Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2644
  Reference Plasmid   1111525849858868_bin.26__k141_47097
  Reference Plasmid Size   10696
  Reference Plasmid GC Content   0.72
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0050549 EKCLNCOC_00001 171 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -349T>G None
M0050550 EKCLNCOC_00001 408 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -112A>G None
M0050551 EKCLNCOC_00001 543 3 Skin 0.21 protein_coding synonymous_variant LOW 24G>C Pro8Pro
M0050552 EKCLNCOC_00001 705 8 Skin 0.57 protein_coding missense_variant MODERATE 186G>C Arg62Ser
M0050553 EKCLNCOC_00004 801 9 Skin 0.64 protein_coding upstream_gene_variant MODIFIER -3515T>C None
M0050554 EKCLNCOC_00004 849 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3467T>C None
M0050555 EKCLNCOC_00004 873 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3443C>G None
M0050556 EKCLNCOC_00004 912 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3404A>G None
M0050557 EKCLNCOC_00004 957 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3359C>T None
M0050558 EKCLNCOC_00004 1062 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3254A>C None
M0050559 EKCLNCOC_00004 1068 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3248C>T None
M0050560 EKCLNCOC_00004 1086 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3230A>G None
M0050561 EKCLNCOC_00004 1089 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3227G>C None
M0050562 EKCLNCOC_00004 1107 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3209C>G None
M0050563 EKCLNCOC_00004 1116 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3200G>C None
M0050564 EKCLNCOC_00004 1129 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3187G>C None
M0050565 EKCLNCOC_00004 1130 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3186C>T None
M0050566 EKCLNCOC_00004 1143 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3173G>C None
M0050567 EKCLNCOC_00004 1158 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3158C>T None
M0050568 EKCLNCOC_00004 1167 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3149G>A None
M0050569 EKCLNCOC_00004 1179 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3137C>G None
M0050570 EKCLNCOC_00004 1185 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3131T>C None
M0050571 EKCLNCOC_00004 1437 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2879C>G None
M0050572 EKCLNCOC_00004 1587 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2729C>G None
M0050573 EKCLNCOC_00004 1611 10 Skin 0.71 protein_coding upstream_gene_variant MODIFIER -2705G>C None
M0050574 EKCLNCOC_00004 1731 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -2585A>G None
M0050575 EKCLNCOC_00004 1906 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2410C>G None
M0050576 EKCLNCOC_00004 1958 9 Skin 0.64 protein_coding upstream_gene_variant MODIFIER -2358G>T None
M0050577 EKCLNCOC_00002 2161 10 Skin 0.71 protein_coding synonymous_variant LOW 420C>T Arg140Arg
M0050578 EKCLNCOC_00002 2634 9 Skin 0.64 protein_coding upstream_gene_variant MODIFIER -54T>C None
M0050579 EKCLNCOC_00002 2655 9 Skin 0.64 protein_coding upstream_gene_variant MODIFIER -75C>A None
M0050580 EKCLNCOC_00002 2673 9 Skin 0.64 protein_coding upstream_gene_variant MODIFIER -93T>A None
M0050581 EKCLNCOC_00003 2931 11 Skin 0.79 protein_coding synonymous_variant LOW 1146T>C His382His
M0050582 EKCLNCOC_00003 3051 4 Skin 0.29 protein_coding synonymous_variant LOW 1026G>A Glu342Glu
M0050583 EKCLNCOC_00003 3444 5 Skin 0.36 protein_coding synonymous_variant LOW 633T>C Arg211Arg
M0050584 EKCLNCOC_00003 3456 5 Skin 0.36 protein_coding missense_variant MODERATE 621C>G Asp207Glu
M0050585 EKCLNCOC_00003 3526 5 Skin 0.36 protein_coding missense_variant MODERATE 551A>C Glu184Ala
M0050586 EKCLNCOC_00003 3764 10 Skin 0.71 protein_coding missense_variant MODERATE 313C>T Leu105Phe
