Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2609
  Reference Plasmid   1111525849857514_bin.27__k141_347381
  Reference Plasmid Size   6983
  Reference Plasmid GC Content   0.65
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0048794 AAIGBHAN_00003 2315 21 Skin 0.57 protein_coding synonymous_variant LOW 186A>C Pro62Pro
M0048795 AAIGBHAN_00004 4077 11 Skin 0.30 protein_coding missense_variant MODERATE 61G>T Val21Leu
M0048796 AAIGBHAN_00005 5247 9 Skin 0.24 protein_coding synonymous_variant LOW 168T>C Asn56Asn
M0048797 AAIGBHAN_00005 5286 6 Skin 0.16 protein_coding synonymous_variant LOW 129T>C Gly43Gly
M0048798 AAIGBHAN_00005 5302 11 Skin 0.30 protein_coding missense_variant MODERATE 113C>G Ala38Gly
M0048799 AAIGBHAN_00005 5304 6 Skin 0.16 protein_coding synonymous_variant LOW 111C>A Val37Val
M0048800 AAIGBHAN_00005 5310 6 Skin 0.16 protein_coding synonymous_variant LOW 105T>C Ile35Ile
M0048801 AAIGBHAN_00005 5319 6 Skin 0.16 protein_coding synonymous_variant LOW 96G>A Glu32Glu
M0048802 AAIGBHAN_00005 5328 6 Skin 0.16 protein_coding synonymous_variant LOW 87C>T Asp29Asp
M0048803 AAIGBHAN_00005 5352 6 Skin 0.16 protein_coding synonymous_variant LOW 63C>G Leu21Leu
M0048804 AAIGBHAN_00005 5385 7 Skin 0.19 protein_coding missense_variant MODERATE 30A>T Gln10His
M0048805 AAIGBHAN_00001 5419 7 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4489C>T None
M0048806 AAIGBHAN_00006 5450 7 Skin 0.19 protein_coding synonymous_variant LOW 819C>G Leu273Leu
M0048807 AAIGBHAN_00006 5486 6 Skin 0.16 protein_coding synonymous_variant LOW 783T>C Val261Val
M0048808 AAIGBHAN_00006 5504 6 Skin 0.16 protein_coding synonymous_variant LOW 765C>T Gly255Gly
M0048809 AAIGBHAN_00006 5510 6 Skin 0.16 protein_coding synonymous_variant LOW 759T>C Ile253Ile
M0048810 AAIGBHAN_00006 5561 4 Skin 0.11 protein_coding synonymous_variant LOW 708T>C Asn236Asn
M0048811 AAIGBHAN_00006 5564 4 Skin 0.11 protein_coding synonymous_variant LOW 705C>G Val235Val
M0048812 AAIGBHAN_00006 5579 4 Skin 0.11 protein_coding synonymous_variant LOW 690G>A Ala230Ala
M0048813 AAIGBHAN_00006 5591 4 Skin 0.11 protein_coding synonymous_variant LOW 678C>G Pro226Pro
M0048814 AAIGBHAN_00006 5618 4 Skin 0.11 protein_coding synonymous_variant LOW 651G>T Val217Val
M0048815 AAIGBHAN_00006 5624 4 Skin 0.11 protein_coding synonymous_variant LOW 645T>C Phe215Phe
M0048816 AAIGBHAN_00006 5717 3 Skin 0.08 protein_coding synonymous_variant LOW 552C>T Thr184Thr
M0048817 AAIGBHAN_00006 5732 3 Skin 0.08 protein_coding synonymous_variant LOW 537C>T Gly179Gly
M0048818 AAIGBHAN_00006 5735 3 Skin 0.08 protein_coding synonymous_variant LOW 534T>C Asp178Asp
M0048819 AAIGBHAN_00006 5744 3 Skin 0.08 protein_coding synonymous_variant LOW 525A>G Ala175Ala
M0048820 AAIGBHAN_00006 5750 3 Skin 0.08 protein_coding synonymous_variant LOW 519G>C Arg173Arg
M0048821 AAIGBHAN_00006 5762 3 Skin 0.08 protein_coding missense_variant MODERATE 507A>T Glu169Asp
M0048822 AAIGBHAN_00006 5798 3 Skin 0.08 protein_coding synonymous_variant LOW 471A>G Thr157Thr
M0048823 AAIGBHAN_00006 5807 3 Skin 0.08 protein_coding synonymous_variant LOW 462G>C Ala154Ala
M0048824 AAIGBHAN_00006 5813 3 Skin 0.08 protein_coding synonymous_variant LOW 456C>G Gly152Gly
M0048825 AAIGBHAN_00006 5819 3 Skin 0.08 protein_coding synonymous_variant LOW 450A>C Val150Val
M0048826 AAIGBHAN_00006 5825 9 Skin 0.24 protein_coding synonymous_variant LOW 444T>C His148His
