Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2663
  Reference Plasmid   1111525849859453_bin.9__k141_144441
  Reference Plasmid Size   19688
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0052263 MILGCPIO_00010 5325 10 Skin 0.13 protein_coding missense_variant MODERATE 175A>G Thr59Ala
M0052264 MILGCPIO_00010 5423 8 Skin 0.10 protein_coding synonymous_variant LOW 273A>T Ile91Ile
M0052265 MILGCPIO_00010 5429 8 Skin 0.10 protein_coding synonymous_variant LOW 279G>A Gln93Gln
M0052266 MILGCPIO_00010 5453 8 Skin 0.10 protein_coding synonymous_variant LOW 303C>T Ile101Ile
M0052267 MILGCPIO_00010 5462 7 Skin 0.09 protein_coding synonymous_variant LOW 312T>C Thr104Thr
M0052268 MILGCPIO_00010 5486 8 Skin 0.10 protein_coding synonymous_variant LOW 336G>A Lys112Lys
M0052269 MILGCPIO_00010 5498 6 Skin 0.08 protein_coding synonymous_variant LOW 348A>G Gly116Gly
M0052270 MILGCPIO_00010 5504 8 Skin 0.10 protein_coding synonymous_variant LOW 354G>A Lys118Lys
M0052271 MILGCPIO_00010 5540 7 Skin 0.09 protein_coding synonymous_variant LOW 390T>C Gly130Gly
M0052272 MILGCPIO_00010 5789 10 Skin 0.13 protein_coding missense_variant MODERATE 639A>T Lys213Asn
M0052273 MILGCPIO_00010 5795 10 Skin 0.13 protein_coding synonymous_variant LOW 645A>G Lys215Lys
M0052274 MILGCPIO_00010 5799 9 Skin 0.11 protein_coding synonymous_variant LOW 649C>T Leu217Leu
M0052275 MILGCPIO_00010 5807 11 Skin 0.14 protein_coding synonymous_variant LOW 657T>C Asp219Asp
M0052276 MILGCPIO_00010 5870 11 Skin 0.14 protein_coding synonymous_variant LOW 720A>T Arg240Arg
M0052277 MILGCPIO_00011 6042 11 Skin 0.14 protein_coding missense_variant MODERATE 50A>C Tyr17Ser
M0052278 MILGCPIO_00011 6121 8 Skin 0.10 protein_coding synonymous_variant LOW 129A>T Gly43Gly
M0052279 MILGCPIO_00011 6124 7 Skin 0.09 protein_coding synonymous_variant LOW 132G>A Lys44Lys
M0052280 MILGCPIO_00011 6139 7 Skin 0.09 protein_coding synonymous_variant LOW 147T>C Asn49Asn
M0052281 MILGCPIO_00011 6142 7 Skin 0.09 protein_coding synonymous_variant LOW 150T>A Ile50Ile
M0052282 MILGCPIO_00011 6184 8 Skin 0.10 protein_coding synonymous_variant LOW 192T>C Phe64Phe
M0052283 MILGCPIO_00011 6190 8 Skin 0.10 protein_coding missense_variant MODERATE 198T>A Asn66Lys
M0052284 MILGCPIO_00011 6325 9 Skin 0.11 protein_coding synonymous_variant LOW 333C>T Asn111Asn
M0052285 MILGCPIO_00011 6439 12 Skin 0.15 protein_coding synonymous_variant LOW 447G>T Arg149Arg
M0052286 MILGCPIO_00011 6448 12 Skin 0.15 protein_coding synonymous_variant LOW 456T>C Ile152Ile
M0052287 MILGCPIO_00011 6463 12 Skin 0.15 protein_coding synonymous_variant LOW 471T>C Ile157Ile
M0052288 MILGCPIO_00011 6466 12 Skin 0.15 protein_coding synonymous_variant LOW 474C>T Asn158Asn
M0052289 MILGCPIO_00011 6472 9 Skin 0.11 protein_coding synonymous_variant LOW 480A>G Pro160Pro
M0052290 MILGCPIO_00011 6481 9 Skin 0.11 protein_coding synonymous_variant LOW 489A>T Ile163Ile
M0052291 MILGCPIO_00011 6544 8 Skin 0.10 protein_coding synonymous_variant LOW 552T>C Phe184Phe
M0052292 MILGCPIO_00011 6553 8 Skin 0.10 protein_coding synonymous_variant LOW 561G>A Leu187Leu
M0052293 MILGCPIO_00011 6571 8 Skin 0.10 protein_coding synonymous_variant LOW 579A>G Thr193Thr
M0052294 MILGCPIO_00011 6640 13 Skin 0.16 protein_coding synonymous_variant LOW 648C>T Asp216Asp
M0052295 MILGCPIO_00012 6847 16 Skin 0.20 protein_coding missense_variant MODERATE 176T>C Val59Ala
M0052296 MILGCPIO_00012 6945 8 Skin 0.10 protein_coding missense_variant MODERATE 274A>G Ile92Val
M0052297 MILGCPIO_00012 7025 14 Skin 0.18 protein_coding synonymous_variant LOW 354T>C Gly118Gly
M0052298 MILGCPIO_00012 7069 16 Skin 0.20 protein_coding missense_variant MODERATE 398G>A Gly133Asp
M0052299 MILGCPIO_00012 7076 13 Skin 0.16 protein_coding synonymous_variant LOW 405C>G Gly135Gly
M0052300 MILGCPIO_00012 7082 16 Skin 0.20 protein_coding synonymous_variant LOW 411A>T Gly137Gly
M0052301 MILGCPIO_00012 7089 16 Skin 0.20 protein_coding missense_variant MODERATE 418G>A Glu140Lys
M0052302 MILGCPIO_00012 7118 9 Skin 0.11 protein_coding synonymous_variant LOW 447T>C Val149Val
M0052303 MILGCPIO_00012 7157 9 Skin 0.11 protein_coding synonymous_variant LOW 486C>T Asn162Asn
M0052304 MILGCPIO_00012 7225 13 Skin 0.16 protein_coding missense_variant MODERATE 554A>G Asp185Gly
M0052305 MILGCPIO_00012 7231 4 Skin 0.05 protein_coding missense_variant MODERATE 560G>T Gly187Val
M0052306 MILGCPIO_00012 7235 6 Skin 0.08 protein_coding missense_variant MODERATE 564G>T Met188Ile
M0052307 MILGCPIO_00012 7373 9 Skin 0.11 protein_coding synonymous_variant LOW 702T>C Asp234Asp
M0052308 MILGCPIO_00012 7376 13 Skin 0.16 protein_coding synonymous_variant LOW 705C>T Val235Val
M0052309 MILGCPIO_00012 7427 10 Skin 0.13 protein_coding synonymous_variant LOW 756A>G Glu252Glu
M0052310 MILGCPIO_00012 7601 12 Skin 0.15 protein_coding synonymous_variant LOW 930T>C Ile310Ile
M0052311 MILGCPIO_00012 7616 7 Skin 0.09 protein_coding synonymous_variant LOW 945T>C Gly315Gly
M0052312 MILGCPIO_00012 7619 7 Skin 0.09 protein_coding synonymous_variant LOW 948C>T Ala316Ala
M0052313 MILGCPIO_00012 7634 7 Skin 0.09 protein_coding synonymous_variant LOW 963C>A Ile321Ile
M0052314 MILGCPIO_00012 7688 8 Skin 0.10 protein_coding synonymous_variant LOW 1017C>T Ile339Ile
M0052315 MILGCPIO_00012 7715 9 Skin 0.11 protein_coding synonymous_variant LOW 1044A>G Ala348Ala
M0052316 MILGCPIO_00012 7719 10 Skin 0.13 protein_coding synonymous_variant LOW 1048T>C Leu350Leu
M0052317 MILGCPIO_00012 7728 9 Skin 0.11 protein_coding missense_variant MODERATE 1057C>G Leu353Val
M0052318 MILGCPIO_00012 7729 9 Skin 0.11 protein_coding missense_variant MODERATE 1058T>C Leu353Pro
M0052319 MILGCPIO_00012 7730 13 Skin 0.16 protein_coding synonymous_variant LOW 1059C>T Leu353Leu
M0052320 MILGCPIO_00012 7733 10 Skin 0.13 protein_coding synonymous_variant LOW 1062T>G Val354Val
M0052321 MILGCPIO_00012 7736 9 Skin 0.11 protein_coding synonymous_variant LOW 1065A>G Thr355Thr
M0052322 MILGCPIO_00012 7742 13 Skin 0.16 protein_coding synonymous_variant LOW 1071G>A Glu357Glu
M0052323 MILGCPIO_00012 7751 9 Skin 0.11 protein_coding synonymous_variant LOW 1080G>A Lys360Lys
M0052324 MILGCPIO_00012 7769 14 Skin 0.18 protein_coding synonymous_variant LOW 1098C>A Gly366Gly
M0052325 MILGCPIO_00012 7799 9 Skin 0.11 protein_coding synonymous_variant LOW 1128T>C Thr376Thr
M0052326 MILGCPIO_00012 7802 9 Skin 0.11 protein_coding synonymous_variant LOW 1131T>A Leu377Leu
M0052327 MILGCPIO_00012 7829 13 Skin 0.16 protein_coding synonymous_variant LOW 1158A>T Pro386Pro
M0052328 MILGCPIO_00008 7898 13 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -3634G>A None
M0052329 MILGCPIO_00018 16730 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3770T>A None
M0052330 MILGCPIO_00018 16734 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3774T>G None
M0052331 MILGCPIO_00018 16743 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3783T>A None
M0052332 MILGCPIO_00018 16782 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3822A>T None
M0052333 MILGCPIO_00018 16946 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3986G>A None
M0052334 MILGCPIO_00018 16995 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4035T>A None
M0052335 MILGCPIO_00018 17278 15 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -4318T>A None
M0052336 MILGCPIO_00023 17417 7 Skin 0.09 protein_coding synonymous_variant LOW 123T>C Tyr41Tyr
M0052337 MILGCPIO_00023 17432 5 Skin 0.06 protein_coding synonymous_variant LOW 138A>G Val46Val
M0052338 MILGCPIO_00023 17433 6 Skin 0.08 protein_coding synonymous_variant LOW 139C>T Leu47Leu
M0052339 MILGCPIO_00023 17447 7 Skin 0.09 protein_coding synonymous_variant LOW 153A>G Gly51Gly
M0052340 MILGCPIO_00023 17459 5 Skin 0.06 protein_coding synonymous_variant LOW 165T>A Pro55Pro
M0052341 MILGCPIO_00023 17483 5 Skin 0.06 protein_coding synonymous_variant LOW 189C>T Asp63Asp
M0052342 MILGCPIO_00023 17492 8 Skin 0.10 protein_coding synonymous_variant LOW 198A>G Gly66Gly
M0052343 MILGCPIO_00023 17514 4 Skin 0.05 protein_coding missense_variant MODERATE 220G>A Asp74Asn
M0052344 MILGCPIO_00023 17520 5 Skin 0.06 protein_coding missense_variant MODERATE 226A>G Lys76Glu
M0052345 MILGCPIO_00024 17830 10 Skin 0.13 protein_coding synonymous_variant LOW 141G>A Ser47Ser
M0052346 MILGCPIO_00024 17832 3 Skin 0.04 protein_coding missense_variant MODERATE 143C>T Ser48Leu
M0052347 MILGCPIO_00024 18144 3 Skin 0.04 protein_coding missense_variant MODERATE 455C>A Ala152Asp
M0052348 MILGCPIO_00024 18309 4 Skin 0.05 protein_coding missense_variant MODERATE 620G>A Gly207Asp
M0052349 MILGCPIO_00025 18695 10 Skin 0.13 protein_coding missense_variant MODERATE 137G>A Arg46Lys
M0052350 MILGCPIO_00025 18705 11 Skin 0.14 protein_coding synonymous_variant LOW 147T>C Val49Val
M0052351 MILGCPIO_00025 18711 11 Skin 0.14 protein_coding synonymous_variant LOW 153T>A Arg51Arg
M0052352 MILGCPIO_00025 18750 11 Skin 0.14 protein_coding synonymous_variant LOW 192A>C Val64Val
M0052353 MILGCPIO_00025 18759 11 Skin 0.14 protein_coding synonymous_variant LOW 201T>C Phe67Phe
M0052354 MILGCPIO_00025 18902 9 Skin 0.11 protein_coding missense_variant MODERATE 344T>G Val115Gly
M0052355 MILGCPIO_00026 19398 6 Skin 0.08 protein_coding synonymous_variant LOW 279C>T Ala93Ala
M0052356 MILGCPIO_00026 19497 6 Skin 0.08 protein_coding synonymous_variant LOW 180T>C Phe60Phe
M0052357 MILGCPIO_00026 19524 5 Skin 0.06 protein_coding synonymous_variant LOW 153T>C His51His
M0052358 MILGCPIO_00026 19539 6 Skin 0.08 protein_coding synonymous_variant LOW 138T>G Thr46Thr
M0052359 MILGCPIO_00026 19545 6 Skin 0.08 protein_coding synonymous_variant LOW 132C>T Val44Val
M0052360 MILGCPIO_00026 19554 6 Skin 0.08 protein_coding synonymous_variant LOW 123T>C Ile41Ile
M0052361 MILGCPIO_00026 19557 6 Skin 0.08 protein_coding synonymous_variant LOW 120G>A Leu40Leu
M0052362 MILGCPIO_00026 19560 6 Skin 0.08 protein_coding synonymous_variant LOW 117C>G Val39Val
M0052363 MILGCPIO_00026 19575 6 Skin 0.08 protein_coding synonymous_variant LOW 102C>T Ile34Ile
M0052364 MILGCPIO_00026 19584 6 Skin 0.08 protein_coding synonymous_variant LOW 93A>C Leu31Leu
M0052365 MILGCPIO_00026 19590 6 Skin 0.08 protein_coding synonymous_variant LOW 87A>C Arg29Arg
M0052366 MILGCPIO_00008 8481 11 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4217T>A None
M0052367 MILGCPIO_00008 8489 11 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4225T>A None
M0052368 MILGCPIO_00008 8981 8 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4717T>G None
M0052369 MILGCPIO_00008 8992 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4728A>T None
M0052370 MILGCPIO_00015 9377 14 Skin 0.18 protein_coding synonymous_variant LOW 312T>A Thr104Thr
M0052371 MILGCPIO_00014 10152 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -1187G>A None
M0052372 MILGCPIO_00014 10154 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -1189G>T None
M0052373 MILGCPIO_00014 10193 13 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -1228G>A None
M0052374 MILGCPIO_00017 11515 35 Skin 0.44 protein_coding synonymous_variant LOW 1140A>T Ala380Ala
M0052375 MILGCPIO_00017 11284 3 Skin 0.04 protein_coding synonymous_variant LOW 909G>A Pro303Pro
M0052376 MILGCPIO_00017 11285 3 Skin 0.04 protein_coding missense_variant MODERATE 910A>C Lys304Gln
M0052377 MILGCPIO_00017 11363 6 Skin 0.08 protein_coding missense_variant MODERATE 988C>T Pro330Ser
M0052378 MILGCPIO_00017 11367 6 Skin 0.08 protein_coding missense_variant MODERATE 992C>T Thr331Ile
M0052379 MILGCPIO_00017 11373 6 Skin 0.08 protein_coding missense_variant MODERATE 998A>G Lys333Arg
M0052380 MILGCPIO_00017 11385 6 Skin 0.08 protein_coding missense_variant MODERATE 1010T>C Met337Thr
M0052381 MILGCPIO_00017 11390 6 Skin 0.08 protein_coding missense_variant MODERATE 1015C>G Gln339Glu
M0052382 MILGCPIO_00017 11391 6 Skin 0.08 protein_coding missense_variant MODERATE 1016A>T Gln339Leu
M0052383 MILGCPIO_00017 11410 7 Skin 0.09 protein_coding synonymous_variant LOW 1035G>A Thr345Thr
M0052384 MILGCPIO_00017 11457 10 Skin 0.13 protein_coding missense_variant MODERATE 1082A>C Glu361Ala
M0052385 MILGCPIO_00017 11938 20 Skin 0.25 protein_coding synonymous_variant LOW 1563C>T Gly521Gly
M0052386 MILGCPIO_00017 12025 4 Skin 0.05 protein_coding synonymous_variant LOW 1650T>C Pro550Pro
M0052387 MILGCPIO_00017 12308 25 Skin 0.32 protein_coding missense_variant MODERATE 1933A>G Thr645Ala
M0052388 MILGCPIO_00019 13127 14 Skin 0.18 protein_coding missense_variant MODERATE 1759G>A Val587Ile
M0052389 MILGCPIO_00019 13128 14 Skin 0.18 protein_coding missense_variant MODERATE 1758T>G His586Gln
M0052390 MILGCPIO_00019 13130 14 Skin 0.18 protein_coding missense_variant MODERATE 1756C>A His586Asn
M0052391 MILGCPIO_00019 14185 13 Skin 0.16 protein_coding missense_variant MODERATE 701T>C Val234Ala
M0052392 MILGCPIO_00019 14188 13 Skin 0.16 protein_coding missense_variant MODERATE 698T>C Leu233Ser
M0052393 MILGCPIO_00019 14192 13 Skin 0.16 protein_coding missense_variant MODERATE 694G>A Ala232Thr
M0052394 MILGCPIO_00019 14193 19 Skin 0.24 protein_coding missense_variant MODERATE 693G>A Met231Ile
M0052395 MILGCPIO_00019 14194 13 Skin 0.16 protein_coding missense_variant MODERATE 692T>A Met231Lys
M0052396 MILGCPIO_00020 15034 15 Skin 0.19 protein_coding synonymous_variant LOW 600A>T Thr200Thr
M0052397 MILGCPIO_00020 15037 15 Skin 0.19 protein_coding synonymous_variant LOW 597G>T Val199Val
M0052398 MILGCPIO_00020 15043 15 Skin 0.19 protein_coding synonymous_variant LOW 591C>T Ile197Ile
M0052399 MILGCPIO_00020 15464 15 Skin 0.19 protein_coding missense_variant MODERATE 170A>C Asn57Thr
M0052400 MILGCPIO_00018 15749 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -2789A>G None
M0052401 MILGCPIO_00021 15814 11 Skin 0.14 protein_coding synonymous_variant LOW 381A>T Ala127Ala
M0052402 MILGCPIO_00021 15822 6 Skin 0.08 protein_coding missense_variant MODERATE 373G>A Glu125Lys
M0052403 MILGCPIO_00021 15829 6 Skin 0.08 protein_coding missense_variant MODERATE 366G>T Glu122Asp
M0052404 MILGCPIO_00021 15882 10 Skin 0.13 protein_coding synonymous_variant LOW 313C>T Leu105Leu
M0052405 MILGCPIO_00021 15925 5 Skin 0.06 protein_coding synonymous_variant LOW 270C>T Thr90Thr
M0052406 MILGCPIO_00021 15928 5 Skin 0.06 protein_coding synonymous_variant LOW 267C>T Ile89Ile
M0052407 MILGCPIO_00021 15941 5 Skin 0.06 protein_coding missense_variant MODERATE 254A>G Asp85Gly
M0052408 MILGCPIO_00018 16628 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3668A>T None
M0052409 MILGCPIO_00018 16653 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3693C>G None
M0052410 MILGCPIO_00018 16655 7 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -3695G>A None
M0052411 MILGCPIO_00017 11794 10 Skin 0.13 protein_coding synonymous_variant LOW 1419A>T Thr473Thr
M0052412 MILGCPIO_00017 11797 10 Skin 0.13 protein_coding synonymous_variant LOW 1422T>C Tyr474Tyr
M0052413 MILGCPIO_00017 11923 10 Skin 0.13 protein_coding synonymous_variant LOW 1548T>C Tyr516Tyr
M0052414 MILGCPIO_00017 12010 21 Skin 0.27 protein_coding synonymous_variant LOW 1635T>A Pro545Pro
M0052415 MILGCPIO_00018 12773 19 Skin 0.24 protein_coding missense_variant MODERATE 188C>A Ala63Asp
M0052416 MILGCPIO_00018 12836 9 Skin 0.11 protein_coding missense_variant MODERATE 125C>T Ala42Val
