Leu
M0048054 BNLHKGKM_00012 14742 13 Skin 0.10 protein_coding missense_variant MODERATE 559C>G Pro187Ala
M0048055 BNLHKGKM_00012 14767 13 Skin 0.10 protein_coding synonymous_variant LOW 534T>C Val178Val
M0048056 BNLHKGKM_00008 15393 7 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4970C>A None
M0048057 BNLHKGKM_00008 15399 7 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4976G>T None
M0048058 BNLHKGKM_00016 18310 9 Skin 0.07 protein_coding synonymous_variant LOW 147C>T Phe49Phe
M0048059 BNLHKGKM_00017 19491 6 Skin 0.05 protein_coding synonymous_variant LOW 1260C>T Phe420Phe
M0048060 BNLHKGKM_00017 19532 5 Skin 0.04 protein_coding synonymous_variant LOW 1219C>T Leu407Leu
M0048061 BNLHKGKM_00017 19547 5 Skin 0.04 protein_coding synonymous_variant LOW 1204T>C Leu402Leu
M0048062 BNLHKGKM_00017 19632 8 Skin 0.06 protein_coding synonymous_variant LOW 1119C>T His373His
M0048063 BNLHKGKM_00017 20055 6 Skin 0.05 protein_coding synonymous_variant LOW 696G>A Val232Val
M0048064 BNLHKGKM_00015 22398 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4730G>A None
M0048065 BNLHKGKM_00015 22431 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4763A>G None
M0048066 BNLHKGKM_00007 8376 11 Skin 0.08 protein_coding synonymous_variant LOW 1629G>A Leu543Leu
M0048067 BNLHKGKM_00007 8390 11 Skin 0.08 protein_coding missense_variant MODERATE 1615G>T Ala539Ser
M0048068 BNLHKGKM_00007 8394 11 Skin 0.08 protein_coding synonymous_variant LOW 1611A>G Glu537Glu
M0048069 BNLHKGKM_00007 8397 11 Skin 0.08 protein_coding synonymous_variant LOW 1608T>C Ser536Ser
M0048070 BNLHKGKM_00007 8399 11 Skin 0.08 protein_coding missense_variant MODERATE 1606A>G Ser536Gly
M0048071 BNLHKGKM_00007 8406 11 Skin 0.08 protein_coding synonymous_variant LOW 1599A>G Pro533Pro
M0048072 BNLHKGKM_00007 8407 11 Skin 0.08 protein_coding missense_variant MODERATE 1598C>A Pro533Gln
M0048073 BNLHKGKM_00007 8409 11 Skin 0.08 protein_coding synonymous_variant LOW 1596C>T Arg532Arg
M0048074 BNLHKGKM_00007 8412 11 Skin 0.08 protein_coding missense_variant MODERATE 1593G>C Glu531Asp
M0048075 BNLHKGKM_00007 8418 11 Skin 0.08 protein_coding synonymous_variant LOW 1587C>T Ala529Ala
M0048076 BNLHKGKM_00007 8420 11 Skin 0.08 protein_coding missense_variant MODERATE 1585G>A Ala529Thr
M0048077 BNLHKGKM_00007 8427 11 Skin 0.08 protein_coding synonymous_variant LOW 1578C>G Gly526Gly
M0048078 BNLHKGKM_00007 8469 13 Skin 0.10 protein_coding missense_variant MODERATE 1536A>C Gln512His
M0048079 BNLHKGKM_00007 8798 13 Skin 0.10 protein_coding synonymous_variant LOW 1207T>C Leu403Leu
M0048080 BNLHKGKM_00008 10058 11 Skin 0.08 protein_coding synonymous_variant LOW 366T>C Phe122Phe
M0048081 BNLHKGKM_00012 14431 12 Skin 0.09 protein_coding missense_variant MODERATE 870T>G Phe290Leu
M0048082 BNLHKGKM_00013 15614 5 Skin 0.04 protein_coding synonymous_variant LOW 543A>G Glu181Glu
M0048083 BNLHKGKM_00004 6755 22 Skin 0.17 protein_coding synonymous_variant LOW 294G>T Pro98Pro
M0048084 BNLHKGKM_00002 3460 7 Skin 0.05 protein_coding synonymous_variant LOW 816G>A Lys272Lys
M0048085 BNLHKGKM_00002 3466 7 Skin 0.05 protein_coding synonymous_variant LOW 810A>G Glu270Glu
M0048086 BNLHKGKM_00002 3486 7 Skin 0.05 protein_coding synonymous_variant LOW 790C>T Leu264Leu