M0048827 AAIGBHAN_00006 5828 3 Skin 0.08 protein_coding synonymous_variant LOW 441G>C Val147Val
M0048828 AAIGBHAN_00006 5840 3 Skin 0.08 protein_coding synonymous_variant LOW 429T>C Gly143Gly
M0048829 AAIGBHAN_00006 5864 3 Skin 0.08 protein_coding synonymous_variant LOW 405G>C Leu135Leu
M0048830 AAIGBHAN_00006 6011 3 Skin 0.08 protein_coding synonymous_variant LOW 258T>C Ile86Ile
M0048831 AAIGBHAN_00004 3130 12 Skin 0.32 protein_coding synonymous_variant LOW 1008C>G Leu336Leu
M0048832 AAIGBHAN_00002 1147 8 Skin 0.22 protein_coding missense_variant MODERATE 61A>C Thr21Pro
M0048833 AAIGBHAN_00002 1189 9 Skin 0.24 protein_coding missense_variant MODERATE 103G>C Val35Leu
M0048834 AAIGBHAN_00002 1231 12 Skin 0.32 protein_coding synonymous_variant LOW 145T>C Leu49Leu
M0048835 AAIGBHAN_00003 2660 9 Skin 0.24 protein_coding synonymous_variant LOW 531A>G Ala177Ala
M0048836 AAIGBHAN_00003 2663 9 Skin 0.24 protein_coding synonymous_variant LOW 534A>G Pro178Pro
M0048837 AAIGBHAN_00004 3196 9 Skin 0.24 protein_coding missense_variant MODERATE 942G>C Glu314Asp
M0048838 AAIGBHAN_00004 3382 10 Skin 0.27 protein_coding synonymous_variant LOW 756C>T Gly252Gly
M0048839 AAIGBHAN_00004 3400 10 Skin 0.27 protein_coding synonymous_variant LOW 738C>T Gly246Gly
M0048840 AAIGBHAN_00004 3424 13 Skin 0.35 protein_coding synonymous_variant LOW 714T>C Thr238Thr
M0048841 AAIGBHAN_00003 2435 11 Skin 0.30 protein_coding synonymous_variant LOW 306T>C Ser102Ser
M0048842 AAIGBHAN_00003 2768 9 Skin 0.24 protein_coding synonymous_variant LOW 639A>G Ala213Ala
M0048843 AAIGBHAN_00005 4739 11 Skin 0.30 protein_coding missense_variant MODERATE 676G>A Asp226Asn
M0048844 AAIGBHAN_00005 4749 11 Skin 0.30 protein_coding synonymous_variant LOW 666A>G Glu222Glu
M0048845 AAIGBHAN_00005 4755 10 Skin 0.27 protein_coding synonymous_variant LOW 660G>C Pro220Pro
M0048846 AAIGBHAN_00005 4758 11 Skin 0.30 protein_coding synonymous_variant LOW 657G>C Thr219Thr
M0048847 AAIGBHAN_00005 4782 11 Skin 0.30 protein_coding synonymous_variant LOW 633T>C Asp211Asp
M0048848 AAIGBHAN_00005 4818 11 Skin 0.30 protein_coding synonymous_variant LOW 597G>A Ala199Ala
M0048849 AAIGBHAN_00005 4830 11 Skin 0.30 protein_coding synonymous_variant LOW 585T>C Asp195Asp
M0048850 AAIGBHAN_00005 4833 11 Skin 0.30 protein_coding synonymous_variant LOW 582C>T His194His
M0048851 AAIGBHAN_00005 4842 11 Skin 0.30 protein_coding synonymous_variant LOW 573C>T Tyr191Tyr
M0048852 AAIGBHAN_00005 4857 11 Skin 0.30 protein_coding synonymous_variant LOW 558G>A Lys186Lys
M0048853 AAIGBHAN_00005 4863 11 Skin 0.30 protein_coding synonymous_variant LOW 552C>G Arg184Arg
M0048854 AAIGBHAN_00005 4887 12 Skin 0.32 protein_coding synonymous_variant LOW 528C>A Thr176Thr
M0048855 AAIGBHAN_00005 4928 11 Skin 0.30 protein_coding synonymous_variant LOW 487C>T Leu163Leu
M0048856 AAIGBHAN_00005 4962 11 Skin 0.30 protein_coding synonymous_variant LOW 453A>G Ala151Ala
M0048857 AAIGBHAN_00005 4974 10 Skin 0.27 protein_coding synonymous_variant LOW 441T>G Gly147Gly
M0048858 AAIGBHAN_00005 4998 10 Skin 0.27 protein_coding synonymous_variant LOW 417C>T Gly139Gly
M0048859 AAIGBHAN_00005 5001 11 Skin 0.30 protein_coding synonymous_variant LOW 414T>C Gly138Gly
M0048860 AAIGBHAN_00005 5004 9 Skin 0.24 protein_coding synonymous_variant LOW 411C>T Ser137Ser
M0048861 AAIGBHAN_00005 5010 11 Skin 0.30 protein_coding synonymous_variant LOW 405G>A Gln135Gln
M0048862 AAIGBHAN_00005 5025 11 Skin 0.30 protein_coding synonymous_variant LOW 390G>A Glu130Glu
M0048863 AAIGBHAN_00005 5028 11 Skin 0.30 protein_coding synonymous_variant LOW 387C>G Leu129Leu
M0048864 AAIGBHAN_00005 5037 11 Skin 0.30 protein_coding synonymous_variant LOW 378G>A Glu126Glu
M0048865 AAIGBHAN_00005 5064 11 Skin 0.30 protein_coding synonymous_variant LOW 351G>A Ala117Ala
M0048866 AAIGBHAN_00005 5130 8 Skin 0.22 protein_coding synonymous_variant LOW 285C>T Arg95Arg
M0048867 AAIGBHAN_00005 5157 8 Skin 0.22 protein_coding synonymous_variant LOW 258C>T Tyr86Tyr
M0048868 AAIGBHAN_00005 5178 6 Skin 0.16 protein_coding synonymous_variant LOW 237C>T Ile79Ile
M0048869 AAIGBHAN_00005 5184 6 Skin 0.16 protein_coding synonymous_variant LOW 231C>G Arg77Arg
M0048870 AAIGBHAN_00005 5196 6 Skin 0.16 protein_coding synonymous_variant LOW 219C>T Ser73Ser
M0048871 AAIGBHAN_00005 5205 5 Skin 0.14 protein_coding synonymous_variant LOW 210C>T Ser70Ser
M0048872 AAIGBHAN_00002 1522 5 Skin 0.14 protein_coding missense_variant MODERATE 436A>G Ile146Val
M0048873 AAIGBHAN_00002 1639 4 Skin 0.11 protein_coding synonymous_variant LOW 553C>T Leu185Leu
M0048874 AAIGBHAN_00003 2709 9 Skin 0.24 protein_coding missense_variant MODERATE 580G>A Val194Ile
M0048875 AAIGBHAN_00004 2988 12 Skin 0.32 protein_coding synonymous_variant LOW 1150T>C Leu384Leu
M0048876 AAIGBHAN_00002 1752 10 Skin 0.27 protein_coding synonymous_variant LOW 666C>T Ile222Ile
M0048877 AAIGBHAN_00002 1755 10 Skin 0.27 protein_coding synonymous_variant LOW 669C>T Ser223Ser
M0048878 AAIGBHAN_00002 1770 10 Skin 0.27 protein_coding synonymous_variant LOW 684C>T Asp228Asp
M0048879 AAIGBHAN_00002 1797 10 Skin 0.27 protein_coding synonymous_variant LOW 711T>C Asn237Asn
M0048880 AAIGBHAN_00002 1806 9 Skin 0.24 protein_coding synonymous_variant LOW 720G>A Ala240Ala
M0048881 AAIGBHAN_00002 1836 13 Skin 0.35 protein_coding synonymous_variant LOW 750A>G Gln250Gln
M0048882 AAIGBHAN_00004 3925 13 Skin 0.35 protein_coding synonymous_variant LOW 213T>G Leu71Leu
M0048883 AAIGBHAN_00001 268 4 Skin 0.11 protein_coding synonymous_variant LOW 663C>A Ile221Ile
M0048884 AAIGBHAN_00001 287 4 Skin 0.11 protein_coding missense_variant MODERATE 644C>T Pro215Leu
M0048885 AAIGBHAN_00001 301 4 Skin 0.11 protein_coding synonymous_variant LOW 630C>A Ala210Ala
M0048886 AAIGBHAN_00002 1959 10 Skin 0.27 protein_coding synonymous_variant LOW 873C>T Tyr291Tyr
M0048887 AAIGBHAN_00002 1986 11 Skin 0.30 protein_coding synonymous_variant LOW 900G>C Arg300Arg
M0048888 AAIGBHAN_00002 1990 12 Skin 0.32 protein_coding synonymous_variant LOW 904C>T Leu302Leu
M0048889 AAIGBHAN_00002 2016 12 Skin 0.32 protein_coding synonymous_variant LOW 930A>G Leu310Leu
M0048890 AAIGBHAN_00004 6956 3 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -2819A>G None
M0048891 AAIGBHAN_00001 553 5 Skin 0.14 protein_coding synonymous_variant LOW 378T>C Ser126Ser
M0048892 AAIGBHAN_00001 694 5 Skin 0.14 protein_coding synonymous_variant LOW 237T>C Cys79Cys
M0048893 AAIGBHAN_00001 835 5 Skin 0.14 protein_coding synonymous_variant LOW 96C>T Pro32Pro
M0048894 AAIGBHAN_00001 838 5 Skin 0.14 protein_coding synonymous_variant LOW 93A>G Pro31Pro






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
AAIGBHAN_00005 3.A.1.1.30 74.4 3.2e-156 1 378 0.9692 0.8832 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily