Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2608
  Reference Plasmid   1111525849857514_bin.27__k141_208511
  Reference Plasmid Size   10267
  Reference Plasmid GC Content   0.62
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0048770 MOPFJDOF_00004 942 5 Skin 0.50 protein_coding missense_variant MODERATE 64G>A Gly22Ser
M0048771 MOPFJDOF_00004 1175 7 Skin 0.70 protein_coding synonymous_variant LOW 297A>C Leu99Leu
M0048772 MOPFJDOF_00004 1511 6 Skin 0.60 protein_coding synonymous_variant LOW 633T>C Phe211Phe
M0048773 MOPFJDOF_00004 2711 3 Skin 0.30 protein_coding synonymous_variant LOW 1833G>A Glu611Glu
M0048774 MOPFJDOF_00004 2726 3 Skin 0.30 protein_coding synonymous_variant LOW 1848C>T Tyr616Tyr
M0048775 MOPFJDOF_00006 4160 3 Skin 0.30 protein_coding synonymous_variant LOW 267C>T His89His
M0048776 MOPFJDOF_00006 4202 4 Skin 0.40 protein_coding synonymous_variant LOW 309A>G Gln103Gln
M0048777 MOPFJDOF_00006 4226 3 Skin 0.30 protein_coding synonymous_variant LOW 333A>G Lys111Lys
M0048778 MOPFJDOF_00006 4442 3 Skin 0.30 protein_coding synonymous_variant LOW 549G>A Lys183Lys
M0048779 MOPFJDOF_00007 4595 3 Skin 0.30 protein_coding synonymous_variant LOW 525T>C Gly175Gly
M0048780 MOPFJDOF_00001 164 5 Skin 0.50 protein_coding synonymous_variant LOW 39C>T Ala13Ala
M0048781 MOPFJDOF_00004 1941 4 Skin 0.40 protein_coding synonymous_variant LOW 1063T>C Leu355Leu
M0048782 MOPFJDOF_00004 2771 3 Skin 0.30 protein_coding synonymous_variant LOW 1893T>C Gly631Gly
M0048783 MOPFJDOF_00006 4310 3 Skin 0.30 protein_coding synonymous_variant LOW 417C>G Ala139Ala
M0048784 MOPFJDOF_00010 7654 3 Skin 0.30 protein_coding synonymous_variant LOW 628T>C Leu210Leu
M0048785 MOPFJDOF_00010 7663 3 Skin 0.30 protein_coding missense_variant MODERATE 637C>T Pro213Ser
M0048786 MOPFJDOF_00010 7668 3 Skin 0.30 protein_coding synonymous_variant LOW 642G>A Val214Val
M0048787 MOPFJDOF_00004 2853 4 Skin 0.40 protein_coding synonymous_variant LOW 1975T>C Leu659Leu
M0048788 MOPFJDOF_00004 1922 3 Skin 0.30 protein_coding synonymous_variant LOW 1044G>A Ser348Ser
M0048789 MOPFJDOF_00004 1925 3 Skin 0.30 protein_coding synonymous_variant LOW 1047C>T Gly349Gly
M0048790 MOPFJDOF_00004 1950 3 Skin 0.30 protein_coding synonymous_variant LOW 1072C>T Leu358Leu
M0048791 MOPFJDOF_00004 995 4 Skin 0.40 protein_coding synonymous_variant LOW 117C>T Thr39Thr
M0048792 MOPFJDOF_00004 1013 4 Skin 0.40 protein_coding synonymous_variant LOW 135A>G Lys45Lys
M0048793 MOPFJDOF_00004 1058 5 Skin 0.50 protein_coding synonymous_variant LOW 180G>A Ala60Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
MOPFJDOF_00008 PHI:8637 CspB (WP_011408744.1) 75.4 1.6e-26 1 69 1.0000 1.0000 monocots bacterial leaf blight cold-shock protein unaffected pathogenicity






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term