M0048087 BNLHKGKM_00002 3487 7 Skin 0.05 protein_coding synonymous_variant LOW 789T>C Arg263Arg
M0048088 BNLHKGKM_00002 3517 7 Skin 0.05 protein_coding synonymous_variant LOW 759C>T Gly253Gly
M0048089 BNLHKGKM_00002 3568 10 Skin 0.08 protein_coding synonymous_variant LOW 708A>G Ala236Ala
M0048090 BNLHKGKM_00007 8954 10 Skin 0.08 protein_coding missense_variant MODERATE 1051A>T Ile351Leu
M0048091 BNLHKGKM_00007 8956 10 Skin 0.08 protein_coding missense_variant MODERATE 1049A>G Asn350Ser
M0048092 BNLHKGKM_00007 9297 7 Skin 0.05 protein_coding synonymous_variant LOW 708A>G Val236Val
M0048093 BNLHKGKM_00007 9309 7 Skin 0.05 protein_coding synonymous_variant LOW 696A>G Ala232Ala
M0048094 BNLHKGKM_00007 9399 13 Skin 0.10 protein_coding synonymous_variant LOW 606G>A Glu202Glu
M0048095 BNLHKGKM_00007 9426 13 Skin 0.10 protein_coding synonymous_variant LOW 579A>C Thr193Thr
M0048096 BNLHKGKM_00007 9432 13 Skin 0.10 protein_coding synonymous_variant LOW 573T>C Asp191Asp
M0048097 BNLHKGKM_00007 9444 13 Skin 0.10 protein_coding synonymous_variant LOW 561C>T Cys187Cys
M0048098 BNLHKGKM_00007 9447 13 Skin 0.10 protein_coding synonymous_variant LOW 558A>G Arg186Arg
M0048099 BNLHKGKM_00007 9448 13 Skin 0.10 protein_coding missense_variant MODERATE 557G>A Arg186Gln
M0048100 BNLHKGKM_00007 9449 13 Skin 0.10 protein_coding synonymous_variant LOW 556C>A Arg186Arg
M0048101 BNLHKGKM_00007 9450 13 Skin 0.10 protein_coding synonymous_variant LOW 555G>A Glu185Glu
M0048102 BNLHKGKM_00007 9456 13 Skin 0.10 protein_coding synonymous_variant LOW 549C>G Val183Val
M0048103 BNLHKGKM_00007 9465 13 Skin 0.10 protein_coding synonymous_variant LOW 540C>T Asn180Asn
M0048104 BNLHKGKM_00007 9477 13 Skin 0.10 protein_coding synonymous_variant LOW 528C>T Asn176Asn
M0048105 BNLHKGKM_00007 9501 14 Skin 0.11 protein_coding synonymous_variant LOW 504T>C Gly168Gly
M0048106 BNLHKGKM_00008 10196 10 Skin 0.08 protein_coding synonymous_variant LOW 228G>A Glu76Glu
M0048107 BNLHKGKM_00011 12731 12 Skin 0.09 protein_coding missense_variant MODERATE 1289G>A Arg430His
M0048108 BNLHKGKM_00011 13726 9 Skin 0.07 protein_coding synonymous_variant LOW 294C>T Val98Val
M0048109 BNLHKGKM_00012 14991 9 Skin 0.07 protein_coding missense_variant MODERATE 310G>T Val104Leu
M0048110 BNLHKGKM_00011 13684 5 Skin 0.04 protein_coding synonymous_variant LOW 336G>C Pro112Pro
M0048111 BNLHKGKM_00013 15449 7 Skin 0.05 protein_coding synonymous_variant LOW 708T>C Phe236Phe
M0048112 BNLHKGKM_00013 15569 5 Skin 0.04 protein_coding synonymous_variant LOW 588C>A Thr196Thr
M0048113 BNLHKGKM_00016 18367 5 Skin 0.04 protein_coding synonymous_variant LOW 90C>T Ala30Ala
M0048114 BNLHKGKM_00002 2200 6 Skin 0.05 protein_coding synonymous_variant LOW 2076A>G Gln692Gln
M0048115 BNLHKGKM_00002 2386 6 Skin 0.05 protein_coding synonymous_variant LOW 1890C>T Thr630Thr
M0048116 BNLHKGKM_00002 2428 6 Skin 0.05 protein_coding synonymous_variant LOW 1848T>C Leu616Leu
M0048117 BNLHKGKM_00002 2578 5 Skin 0.04 protein_coding synonymous_variant LOW 1698G>A Leu566Leu
M0048118 BNLHKGKM_00002 2589 5 Skin 0.04 protein_coding missense_variant MODERATE 1687G>T Ala563Ser
M0048119 BNLHKGKM_00002 2623 5 Skin 0.04 protein_coding synonymous_variant LOW 1653A>G Leu551Leu
M0048120 BNLHKGKM_00002 2659 5 Skin 0.04 protein_coding synonymous_variant LOW 1617A>G Val539Val
M0048121 BNLHKGKM_00002 2665 5 Skin 0.04 protein_coding synonymous_variant LOW 1611C>T Ala537Ala
M0048122 BNLHKGKM_00002 2731 5 Skin 0.04 protein_coding synonymous_variant LOW 1545A>C Ala515Ala
M0048123 BNLHKGKM_00002 2742 5 Skin 0.04 protein_coding missense_variant MODERATE 1534A>G Thr512Ala
M0048124 BNLHKGKM_00002 2746 5 Skin 0.04 protein_coding synonymous_variant LOW 1530G>A Leu510Leu
M0048125 BNLHKGKM_00002 2754 5 Skin 0.04 protein_coding missense_variant MODERATE 1522G>T Ala508Ser
M0048126 BNLHKGKM_00002 2776 5 Skin 0.04 protein_coding synonymous_variant LOW 1500G>C Ala500Ala
M0048127 BNLHKGKM_00002 3040 3 Skin 0.02 protein_coding synonymous_variant LOW 1236T>C Ala412Ala
M0048128 BNLHKGKM_00002 3862 4 Skin 0.03 protein_coding synonymous_variant LOW 414C>T Asp138Asp
M0048129 BNLHKGKM_00009 11343 7 Skin 0.05 protein_coding synonymous_variant LOW 564G>C Pro188Pro
M0048130 BNLHKGKM_00009 11349 8 Skin 0.06 protein_coding synonymous_variant LOW 558T>C His186His
M0048131 BNLHKGKM_00009 11400 6 Skin 0.05 protein_coding synonymous_variant LOW 507G>C Ala169Ala
M0048132 BNLHKGKM_00012 14829 8 Skin 0.06 protein_coding missense_variant MODERATE 472G>C Glu158Gln
M0048133 BNLHKGKM_00007 9951 14 Skin 0.11 protein_coding synonymous_variant LOW 54G>A Thr18Thr
M0048134 BNLHKGKM_00007 9537 15 Skin 0.11 protein_coding missense_variant MODERATE 468T>G His156Gln
M0048135 BNLHKGKM_00009 11277 9 Skin 0.07 protein_coding synonymous_variant LOW 630G>A Lys210Lys
M0048136 BNLHKGKM_00009 11280 9 Skin 0.07 protein_coding synonymous_variant LOW 627G>C Leu209Leu
M0048137 BNLHKGKM_00002 2341 5 Skin 0.04 protein_coding synonymous_variant LOW 1935C>T Arg645Arg
M0048138 BNLHKGKM_00002 2479 5 Skin 0.04 protein_coding synonymous_variant LOW 1797T>C Gly599Gly
M0048139 BNLHKGKM_00004 6827 15 Skin 0.11 protein_coding synonymous_variant LOW 222A>G Leu74Leu
M0048140 BNLHKGKM_00004 6866 18 Skin 0.14 protein_coding synonymous_variant LOW 183C>T Asp61Asp
M0048141 BNLHKGKM_00008 10346 3 Skin 0.02 protein_coding synonymous_variant LOW 78G>A Ala26Ala
M0048142 BNLHKGKM_00008 10385 3 Skin 0.02 protein_coding synonymous_variant LOW 39T>C Gly13Gly
M0048143 BNLHKGKM_00003 4389 11 Skin 0.08 protein_coding synonymous_variant LOW 906G>A Glu302Glu
M0048144 BNLHKGKM_00002 2095 3 Skin 0.02 protein_coding missense_variant MODERATE 2181G>T Arg727Ser
M0048145 BNLHKGKM_00015 22516 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4848A>G None
M0048146 BNLHKGKM_00010 12038 11 Skin 0.08 protein_coding synonymous_variant LOW 402T>C Ala134Ala
M0048147 BNLHKGKM_00007 9012 5 Skin 0.04 protein_coding synonymous_variant LOW 993C>T Ala331Ala
M0048148 BNLHKGKM_00007 9579 5 Skin 0.04 protein_coding synonymous_variant LOW 426T>G Val142Val
M0048149 BNLHKGKM_00007 9581 5 Skin 0.04 protein_coding missense_variant MODERATE 424G>C Val142Leu
M0048150 BNLHKGKM_00007 9585 5 Skin 0.04 protein_coding missense_variant MODERATE 420G>C Leu140Phe
M0048151 BNLHKGKM_00007 9588 5 Skin 0.04 protein_coding synonymous_variant LOW 417A>G Pro139Pro
M0048152 BNLHKGKM_00006 7849 3 Skin 0.02 protein_coding synonymous_variant LOW 240A>G Gly80Gly
M0048153 BNLHKGKM_00006 7852 3 Skin 0.02 protein_coding synonymous_variant LOW 237A>G Ala79Ala
M0048154 BNLHKGKM_00006 7861 3 Skin 0.02 protein_coding synonymous_variant LOW 228A>G Glu76Glu
M0048155 BNLHKGKM_00006 7863 3 Skin 0.02 protein_coding missense_variant MODERATE 226G>A Glu76Lys
M0048156 BNLHKGKM_00006 7864 3 Skin 0.02 protein_coding synonymous_variant LOW 225T>C Pro75Pro
M0048157 BNLHKGKM_00006 7874 3 Skin 0.02 protein_coding missense_variant MODERATE 215G>A Ser72Asn
M0048158 BNLHKGKM_00006 7875 3 Skin 0.02 protein_coding missense_variant MODERATE 214A>G Ser72Gly
M0048159 BNLHKGKM_00006 7885 3 Skin 0.02 protein_coding synonymous_variant LOW 204C>A Ser68Ser
M0048160 BNLHKGKM_00006 7887 3 Skin 0.02 protein_coding missense_variant MODERATE 202T>A Ser68Thr
M0048161 BNLHKGKM_00006 7888 3 Skin 0.02 protein_coding synonymous_variant LOW 201C>T Tyr67Tyr
M0048162 BNLHKGKM_00006 7894 3 Skin 0.02 protein_coding synonymous_variant LOW 195T>G Pro65Pro
M0048163 BNLHKGKM_00006 7899 3 Skin 0.02 protein_coding missense_variant MODERATE 190A>G Ile64Val
M0048164 BNLHKGKM_00006 7929 3 Skin 0.02 protein_coding missense_variant MODERATE 160G>A Gly54Arg
M0048165 BNLHKGKM_00006 7932 3 Skin 0.02 protein_coding synonymous_variant LOW 157A>C Arg53Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
BNLHKGKM_00002 VFG041020 HSI-2 78.9 0 1 863 1.0 0.984 Effector delivery system type VI secretion system ATPase TssH experiment
BNLHKGKM_00003 VFG041019 HSI-2 79.7 1.6e-157 1 335 1.0 1 Effector delivery system type VI secretion system baseplate subunit TssG experiment
BNLHKGKM_00004 VFG041018 HSI-2 74.6 8.3e-242 70 596 0.8842 1.0019 Effector delivery system type VI secretion system baseplate subunit TssF experiment
BNLHKGKM_00008 VFG041017 HSI-2 82.8 1.1e-56 1 134 0.9926 0.9926 Effector delivery system type VI secretion system baseplate subunit TssE experiment
BNLHKGKM_00009 VFG041016 HSI-2 86.8 3.4e-257 1 492 1.0 1.002 Effector delivery system type VI secretion system contractile sheath large subunit experiment
BNLHKGKM_00010 VFG041015 HSI-2 82.7 4.2e-74 1 168 1.0 1 Effector delivery system type VI secretion system contractile sheath small subunit experiment
BNLHKGKM_00002 VFG051556 HSI-2 77.3 0 1 863 1.0 0.9751 Effector delivery system type VI secretion system ATPase TssH prediction
BNLHKGKM_00003 VFG051543 HSI-2 80 7e-157 1 335 1.0 1 Effector delivery system type VI secretion system baseplate subunit TssG prediction
BNLHKGKM_00004 VFG051540 HSI-2 78 2.7e-284 1 596 1.0 1.0017 Effector delivery system type VI secretion system baseplate subunit TssF prediction
BNLHKGKM_00008 VFG041017 HSI-2 82.8 8.1e-56 1 134 0.9926 0.9926 Effector delivery system type VI secretion system baseplate subunit TssE prediction
BNLHKGKM_00009 VFG051523 HSI-2 89 6.9e-262 4 492 0.9939 0.998 Effector delivery system type VI secretion system contractile sheath large subunit prediction
BNLHKGKM_00010 VFG041015 HSI-2 82.7 3.1e-73 1 168 1.0 1 Effector delivery system type VI secretion system contractile sheath small subunit prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
BNLHKGKM_00014 3.A.1.3.23 71.6 8e-91 1 229 0.9913 0.8911 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
BNLHKGKM_00015 3.A.1.3.23 81.3 4.6e-116 1 251 1.0000 0.9728 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
BNLHKGKM_00016 3.A.1.3.23 89.1 4.8e-129 1 257 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily