Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2643
  Reference Plasmid   1111525849858868_bin.26__k141_223916
  Reference Plasmid Size   23930
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0050350 NBJALLGD_00035 20273 5 Skin 0.23 protein_coding synonymous_variant LOW 504G>C Arg168Arg
M0050351 NBJALLGD_00035 20279 5 Skin 0.23 protein_coding synonymous_variant LOW 510C>T Asp170Asp
M0050352 NBJALLGD_00035 20321 5 Skin 0.23 protein_coding synonymous_variant LOW 552T>C Gly184Gly
M0050353 NBJALLGD_00035 20342 5 Skin 0.23 protein_coding synonymous_variant LOW 573T>C Phe191Phe
M0050354 NBJALLGD_00035 20384 5 Skin 0.23 protein_coding synonymous_variant LOW 615C>G Ala205Ala
M0050355 NBJALLGD_00035 20389 5 Skin 0.23 protein_coding missense_variant MODERATE 620T>C Leu207Pro
M0050356 NBJALLGD_00035 20420 5 Skin 0.23 protein_coding synonymous_variant LOW 651A>C Arg217Arg
M0050357 NBJALLGD_00035 20588 4 Skin 0.18 protein_coding synonymous_variant LOW 819C>T Asp273Asp
M0050358 NBJALLGD_00035 20603 4 Skin 0.18 protein_coding synonymous_variant LOW 834T>C Asp278Asp
M0050359 NBJALLGD_00035 20606 4 Skin 0.18 protein_coding synonymous_variant LOW 837G>C Ala279Ala
M0050360 NBJALLGD_00035 21255 4 Skin 0.18 protein_coding missense_variant MODERATE 1486T>G Leu496Val
M0050361 NBJALLGD_00036 21681 5 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -5T>C None
M0050362 NBJALLGD_00036 22094 6 Skin 0.27 protein_coding synonymous_variant LOW 409C>T Leu137Leu
M0050363 NBJALLGD_00016 5483 3 Skin 0.14 protein_coding missense_variant MODERATE 304T>C Trp102Arg
M0050364 NBJALLGD_00016 5579 3 Skin 0.14 protein_coding missense_variant MODERATE 208C>T Pro70Ser
M0050365 NBJALLGD_00016 5591 3 Skin 0.14 protein_coding missense_variant MODERATE 196T>C Trp66Arg
M0050366 NBJALLGD_00016 5751 3 Skin 0.14 protein_coding synonymous_variant LOW 36T>A Ala12Ala
M0050367 NBJALLGD_00010 5968 5 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -2759G>T None
M0050368 NBJALLGD_00010 5971 5 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -2762A>T None
M0050369 NBJALLGD_00010 5980 5 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -2771A>G None
M0050370 NBJALLGD_00010 6284 6 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -3075T>C None
M0050371 NBJALLGD_00010 6301 5 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -3092A>G None
M0050372 NBJALLGD_00010 6317 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -3108G>T None
M0050373 NBJALLGD_00010 6360 6 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -3151G>C None
M0050374 NBJALLGD_00017 6433 6 Skin 0.27 protein_coding missense_variant MODERATE 919G>A Glu307Lys
M0050375 NBJALLGD_00017 6572 7 Skin 0.32 protein_coding synonymous_variant LOW 780A>G Val260Val
M0050376 NBJALLGD_00017 6586 7 Skin 0.32 protein_coding missense_variant MODERATE 766T>G Ser256Ala
M0050377 NBJALLGD_00017 6596 6 Skin 0.27 protein_coding synonymous_variant LOW 756C>G Arg252Arg
M0050378 NBJALLGD_00017 6637 5 Skin 0.23 protein_coding missense_variant MODERATE 715G>T Val239Leu
M0050379 NBJALLGD_00017 6664 6 Skin 0.27 protein_coding synonymous_variant LOW 688T>C Leu230Leu
M0050380 NBJALLGD_00017 7076 3 Skin 0.14 protein_coding synonymous_variant LOW 276G>A Val92Val
M0050381 NBJALLGD_00017 7079 6 Skin 0.27 protein_coding synonymous_variant LOW 273G>C Gly91Gly
M0050382 NBJALLGD_00017 7082 3 Skin 0.14 protein_coding synonymous_variant LOW 270G>T Arg90Arg
M0050383 NBJALLGD_00017 7151 7 Skin 0.32 protein_coding synonymous_variant LOW 201T>G Pro67Pro
M0050384 NBJALLGD_00017 7196 6 Skin 0.27 protein_coding synonymous_variant LOW 156T>C Tyr52Tyr
M0050385 NBJALLGD_00017 7224 7 Skin 0.32 protein_coding missense_variant MODERATE 128C>A Ala43Asp
M0050386 NBJALLGD_00017 7241 7 Skin 0.32 protein_coding synonymous_variant LOW 111T>C Ala37Ala
M0050387 NBJALLGD_00017 7307 4 Skin 0.18 protein_coding synonymous_variant LOW 45A>G Glu15Glu
M0050388 NBJALLGD_00010 7534 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4325G>T None
M0050389 NBJALLGD_00010 7573 6 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4364A>G None
M0050390 NBJALLGD_00018 7605 4 Skin 0.18 protein_coding missense_variant MODERATE 10G>C Glu4Gln
M0050391 NBJALLGD_00018 7607 5 Skin 0.23 protein_coding synonymous_variant LOW 12A>G Glu4Glu
M0050392 NBJALLGD_00018 7736 7 Skin 0.32 protein_coding synonymous_variant LOW 141G>C Val47Val
M0050393 NBJALLGD_00018 7816 5 Skin 0.23 protein_coding missense_variant MODERATE 221C>T Ala74Val
M0050394 NBJALLGD_00018 7817 6 Skin 0.27 protein_coding synonymous_variant LOW 222C>G Ala74Ala
M0050395 NBJALLGD_00018 8018 7 Skin 0.32 protein_coding synonymous_variant LOW 423T>C Ala141Ala
M0050396 NBJALLGD_00018 8024 4 Skin 0.18 protein_coding synonymous_variant LOW 429G>C Ala143Ala
M0050397 NBJALLGD_00018 8038 7 Skin 0.32 protein_coding missense_variant MODERATE 443G>C Gly148Ala
M0050398 NBJALLGD_00018 8250 6 Skin 0.27 protein_coding missense_variant MODERATE 655C>G Gln219Glu
M0050399 NBJALLGD_00018 8310 4 Skin 0.18 protein_coding missense_variant MODERATE 715G>A Val239Ile
M0050400 NBJALLGD_00018 8327 8 Skin 0.36 protein_coding synonymous_variant LOW 732A>C Gly244Gly
M0050401 NBJALLGD_00018 8383 3 Skin 0.14 protein_coding missense_variant MODERATE 788C>T Ala263Val
M0050402 NBJALLGD_00018 8397 6 Skin 0.27 protein_coding missense_variant MODERATE 802G>A Gly268Arg
M0050403 NBJALLGD_00018 8398 6 Skin 0.27 protein_coding missense_variant MODERATE 803G>T Gly268Val
M0050404 NBJALLGD_00018 8408 4 Skin 0.18 protein_coding synonymous_variant LOW 813C>A Ala271Ala
M0050405 NBJALLGD_00018 8438 6 Skin 0.27 protein_coding synonymous_variant LOW 843C>G Ala281Ala
M0050406 NBJALLGD_00018 8441 6 Skin 0.27 protein_coding synonymous_variant LOW 846C>G Leu282Leu
M0050407 NBJALLGD_00018 8467 4 Skin 0.18 protein_coding missense_variant MODERATE 872T>C Met291Thr
M0050408 NBJALLGD_00019 8780 3 Skin 0.14 protein_coding missense_variant MODERATE 298C>T His100Tyr
M0050409 NBJALLGD_00020 8874 4 Skin 0.18 protein_coding synonymous_variant LOW 28C>A Arg10Arg
M0050410 NBJALLGD_00020 8957 7 Skin 0.32 protein_coding synonymous_variant LOW 111A>C Ile37Ile
M0050411 NBJALLGD_00020 9137 4 Skin 0.18 protein_coding synonymous_variant LOW 291C>A Arg97Arg
M0050412 NBJALLGD_00020 9197 4 Skin 0.18 protein_coding synonymous_variant LOW 351C>G Pro117Pro
M0050413 NBJALLGD_00020 9255 3 Skin 0.14 protein_coding missense_variant MODERATE 409G>A Gly137Ser
M0050414 NBJALLGD_00020 9266 3 Skin 0.14 protein_coding synonymous_variant LOW 420C>A Ile140Ile
M0050415 NBJALLGD_00020 9275 3 Skin 0.14 protein_coding synonymous_variant LOW 429T>C Val143Val
M0050416 NBJALLGD_00020 9393 4 Skin 0.18 protein_coding missense_variant MODERATE 547G>A Val183Ile
M0050417 NBJALLGD_00020 9644 4 Skin 0.18 protein_coding synonymous_variant LOW 798T>C Val266Val
M0050418 NBJALLGD_00020 9851 4 Skin 0.18 protein_coding synonymous_variant LOW 1005A>G Arg335Arg
M0050419 NBJALLGD_00009 2619 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -129T>C None
M0050420 NBJALLGD_00010 3127 3 Skin 0.14 protein_coding missense_variant MODERATE 83G>A Arg28Gln
M0050421 NBJALLGD_00010 3145 3 Skin 0.14 protein_coding missense_variant MODERATE 65C>T Pro22Leu
M0050422 NBJALLGD_00010 3309 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -100A>G None
M0050423 NBJALLGD_00010 3410 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -201T>C None
M0050424 NBJALLGD_00010 3411 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -202T>C None
M0050425 NBJALLGD_00011 3651 3 Skin 0.14 protein_coding synonymous_variant LOW 21T>C Val7Val
M0050426 NBJALLGD_00010 3682 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -473A>C None
M0050427 NBJALLGD_00012 3743 3 Skin 0.14 protein_coding missense_variant MODERATE 55A>G Asn19Asp
M0050428 NBJALLGD_00012 3751 3 Skin 0.14 protein_coding synonymous_variant LOW 63G>C Arg21Arg
M0050429 NBJALLGD_00012 3763 3 Skin 0.14 protein_coding synonymous_variant LOW 75C>A Gly25Gly
M0050430 NBJALLGD_00012 3778 3 Skin 0.14 protein_coding synonymous_variant LOW 90C>G Thr30Thr
M0050431 NBJALLGD_00013 4045 3 Skin 0.14 protein_coding missense_variant MODERATE 129A>C Lys43Asn
M0050432 NBJALLGD_00013 4100 3 Skin 0.14 protein_coding missense_variant MODERATE 184G>A Val62Ile
M0050433 NBJALLGD_00010 5833 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -2624A>T None
M0050434 NBJALLGD_00010 5844 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -2635C>A None
M0050435 NBJALLGD_00010 5998 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -2789G>A None
M0050436 NBJALLGD_00010 7431 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4222T>G None
M0050437 NBJALLGD_00010 7489 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4280C>T None
M0050438 NBJALLGD_00010 7501 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4292G>T None
M0050439 NBJALLGD_00010 7503 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4294C>G None
M0050440 NBJALLGD_00021 9972 4 Skin 0.18 protein_coding missense_variant MODERATE 886G>T Asp296Tyr
M0050441 NBJALLGD_00021 9998 4 Skin 0.18 protein_coding missense_variant MODERATE 860T>C Val287Ala
M0050442 NBJALLGD_00021 10018 4 Skin 0.18 protein_coding synonymous_variant LOW 840T>C Val280Val
M0050443 NBJALLGD_00021 10039 4 Skin 0.18 protein_coding synonymous_variant LOW 819T>G Gly273Gly
M0050444 NBJALLGD_00021 10043 4 Skin 0.18 protein_coding missense_variant MODERATE 815C>A Ala272Glu
M0050445 NBJALLGD_00021 10101 4 Skin 0.18 protein_coding missense_variant MODERATE 757T>A Leu253Met
M0050446 NBJALLGD_00021 10164 4 Skin 0.18 protein_coding missense_variant MODERATE 694C>T Leu232Phe
M0050447 NBJALLGD_00023 11419 4 Skin 0.18 protein_coding missense_variant MODERATE 254C>T Thr85Ile
M0050448 NBJALLGD_00023 11422 4 Skin 0.18 protein_coding missense_variant MODERATE 257T>G Leu86Arg
M0050449 NBJALLGD_00024 11651 4 Skin 0.18 protein_coding synonymous_variant LOW 147T>C Ile49Ile
M0050450 NBJALLGD_00024 11699 3 Skin 0.14 protein_coding synonymous_variant LOW 195C>T Ser65Ser
M0050451 NBJALLGD_00024 11720 3 Skin 0.14 protein_coding synonymous_variant LOW 216G>C Pro72Pro
M0050452 NBJALLGD_00024 11750 3 Skin 0.14 protein_coding synonymous_variant LOW 246C>T Asp82Asp
M0050453 NBJALLGD_00024 11756 3 Skin 0.14 protein_coding synonymous_variant LOW 252A>G Gly84Gly
M0050454 NBJALLGD_00017 11817 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4466A>G None
M0050455 NBJALLGD_00017 11876 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4525T>G None
M0050456 NBJALLGD_00017 11960 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4609G>C None
M0050457 NBJALLGD_00017 11969 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4618G>C None
M0050458 NBJALLGD_00017 11975 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4624C>T None
M0050459 NBJALLGD_00017 12002 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4651G>A None
M0050460 NBJALLGD_00017 12023 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4672C>T None
M0050461 NBJALLGD_00017 12044 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4693C>T None
M0050462 NBJALLGD_00017 12048 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4697G>A None
M0050463 NBJALLGD_00017 12077 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4726C>G None
M0050464 NBJALLGD_00017 12083 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4732T>C None
M0050465 NBJALLGD_00017 12096 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4745G>C None
M0050466 NBJALLGD_00017 12101 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4750C>G None
M0050467 NBJALLGD_00017 12133 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4782A>C None
M0050468 NBJALLGD_00017 12164 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4813T>C None
M0050469 NBJALLGD_00017 12188 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4837T>C None
M0050470 NBJALLGD_00017 12200 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4849C>A None
M0050471 NBJALLGD_00025 12216 4 Skin 0.18 protein_coding synonymous_variant LOW 256C>A Arg86Arg
M0050472 NBJALLGD_00025 12222 4 Skin 0.18 protein_coding missense_variant MODERATE 250G>C Ala84Pro
M0050473 NBJALLGD_00025 12232 4 Skin 0.18 protein_coding synonymous_variant LOW 240A>C Arg80Arg
M0050474 NBJALLGD_00025 12235 4 Skin 0.18 protein_coding synonymous_variant LOW 237G>C Pro79Pro
M0050475 NBJALLGD_00025 12249 4 Skin 0.18 protein_coding missense_variant MODERATE 223C>A Leu75Met
M0050476 NBJALLGD_00025 12328 4 Skin 0.18 protein_coding synonymous_variant LOW 144G>C Thr48Thr
M0050477 NBJALLGD_00025 12343 4 Skin 0.18 protein_coding synonymous_variant LOW 129T>C Asp43Asp
M0050478 NBJALLGD_00018 8043 3 Skin 0.14 protein_coding synonymous_variant LOW 448C>T Leu150Leu
M0050479 NBJALLGD_00019 8593 3 Skin 0.14 protein_coding synonymous_variant LOW 111C>G Arg37Arg
M0050480 NBJALLGD_00019 8595 3 Skin 0.14 protein_coding missense_variant MODERATE 113A>G Gln38Arg
M0050481 NBJALLGD_00019 8625 3 Skin 0.14 protein_coding missense_variant MODERATE 143A>G Glu48Gly