M0050587 EKCLNCOC_00003 3819 6 Skin 0.43 protein_coding synonymous_variant LOW 258T>G Leu86Leu
M0050588 EKCLNCOC_00003 3841 6 Skin 0.43 protein_coding missense_variant MODERATE 236T>C Leu79Pro
M0050589 EKCLNCOC_00003 3843 6 Skin 0.43 protein_coding synonymous_variant LOW 234T>C Asp78Asp
M0050590 EKCLNCOC_00003 3937 5 Skin 0.36 protein_coding missense_variant MODERATE 140G>C Ser47Thr
M0050591 EKCLNCOC_00002 4112 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1532T>C None
M0050592 EKCLNCOC_00002 4126 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1546T>C None
M0050593 EKCLNCOC_00004 4337 6 Skin 0.43 protein_coding missense_variant MODERATE 22T>C Cys8Arg
M0050594 EKCLNCOC_00004 4459 5 Skin 0.36 protein_coding synonymous_variant LOW 144A>G Gly48Gly
M0050595 EKCLNCOC_00004 4465 6 Skin 0.43 protein_coding synonymous_variant LOW 150A>G Val50Val
M0050596 EKCLNCOC_00004 4562 3 Skin 0.21 protein_coding missense_variant MODERATE 247G>C Ala83Pro
M0050597 EKCLNCOC_00004 4730 3 Skin 0.21 protein_coding synonymous_variant LOW 415T>C Leu139Leu
M0050598 EKCLNCOC_00005 5420 3 Skin 0.21 protein_coding missense_variant MODERATE 62T>C Leu21Pro
M0050599 EKCLNCOC_00005 5584 3 Skin 0.21 protein_coding missense_variant MODERATE 226A>C Asn76His
M0050600 EKCLNCOC_00001 735 9 Skin 0.64 protein_coding synonymous_variant LOW 216T>C Pro72Pro
M0050601 EKCLNCOC_00004 1389 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2927C>T None
M0050602 EKCLNCOC_00003 3279 3 Skin 0.21 protein_coding synonymous_variant LOW 798C>G Val266Val
M0050603 EKCLNCOC_00003 2867 3 Skin 0.21 protein_coding synonymous_variant LOW 1210C>T Leu404Leu
M0050604 EKCLNCOC_00003 2868 3 Skin 0.21 protein_coding synonymous_variant LOW 1209G>C Gly403Gly
M0050605 EKCLNCOC_00003 3081 6 Skin 0.43 protein_coding synonymous_variant LOW 996C>T Ile332Ile
M0050606 EKCLNCOC_00003 3119 6 Skin 0.43 protein_coding missense_variant MODERATE 958G>A Glu320Lys
M0050607 EKCLNCOC_00003 3186 6 Skin 0.43 protein_coding synonymous_variant LOW 891G>C Gly297Gly
M0050608 EKCLNCOC_00003 3468 3 Skin 0.21 protein_coding synonymous_variant LOW 609C>G Thr203Thr
M0050609 EKCLNCOC_00003 3743 3 Skin 0.21 protein_coding missense_variant MODERATE 334A>G Ile112Val
M0050610 EKCLNCOC_00003 3779 7 Skin 0.50 protein_coding synonymous_variant LOW 298T>C Leu100Leu
M0050611 EKCLNCOC_00002 4130 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -1550G>A None
M0050612 EKCLNCOC_00002 4277 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -1697G>A None
M0050613 EKCLNCOC_00002 4290 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -1710C>T None
M0050614 EKCLNCOC_00001 159 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -361G>C None
M0050615 EKCLNCOC_00001 162 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -358G>A None
M0050616 EKCLNCOC_00001 591 5 Skin 0.36 protein_coding stop_gained HIGH 72G>A Trp24*
M0050617 EKCLNCOC_00004 920 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3396A>C None
M0050618 EKCLNCOC_00002 2179 6 Skin 0.43 protein_coding synonymous_variant LOW 402G>T Ala134Ala
M0050619 EKCLNCOC_00003 3698 5 Skin 0.36 protein_coding missense_variant MODERATE 379A>G Ile127Val
M0050620 EKCLNCOC_00002 2125 4 Skin 0.29 protein_coding synonymous_variant LOW 456C>G Thr152Thr
M0050621 EKCLNCOC_00004 5131 3 Skin 0.21 protein_coding synonymous_variant LOW 816C>G Ala272Ala
M0050622 EKCLNCOC_00004 897 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3419G>C None
M0050623 EKCLNCOC_00004 903 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3413A>G None
M0050624 EKCLNCOC_00004 906 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3410C>A None
M0050625 EKCLNCOC_00004 5002 3 Skin 0.21 protein_coding synonymous_variant LOW 687C>G Arg229Arg
M0050626 EKCLNCOC_00004 5005 3 Skin 0.21 protein_coding synonymous_variant LOW 690C>G Arg230Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term