Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2634
  Reference Plasmid   1111525849858814_bin.32__k141_197686
  Reference Plasmid Size   28849
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0050038 MJPIJJHC_00012 6127 4 Skin 0.14 protein_coding synonymous_variant LOW 15C>T Asn5Asn
M0050039 MJPIJJHC_00012 6148 4 Skin 0.14 protein_coding synonymous_variant LOW 36T>C Val12Val
M0050040 MJPIJJHC_00012 6154 3 Skin 0.11 protein_coding synonymous_variant LOW 42C>T His14His
M0050041 MJPIJJHC_00012 6169 3 Skin 0.11 protein_coding synonymous_variant LOW 57G>C Leu19Leu
M0050042 MJPIJJHC_00012 6277 3 Skin 0.11 protein_coding synonymous_variant LOW 165G>C Leu55Leu
M0050043 MJPIJJHC_00012 6298 3 Skin 0.11 protein_coding synonymous_variant LOW 186A>G Glu62Glu
M0050044 MJPIJJHC_00012 6307 3 Skin 0.11 protein_coding synonymous_variant LOW 195G>C Gly65Gly
M0050045 MJPIJJHC_00012 6310 3 Skin 0.11 protein_coding synonymous_variant LOW 198C>G Thr66Thr
M0050046 MJPIJJHC_00012 6364 3 Skin 0.11 protein_coding synonymous_variant LOW 252G>A Glu84Glu
M0050047 MJPIJJHC_00012 6471 4 Skin 0.14 protein_coding missense_variant MODERATE 359G>A Arg120Lys
M0050048 MJPIJJHC_00012 6475 4 Skin 0.14 protein_coding synonymous_variant LOW 363C>G Pro121Pro
M0050049 MJPIJJHC_00012 6514 3 Skin 0.11 protein_coding synonymous_variant LOW 402G>A Glu134Glu
M0050050 MJPIJJHC_00012 6773 7 Skin 0.25 protein_coding synonymous_variant LOW 661T>C Leu221Leu
M0050051 MJPIJJHC_00012 6883 8 Skin 0.29 protein_coding synonymous_variant LOW 771G>C Ala257Ala
M0050052 MJPIJJHC_00012 6907 4 Skin 0.14 protein_coding synonymous_variant LOW 795G>C Pro265Pro
M0050053 MJPIJJHC_00012 6937 3 Skin 0.11 protein_coding synonymous_variant LOW 825G>A Val275Val
M0050054 MJPIJJHC_00012 6964 5 Skin 0.18 protein_coding synonymous_variant LOW 852T>C Thr284Thr
M0050055 MJPIJJHC_00012 6997 7 Skin 0.25 protein_coding synonymous_variant LOW 885T>C Asp295Asp
M0050056 MJPIJJHC_00012 7078 6 Skin 0.21 protein_coding synonymous_variant LOW 966T>C Arg322Arg
M0050057 MJPIJJHC_00012 7270 6 Skin 0.21 protein_coding synonymous_variant LOW 1158G>C Pro386Pro
M0050058 MJPIJJHC_00012 7291 3 Skin 0.11 protein_coding synonymous_variant LOW 1179C>T Asp393Asp
M0050059 MJPIJJHC_00012 7295 3 Skin 0.11 protein_coding missense_variant MODERATE 1183G>A Gly395Ser
M0050060 MJPIJJHC_00012 7321 6 Skin 0.21 protein_coding synonymous_variant LOW 1209A>G Glu403Glu
M0050061 MJPIJJHC_00012 7417 6 Skin 0.21 protein_coding synonymous_variant LOW 1305A>G Gly435Gly
M0050062 MJPIJJHC_00012 7582 5 Skin 0.18 protein_coding synonymous_variant LOW 1470C>T Ile490Ile
M0050063 MJPIJJHC_00007 7957 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4596C>A None
M0050064 MJPIJJHC_00007 7958 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4597T>C None
M0050065 MJPIJJHC_00007 7986 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4625C>G None
M0050066 MJPIJJHC_00007 7988 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4627C>G None
M0050067 MJPIJJHC_00007 7999 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4638G>C None
M0050068 MJPIJJHC_00007 8025 7 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4664T>C None
M0050069 MJPIJJHC_00007 8034 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4673A>G None
M0050070 MJPIJJHC_00013 8079 6 Skin 0.21 protein_coding initiator_codon_variant LOW 1A>T Met1?
M0050071 MJPIJJHC_00013 8154 5 Skin 0.18 protein_coding missense_variant MODERATE 76T>C Cys26Arg
M0050072 MJPIJJHC_00013 8293 8 Skin 0.29 protein_coding missense_variant MODERATE 215G>A Gly72Glu
M0050073 MJPIJJHC_00013 8294 8 Skin 0.29 protein_coding synonymous_variant LOW 216A>G Gly72Gly
M0050074 MJPIJJHC_00013 8306 6 Skin 0.21 protein_coding synonymous_variant LOW 228A>G Ala76Ala
M0050075 MJPIJJHC_00013 8309 8 Skin 0.29 protein_coding synonymous_variant LOW 231C>G Leu77Leu
M0050076 MJPIJJHC_00013 8312 8 Skin 0.29 protein_coding synonymous_variant LOW 234T>C Val78Val
M0050077 MJPIJJHC_00013 8379 6 Skin 0.21 protein_coding synonymous_variant LOW 301C>T Leu101Leu
M0050078 MJPIJJHC_00013 8477 7 Skin 0.25 protein_coding synonymous_variant LOW 399C>T Pro133Pro
M0050079 MJPIJJHC_00013 8478 7 Skin 0.25 protein_coding synonymous_variant LOW 400C>T Leu134Leu
M0050080 MJPIJJHC_00013 8532 8 Skin 0.29 protein_coding missense_variant MODERATE 454G>A Val152Ile
M0050081 MJPIJJHC_00013 8543 7 Skin 0.25 protein_coding synonymous_variant LOW 465A>G Ala155Ala
M0050082 MJPIJJHC_00013 8681 5 Skin 0.18 protein_coding missense_variant MODERATE 603A>C Lys201Asn
M0050083 MJPIJJHC_00013 8686 3 Skin 0.11 protein_coding missense_variant MODERATE 608C>A Thr203Asn
M0050084 MJPIJJHC_00013 8718 5 Skin 0.18 protein_coding missense_variant MODERATE 640C>G Gln214Glu
M0050085 MJPIJJHC_00009 8773 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4076C>G None
M0050086 MJPIJJHC_00014 9183 3 Skin 0.11 protein_coding synonymous_variant LOW 483C>G Gly161Gly
M0050087 MJPIJJHC_00014 9189 3 Skin 0.11 protein_coding synonymous_variant LOW 477G>A Glu159Glu
M0050088 MJPIJJHC_00014 9192 3 Skin 0.11 protein_coding missense_variant MODERATE 474G>C Glu158Asp
M0050089 MJPIJJHC_00014 9261 4 Skin 0.14 protein_coding synonymous_variant LOW 405G>T Pro135Pro
M0050090 MJPIJJHC_00014 9547 6 Skin 0.21 protein_coding missense_variant MODERATE 119A>T Gln40Leu
M0050091 MJPIJJHC_00016 11066 3 Skin 0.11 protein_coding synonymous_variant LOW 543G>A Gly181Gly
M0050092 MJPIJJHC_00016 11264 4 Skin 0.14 protein_coding synonymous_variant LOW 345T>C Ser115Ser
M0050093 MJPIJJHC_00018 12280 3 Skin 0.11 protein_coding synonymous_variant LOW 711C>T Thr237Thr
M0050094 MJPIJJHC_00019 13823 3 Skin 0.11 protein_coding missense_variant MODERATE 904A>G Thr302Ala
M0050095 MJPIJJHC_00019 13947 3 Skin 0.11 protein_coding synonymous_variant LOW 780T>C Ser260Ser
M0050096 MJPIJJHC_00019 14064 4 Skin 0.14 protein_coding synonymous_variant LOW 663T>G Ala221Ala
M0050097 MJPIJJHC_00019 14066 4 Skin 0.14 protein_coding missense_variant MODERATE 661G>C Ala221Pro
M0050098 MJPIJJHC_00019 14190 3 Skin 0.11 protein_coding synonymous_variant LOW 537G>T Val179Val
M0050099 MJPIJJHC_00019 14232 3 Skin 0.11 protein_coding synonymous_variant LOW 495C>G Pro165Pro
M0050100 MJPIJJHC_00019 14325 3 Skin 0.11 protein_coding synonymous_variant LOW 402G>C Ala134Ala
M0050101 MJPIJJHC_00019 14337 3 Skin 0.11 protein_coding synonymous_variant LOW 390T>C Ala130Ala
M0050102 MJPIJJHC_00019 14554 4 Skin 0.14 protein_coding missense_variant MODERATE 173T>C Val58Ala
M0050103 MJPIJJHC_00019 14558 4 Skin 0.14 protein_coding synonymous_variant LOW 169T>C Leu57Leu
M0050104 MJPIJJHC_00019 14568 4 Skin 0.14 protein_coding synonymous_variant LOW 159C>G Val53Val
M0050105 MJPIJJHC_00015 14754 5 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4758G>T None
M0050106 MJPIJJHC_00020 14931 4 Skin 0.14 protein_coding synonymous_variant LOW 6T>C Thr2Thr
M0050107 MJPIJJHC_00020 15030 3 Skin 0.11 protein_coding synonymous_variant LOW 105T>C Ala35Ala
M0050108 MJPIJJHC_00020 15066 5 Skin 0.18 protein_coding synonymous_variant LOW 141A>G Arg47Arg
M0050109 MJPIJJHC_00020 15165 5 Skin 0.18 protein_coding synonymous_variant LOW 240G>C Gly80Gly
M0050110 MJPIJJHC_00016 15604 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3996T>G None
M0050111 MJPIJJHC_00016 15623 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4015C>G None
M0050112 MJPIJJHC_00021 15852 3 Skin 0.11 protein_coding synonymous_variant LOW 222A>G Leu74Leu
M0050113 MJPIJJHC_00021 15973 4 Skin 0.14 protein_coding missense_variant MODERATE 343G>C Ala115Pro
M0050114 MJPIJJHC_00021 15996 4 Skin 0.14 protein_coding synonymous_variant LOW 366T>C Ile122Ile
M0050115 MJPIJJHC_00021 16434 4 Skin 0.14 protein_coding synonymous_variant LOW 804G>C Ala268Ala
M0050116 MJPIJJHC_00022 17058 3 Skin 0.11 protein_coding synonymous_variant LOW 249T>C Tyr83Tyr
M0050117 MJPIJJHC_00022 17064 3 Skin 0.11 protein_coding synonymous_variant LOW 255T>C Leu85Leu
M0050118 MJPIJJHC_00022 17128 3 Skin 0.11 protein_coding missense_variant MODERATE 319A>C Met107Leu
M0050119 MJPIJJHC_00022 17271 4 Skin 0.14 protein_coding synonymous_variant LOW 462G>C Pro154Pro
M0050120 MJPIJJHC_00022 17316 5 Skin 0.18 protein_coding synonymous_variant LOW 507T>C Tyr169Tyr
M0050121 MJPIJJHC_00023 18517 3 Skin 0.11 protein_coding missense_variant MODERATE 641T>C Ile214Thr
M0050122 MJPIJJHC_00023 19286 3 Skin 0.11 protein_coding synonymous_variant LOW 1410T>C Arg470Arg
M0050123 MJPIJJHC_00019 19322 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4596G>A None
M0050124 MJPIJJHC_00024 19396 3 Skin 0.11 protein_coding synonymous_variant LOW 54T>G Ala18Ala
M0050125 MJPIJJHC_00016 11564 4 Skin 0.14 protein_coding synonymous_variant LOW 45C>A Ala15Ala
M0050126 MJPIJJHC_00007 2855 3 Skin 0.11 protein_coding missense_variant MODERATE 507G>C Glu169Asp
M0050127 MJPIJJHC_00007 3095 4 Skin 0.14 protein_coding missense_variant MODERATE 267T>G Phe89Leu
M0050128 MJPIJJHC_00007 3116 5 Skin 0.18 protein_coding synonymous_variant LOW 246T>C Phe82Phe
M0050129 MJPIJJHC_00007 3128 4 Skin 0.14 protein_coding synonymous_variant LOW 234C>T Ala78Ala
M0050130 MJPIJJHC_00007 3290 6 Skin 0.21 protein_coding synonymous_variant LOW 72C>G Gly24Gly
M0050131 MJPIJJHC_00007 3291 6 Skin 0.21 protein_coding missense_variant MODERATE 71G>C Gly24Ala
M0050132 MJPIJJHC_00007 3334 6 Skin 0.21 protein_coding missense_variant MODERATE 28G>A Val10Ile
M0050133 MJPIJJHC_00008 3395 3 Skin 0.11 protein_coding missense_variant MODERATE 311G>T Gly104Val
M0050134 MJPIJJHC_00008 3458 3 Skin 0.11 protein_coding missense_variant MODERATE 248C>G Pro83Arg
M0050135 MJPIJJHC_00008 3533 3 Skin 0.11 protein_coding missense_variant MODERATE 173T>C Val58Ala
M0050136 MJPIJJHC_00008 3655 5 Skin 0.18 protein_coding synonymous_variant LOW 51A>C Ala17Ala
M0050137 MJPIJJHC_00008 3689 3 Skin 0.11 protein_coding missense_variant MODERATE 17G>A Gly6Asp
M0050138 MJPIJJHC_00002 3712 4 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -2889T>C None
M0050139 MJPIJJHC_00009 3937 3 Skin 0.11 protein_coding missense_variant MODERATE 761T>G Val254Gly
M0050140 MJPIJJHC_00009 4053 3 Skin 0.11 protein_coding missense_variant MODERATE 645G>C Met215Ile
M0050141 MJPIJJHC_00009 4115 3 Skin 0.11 protein_coding missense_variant MODERATE 583G>A Val195Ile
M0050142 MJPIJJHC_00009 4214 3 Skin 0.11 protein_coding missense_variant MODERATE 484G>C Gly162Arg
M0050143 MJPIJJHC_00009 4215 4 Skin 0.14 protein_coding synonymous_variant LOW 483A>G Ser161Ser
M0050144 MJPIJJHC_00009 4525 5 Skin 0.18 protein_coding missense_variant MODERATE 173A>G Glu58Gly
M0050145 MJPIJJHC_00009 4592 3 Skin 0.11 protein_coding missense_variant MODERATE 106G>T Gly36Cys
M0050146 MJPIJJHC_00009 4682 8 Skin 0.29 protein_coding missense_variant MODERATE 16G>A Val6Ile
M0050147 MJPIJJHC_00009 4685 4 Skin 0.14 protein_coding missense_variant MODERATE 13T>A Trp5Arg
M0050148 MJPIJJHC_00002 4701 8 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3878T>C None
M0050149 MJPIJJHC_00002 4706 7 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -3883A>G None
M0050150 MJPIJJHC_00002 4709 5 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -3886C>T None
M0050151 MJPIJJHC_00002 4737 8 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3914T>C None
M0050152 MJPIJJHC_00002 4771 8 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3948G>A None
M0050153 MJPIJJHC_00002 4821 8 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3998T>C None
M0050154 MJPIJJHC_00002 4886 5 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4063G>C None
M0050155 MJPIJJHC_00002 4899 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4076G>T None
M0050156 MJPIJJHC_00002 4910 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4087C>T None
M0050157 MJPIJJHC_00002 4942 7 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4119C>A None
M0050158 MJPIJJHC_00002 4958 7 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4135T>G None
M0050159 MJPIJJHC_00010 5211 6 Skin 0.21 protein_coding missense_variant MODERATE 251A>G Asp84Gly
M0050160 MJPIJJHC_00010 5308 7 Skin 0.25 protein_coding synonymous_variant LOW 154T>C Leu52Leu
M0050161 MJPIJJHC_00002 5498 6 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -4675T>A None
M0050162 MJPIJJHC_00002 5519 7 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4696A>C None
M0050163 MJPIJJHC_00011 5655 5 Skin 0.18 protein_coding missense_variant MODERATE 116T>C Leu39Pro
M0050164 MJPIJJHC_00012 7108 5 Skin 0.18 protein_coding synonymous_variant LOW 996A>C Ile332Ile
M0050165 MJPIJJHC_00013 8337 3 Skin 0.11 protein_coding missense_variant MODERATE 259G>A Ala87Thr
M0050166 MJPIJJHC_00001 99 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -97T>C None
M0050167 MJPIJJHC_00002 772 3 Skin 0.11 protein_coding missense_variant MODERATE 52G>A Ala18Thr
M0050168 MJPIJJHC_00002 815 3 Skin 0.11 protein_coding synonymous_variant LOW 9A>C Ala3Ala
M0050169 MJPIJJHC_00003 844 3 Skin 0.11 protein_coding stop_lost&splice_region_variant HIGH 190T>C Ter64Glnext*?
M0050170 MJPIJJHC_00003 848 3 Skin 0.11 protein_coding synonymous_variant LOW 186T>C Asp62Asp
M0050171 MJPIJJHC_00002 1390 4 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -567T>C None
M0050172 MJPIJJHC_00005 1398 4 Skin 0.14 protein_coding missense_variant MODERATE 7C>T Leu3Phe
M0050173 MJPIJJHC_00005 1611 6 Skin 0.21 protein_coding missense_variant MODERATE 220C>G Gln74Glu
M0050174 MJPIJJHC_00005 1631 4 Skin 0.14 protein_coding synonymous_variant LOW 240T>C Asn80Asn
M0050175 MJPIJJHC_00005 1727 5 Skin 0.18 protein_coding synonymous_variant LOW 336A>G Pro112Pro
M0050176 MJPIJJHC_00005 1792 5 Skin 0.18 protein_coding missense_variant MODERATE 401C>T Thr134Met
M0050177 MJPIJJHC_00005 1994 6 Skin 0.21 protein_coding synonymous_variant LOW 603T>C Val201Val
M0050178 MJPIJJHC_00006 2131 5 Skin 0.18 protein_coding missense_variant MODERATE 395C>A Ser132Tyr
M0050179 MJPIJJHC_00006 2136 5 Skin 0.18 protein_coding synonymous_variant LOW 390C>G Gly130Gly
M0050180 MJPIJJHC_00006 2271 4 Skin 0.14 protein_coding synonymous_variant LOW 255G>A Glu85Glu
M0050181 MJPIJJHC_00006 2433 3 Skin 0.11 protein_coding missense_variant MODERATE 93A>C Gln31His
M0050182 MJPIJJHC_00009 4547 3 Skin 0.11 protein_coding missense_variant MODERATE 151C>G Pro51Ala
M0050183 MJPIJJHC_00012 6757 4 Skin 0.14 protein_coding synonymous_variant LOW 645C>T Asp215Asp
M0050184 MJPIJJHC_00012 6760 4 Skin 0.14 protein_coding synonymous_variant LOW 648C>G Pro216Pro
M0050185 MJPIJJHC_00012 6853 3 Skin 0.11 protein_coding synonymous_variant LOW 741G>C Val247Val