M0050482 NBJALLGD_00021 10518 3 Skin 0.14 protein_coding missense_variant MODERATE 340G>A Ala114Thr
M0050483 NBJALLGD_00021 10522 3 Skin 0.14 protein_coding synonymous_variant LOW 336C>T Gly112Gly
M0050484 NBJALLGD_00021 10528 3 Skin 0.14 protein_coding synonymous_variant LOW 330C>G Ala110Ala
M0050485 NBJALLGD_00021 10534 3 Skin 0.14 protein_coding synonymous_variant LOW 324C>T Asp108Asp
M0050486 NBJALLGD_00021 10541 3 Skin 0.14 protein_coding missense_variant MODERATE 317C>T Ala106Val
M0050487 NBJALLGD_00022 11048 3 Skin 0.14 protein_coding missense_variant MODERATE 29C>A Thr10Lys
M0050488 NBJALLGD_00027 13569 3 Skin 0.14 protein_coding synonymous_variant LOW 75G>A Ala25Ala
M0050489 NBJALLGD_00027 13596 4 Skin 0.18 protein_coding synonymous_variant LOW 102G>A Glu34Glu
M0050490 NBJALLGD_00027 13605 4 Skin 0.18 protein_coding synonymous_variant LOW 111G>C Ala37Ala
M0050491 NBJALLGD_00027 13611 3 Skin 0.14 protein_coding synonymous_variant LOW 117C>T Ile39Ile
M0050492 NBJALLGD_00027 13680 3 Skin 0.14 protein_coding synonymous_variant LOW 186A>G Lys62Lys
M0050493 NBJALLGD_00027 13689 3 Skin 0.14 protein_coding synonymous_variant LOW 195T>C Arg65Arg
M0050494 NBJALLGD_00027 13758 3 Skin 0.14 protein_coding synonymous_variant LOW 264C>T Asp88Asp
M0050495 NBJALLGD_00028 14017 3 Skin 0.14 protein_coding synonymous_variant LOW 210G>A Gly70Gly
M0050496 NBJALLGD_00028 14107 3 Skin 0.14 protein_coding synonymous_variant LOW 300T>G Gly100Gly
M0050497 NBJALLGD_00028 14333 3 Skin 0.14 protein_coding missense_variant MODERATE 526G>A Ala176Thr
M0050498 NBJALLGD_00028 14359 3 Skin 0.14 protein_coding synonymous_variant LOW 552G>A Val184Val
M0050499 NBJALLGD_00029 14379 3 Skin 0.14 protein_coding synonymous_variant LOW 15A>G Glu5Glu
M0050500 NBJALLGD_00029 14525 3 Skin 0.14 protein_coding missense_variant MODERATE 161C>T Ala54Val
M0050501 NBJALLGD_00030 15733 4 Skin 0.18 protein_coding synonymous_variant LOW 1065A>G Ala355Ala
M0050502 NBJALLGD_00030 15751 4 Skin 0.18 protein_coding synonymous_variant LOW 1083C>G Ser361Ser
M0050503 NBJALLGD_00030 15913 4 Skin 0.18 protein_coding synonymous_variant LOW 1245A>G Val415Val
M0050504 NBJALLGD_00031 16435 3 Skin 0.14 protein_coding synonymous_variant LOW 48A>G Ala16Ala
M0050505 NBJALLGD_00032 16866 3 Skin 0.14 protein_coding synonymous_variant LOW 43A>C Arg15Arg
M0050506 NBJALLGD_00032 17277 3 Skin 0.14 protein_coding missense_variant MODERATE 454T>G Leu152Val
M0050507 NBJALLGD_00032 17345 3 Skin 0.14 protein_coding synonymous_variant LOW 522G>T Leu174Leu
M0050508 NBJALLGD_00033 17581 3 Skin 0.14 protein_coding synonymous_variant LOW 57A>G Thr19Thr
M0050509 NBJALLGD_00033 17602 3 Skin 0.14 protein_coding synonymous_variant LOW 78C>A Ala26Ala
M0050510 NBJALLGD_00033 17728 4 Skin 0.18 protein_coding synonymous_variant LOW 204C>A Gly68Gly
M0050511 NBJALLGD_00033 17995 3 Skin 0.14 protein_coding synonymous_variant LOW 471G>C Val157Val
M0050512 NBJALLGD_00034 18179 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -245G>C None
M0050513 NBJALLGD_00034 18188 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -236G>C None
M0050514 NBJALLGD_00034 18227 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -197C>T None
M0050515 NBJALLGD_00034 18242 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -182C>G None
