Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2632
  Reference Plasmid   1111525849858814_bin.32__k141_126654
  Reference Plasmid Size   8797
  Reference Plasmid GC Content   0.71
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0049765 DIPMDIMP_00001 923 3 Skin 0.27 protein_coding synonymous_variant LOW 669A>G Ser223Ser
M0049766 DIPMDIMP_00001 1063 3 Skin 0.27 protein_coding missense_variant MODERATE 809T>A Phe270Tyr
M0049767 DIPMDIMP_00002 1304 4 Skin 0.36 protein_coding synonymous_variant LOW 711A>C Ala237Ala
M0049768 DIPMDIMP_00002 1442 4 Skin 0.36 protein_coding synonymous_variant LOW 573G>C Gly191Gly
M0049769 DIPMDIMP_00002 1712 5 Skin 0.45 protein_coding synonymous_variant LOW 303A>G Ala101Ala
M0049770 DIPMDIMP_00002 1745 3 Skin 0.27 protein_coding synonymous_variant LOW 270G>C Val90Val
M0049771 DIPMDIMP_00002 1868 3 Skin 0.27 protein_coding synonymous_variant LOW 147G>T Leu49Leu
M0049772 DIPMDIMP_00002 1892 3 Skin 0.27 protein_coding synonymous_variant LOW 123A>G Ala41Ala
M0049773 DIPMDIMP_00002 1997 5 Skin 0.45 protein_coding synonymous_variant LOW 18A>C Gly6Gly
M0049774 DIPMDIMP_00003 2026 3 Skin 0.27 protein_coding synonymous_variant LOW 1920G>A Glu640Glu
M0049775 DIPMDIMP_00003 2242 5 Skin 0.45 protein_coding synonymous_variant LOW 1704A>T Leu568Leu
M0049776 DIPMDIMP_00003 2467 4 Skin 0.36 protein_coding synonymous_variant LOW 1479G>C Gly493Gly
M0049777 DIPMDIMP_00003 2506 3 Skin 0.27 protein_coding synonymous_variant LOW 1440T>C Gly480Gly
M0049778 DIPMDIMP_00003 2725 3 Skin 0.27 protein_coding synonymous_variant LOW 1221C>T Pro407Pro
M0049779 DIPMDIMP_00003 2773 5 Skin 0.45 protein_coding synonymous_variant LOW 1173G>A Glu391Glu
M0049780 DIPMDIMP_00003 3055 3 Skin 0.27 protein_coding synonymous_variant LOW 891A>G Gly297Gly
M0049781 DIPMDIMP_00003 3085 4 Skin 0.36 protein_coding synonymous_variant LOW 861A>G Leu287Leu
M0049782 DIPMDIMP_00003 3088 4 Skin 0.36 protein_coding synonymous_variant LOW 858G>C Ala286Ala
M0049783 DIPMDIMP_00003 3231 6 Skin 0.55 protein_coding missense_variant MODERATE 715G>A Ala239Thr
M0049784 DIPMDIMP_00003 3238 6 Skin 0.55 protein_coding synonymous_variant LOW 708T>G Arg236Arg
M0049785 DIPMDIMP_00003 3289 4 Skin 0.36 protein_coding synonymous_variant LOW 657G>A Gln219Gln
M0049786 DIPMDIMP_00003 3322 4 Skin 0.36 protein_coding synonymous_variant LOW 624A>C Ala208Ala
M0049787 DIPMDIMP_00003 3415 3 Skin 0.27 protein_coding synonymous_variant LOW 531A>G Glu177Glu
M0049788 DIPMDIMP_00003 3456 4 Skin 0.36 protein_coding synonymous_variant LOW 490T>C Leu164Leu
M0049789 DIPMDIMP_00003 3544 4 Skin 0.36 protein_coding synonymous_variant LOW 402T>C Ala134Ala
M0049790 DIPMDIMP_00003 3585 5 Skin 0.45 protein_coding missense_variant MODERATE 361T>C Ser121Pro
M0049791 DIPMDIMP_00003 3723 3 Skin 0.27 protein_coding missense_variant MODERATE 223A>G Thr75Ala
M0049792 DIPMDIMP_00003 3758 5 Skin 0.45 protein_coding missense_variant MODERATE 188T>A Leu63Gln
M0049793 DIPMDIMP_00003 3787 5 Skin 0.45 protein_coding synonymous_variant LOW 159G>A Ala53Ala
M0049794 DIPMDIMP_00003 3844 3 Skin 0.27 protein_coding synonymous_variant LOW 102C>T Asp34Asp
M0049795 DIPMDIMP_00004 4136 4 Skin 0.36 protein_coding synonymous_variant LOW 447A>G Gly149Gly
M0049796 DIPMDIMP_00005 5137 4 Skin 0.36 protein_coding synonymous_variant LOW 381A>G Arg127Arg
M0049797 DIPMDIMP_00006 5421 3 Skin 0.27 protein_coding missense_variant MODERATE 28T>A Ser10Thr
M0049798 DIPMDIMP_00006 5592 5 Skin 0.45 protein_coding missense_variant MODERATE 199A>G Lys67Glu
M0049799 DIPMDIMP_00006 5903 5 Skin 0.45 protein_coding synonymous_variant LOW 510T>C Asp170Asp
M0049800 DIPMDIMP_00006 5969 3 Skin 0.27 protein_coding synonymous_variant LOW 576A>G Ala192Ala
M0049801 DIPMDIMP_00004 4403 3 Skin 0.27 protein_coding synonymous_variant LOW 180G>A Gly60Gly
M0049802 DIPMDIMP_00003 2092 4 Skin 0.36 protein_coding synonymous_variant LOW 1854C>T Ile618Ile
M0049803 DIPMDIMP_00003 3490 4 Skin 0.36 protein_coding synonymous_variant LOW 456T>C Ala152Ala
M0049804 DIPMDIMP_00003 3508 4 Skin 0.36 protein_coding synonymous_variant LOW 438A>C Ser146Ser
M0049805 DIPMDIMP_00006 5577 3 Skin 0.27 protein_coding missense_variant MODERATE 184A>G Thr62Ala
M0049806 DIPMDIMP_00006 5602 3 Skin 0.27 protein_coding missense_variant MODERATE 209A>G Asp70Gly
M0049807 DIPMDIMP_00003 3193 3 Skin 0.27 protein_coding synonymous_variant LOW 753G>A Arg251Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term