M0050186 MJPIJJHC_00014 8916 4 Skin 0.14 protein_coding synonymous_variant LOW 750C>T Leu250Leu
M0050187 MJPIJJHC_00015 9763 5 Skin 0.18 protein_coding synonymous_variant LOW 234C>G Pro78Pro
M0050188 MJPIJJHC_00017 11757 3 Skin 0.11 protein_coding synonymous_variant LOW 121T>C Leu41Leu
M0050189 MJPIJJHC_00019 13638 3 Skin 0.11 protein_coding synonymous_variant LOW 1089G>A Glu363Glu
M0050190 MJPIJJHC_00019 14707 3 Skin 0.11 protein_coding missense_variant MODERATE 20T>G Ile7Ser
M0050191 MJPIJJHC_00015 14790 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4794T>C None
M0050192 MJPIJJHC_00005 1729 3 Skin 0.11 protein_coding missense_variant MODERATE 338C>T Pro113Leu
M0050193 MJPIJJHC_00005 1755 3 Skin 0.11 protein_coding missense_variant MODERATE 364G>C Asp122His
M0050194 MJPIJJHC_00005 1967 3 Skin 0.11 protein_coding synonymous_variant LOW 576C>T Ile192Ile
M0050195 MJPIJJHC_00006 2381 3 Skin 0.11 protein_coding missense_variant MODERATE 145G>C Val49Leu
M0050196 MJPIJJHC_00010 5084 4 Skin 0.14 protein_coding synonymous_variant LOW 378G>A Ala126Ala
M0050197 MJPIJJHC_00010 5096 4 Skin 0.14 protein_coding synonymous_variant LOW 366C>T Pro122Pro
M0050198 MJPIJJHC_00010 5123 4 Skin 0.14 protein_coding synonymous_variant LOW 339G>A Ala113Ala
M0050199 MJPIJJHC_00010 5135 3 Skin 0.11 protein_coding synonymous_variant LOW 327G>A Val109Val
M0050200 MJPIJJHC_00010 5165 3 Skin 0.11 protein_coding synonymous_variant LOW 297G>A Glu99Glu
M0050201 MJPIJJHC_00024 20134 3 Skin 0.11 protein_coding synonymous_variant LOW 792C>G Leu264Leu
M0050202 MJPIJJHC_00024 20170 3 Skin 0.11 protein_coding synonymous_variant LOW 828T>C Ala276Ala
M0050203 MJPIJJHC_00024 20239 3 Skin 0.11 protein_coding missense_variant MODERATE 897C>A Asp299Glu
M0050204 MJPIJJHC_00024 20242 3 Skin 0.11 protein_coding synonymous_variant LOW 900C>G Thr300Thr
M0050205 MJPIJJHC_00025 21238 3 Skin 0.11 protein_coding missense_variant MODERATE 923G>C Gly308Ala
M0050206 MJPIJJHC_00002 1134 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -311A>G None
M0050207 MJPIJJHC_00005 1632 3 Skin 0.11 protein_coding missense_variant MODERATE 241G>T Gly81Cys
M0050208 MJPIJJHC_00014 8849 3 Skin 0.11 protein_coding synonymous_variant LOW 817T>C Leu273Leu
M0050209 MJPIJJHC_00014 8922 3 Skin 0.11 protein_coding synonymous_variant LOW 744G>A Val248Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
MJPIJJHC_00026 2.A.56.1.1 78.3 3.4e-143 4 330 0.9909 0.9970 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.56 The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family
MJPIJJHC_00028 2.A.56.1.1 72 1.9e-173 1 440 1.0000 1.3213 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.56 The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family