M0050516 NBJALLGD_00034 18287 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -137A>G None
M0050517 NBJALLGD_00034 18412 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -12A>G None
M0050518 NBJALLGD_00034 18651 4 Skin 0.18 protein_coding synonymous_variant LOW 228T>C Asp76Asp
M0050519 NBJALLGD_00034 18777 3 Skin 0.14 protein_coding synonymous_variant LOW 354G>A Glu118Glu
M0050520 NBJALLGD_00034 18780 3 Skin 0.14 protein_coding synonymous_variant LOW 357G>T Leu119Leu
M0050521 NBJALLGD_00034 18858 5 Skin 0.23 protein_coding synonymous_variant LOW 435A>G Pro145Pro
M0050522 NBJALLGD_00034 18879 5 Skin 0.23 protein_coding synonymous_variant LOW 456C>G Ala152Ala
M0050523 NBJALLGD_00034 18903 5 Skin 0.23 protein_coding synonymous_variant LOW 480C>G Leu160Leu
M0050524 NBJALLGD_00034 18945 4 Skin 0.18 protein_coding synonymous_variant LOW 522C>T Tyr174Tyr
M0050525 NBJALLGD_00034 19254 4 Skin 0.18 protein_coding synonymous_variant LOW 831C>G Leu277Leu
M0050526 NBJALLGD_00034 19269 4 Skin 0.18 protein_coding synonymous_variant LOW 846C>T Tyr282Tyr
M0050527 NBJALLGD_00034 19441 4 Skin 0.18 protein_coding missense_variant MODERATE 1018G>A Glu340Lys
M0050528 NBJALLGD_00034 19701 4 Skin 0.18 protein_coding synonymous_variant LOW 1278T>G Ser426Ser
M0050529 NBJALLGD_00035 19780 4 Skin 0.18 protein_coding missense_variant MODERATE 11A>T His4Leu
M0050530 NBJALLGD_00035 19854 3 Skin 0.14 protein_coding missense_variant MODERATE 85C>T His29Tyr
M0050531 NBJALLGD_00035 19869 3 Skin 0.14 protein_coding missense_variant MODERATE 100G>A Ala34Thr
M0050532 NBJALLGD_00035 19910 3 Skin 0.14 protein_coding synonymous_variant LOW 141A>G Ala47Ala
M0050533 NBJALLGD_00035 19916 3 Skin 0.14 protein_coding synonymous_variant LOW 147A>G Ala49Ala
M0050534 NBJALLGD_00035 19922 3 Skin 0.14 protein_coding synonymous_variant LOW 153G>A Ala51Ala
M0050535 NBJALLGD_00035 19970 3 Skin 0.14 protein_coding synonymous_variant LOW 201G>A Val67Val
M0050536 NBJALLGD_00035 20047 3 Skin 0.14 protein_coding missense_variant MODERATE 278C>A Thr93Lys
M0050537 NBJALLGD_00035 20162 4 Skin 0.18 protein_coding synonymous_variant LOW 393C>T Ile131Ile
M0050538 NBJALLGD_00035 20289 4 Skin 0.18 protein_coding missense_variant MODERATE 520G>A Ala174Thr
M0050539 NBJALLGD_00035 20522 3 Skin 0.14 protein_coding synonymous_variant LOW 753G>T Arg251Arg
M0050540 NBJALLGD_00035 20570 3 Skin 0.14 protein_coding synonymous_variant LOW 801G>A Pro267Pro
M0050541 NBJALLGD_00035 21005 3 Skin 0.14 protein_coding synonymous_variant LOW 1236T>A Leu412Leu
M0050542 NBJALLGD_00035 21359 3 Skin 0.14 protein_coding synonymous_variant LOW 1590G>A Leu530Leu
M0050543 NBJALLGD_00036 21749 4 Skin 0.18 protein_coding missense_variant MODERATE 64G>A Ala22Thr
M0050544 NBJALLGD_00036 21751 4 Skin 0.18 protein_coding synonymous_variant LOW 66C>A Ala22Ala
M0050545 NBJALLGD_00036 21982 4 Skin 0.18 protein_coding synonymous_variant LOW 297C>G Ala99Ala
M0050546 NBJALLGD_00036 22048 4 Skin 0.18 protein_coding synonymous_variant LOW 363C>G Val121Val
M0050547 NBJALLGD_00036 22126 4 Skin 0.18 protein_coding synonymous_variant LOW 441G>A Val147Val
M0050548 NBJALLGD_00036 22162 4 Skin 0.18 protein_coding synonymous_variant LOW 477G>C Ala159Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term