M0052417 MILGCPIO_00014 13000 20 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4035T>G None
M0052418 MILGCPIO_00019 13053 17 Skin 0.22 protein_coding synonymous_variant LOW 1833C>T Ala611Ala
M0052419 MILGCPIO_00019 13062 9 Skin 0.11 protein_coding synonymous_variant LOW 1824T>C Leu608Leu
M0052420 MILGCPIO_00019 13105 9 Skin 0.11 protein_coding missense_variant MODERATE 1781C>T Ala594Val
M0052421 MILGCPIO_00019 13110 12 Skin 0.15 protein_coding synonymous_variant LOW 1776G>A Thr592Thr
M0052422 MILGCPIO_00019 13302 7 Skin 0.09 protein_coding synonymous_variant LOW 1584T>C Ile528Ile
M0052423 MILGCPIO_00019 13772 5 Skin 0.06 protein_coding missense_variant MODERATE 1114G>T Asp372Tyr
M0052424 MILGCPIO_00019 13777 9 Skin 0.11 protein_coding missense_variant MODERATE 1109T>C Leu370Ser
M0052425 MILGCPIO_00019 14505 12 Skin 0.15 protein_coding synonymous_variant LOW 381A>T Ser127Ser
M0052426 MILGCPIO_00019 14589 5 Skin 0.06 protein_coding synonymous_variant LOW 297T>C Asn99Asn
M0052427 MILGCPIO_00019 14598 5 Skin 0.06 protein_coding synonymous_variant LOW 288A>G Thr96Thr
M0052428 MILGCPIO_00019 14634 8 Skin 0.10 protein_coding synonymous_variant LOW 252A>G Thr84Thr
M0052429 MILGCPIO_00019 14649 8 Skin 0.10 protein_coding synonymous_variant LOW 237C>T Phe79Phe
M0052430 MILGCPIO_00019 14655 8 Skin 0.10 protein_coding synonymous_variant LOW 231C>T His77His
M0052431 MILGCPIO_00019 14682 9 Skin 0.11 protein_coding synonymous_variant LOW 204T>C Ile68Ile
M0052432 MILGCPIO_00019 14691 9 Skin 0.11 protein_coding synonymous_variant LOW 195C>T Phe65Phe
M0052433 MILGCPIO_00019 14725 9 Skin 0.11 protein_coding missense_variant MODERATE 161A>G Gln54Arg
M0052434 MILGCPIO_00019 14734 9 Skin 0.11 protein_coding missense_variant MODERATE 152C>G Ala51Gly
M0052435 MILGCPIO_00019 14743 9 Skin 0.11 protein_coding missense_variant MODERATE 143C>G Thr48Ser
M0052436 MILGCPIO_00019 14744 9 Skin 0.11 protein_coding missense_variant MODERATE 142A>G Thr48Ala
M0052437 MILGCPIO_00019 14817 17 Skin 0.22 protein_coding synonymous_variant LOW 69T>C Phe23Phe
M0052438 MILGCPIO_00004 1990 5 Skin 0.06 protein_coding synonymous_variant LOW 417T>C His139His
M0052439 MILGCPIO_00002 4018 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2911T>C None
M0052440 MILGCPIO_00010 5270 3 Skin 0.04 protein_coding synonymous_variant LOW 120G>A Leu40Leu
M0052441 MILGCPIO_00010 5297 3 Skin 0.04 protein_coding synonymous_variant LOW 147C>T Ser49Ser
M0052442 MILGCPIO_00010 5301 3 Skin 0.04 protein_coding synonymous_variant LOW 151T>C Leu51Leu
M0052443 MILGCPIO_00010 5303 3 Skin 0.04 protein_coding missense_variant MODERATE 153A>C Leu51Phe
M0052444 MILGCPIO_00010 5306 3 Skin 0.04 protein_coding synonymous_variant LOW 156C>T Asn52Asn
M0052445 MILGCPIO_00010 5333 3 Skin 0.04 protein_coding synonymous_variant LOW 183C>T His61His
M0052446 MILGCPIO_00010 5675 3 Skin 0.04 protein_coding synonymous_variant LOW 525G>A Val175Val
M0052447 MILGCPIO_00010 5705 3 Skin 0.04 protein_coding synonymous_variant LOW 555C>T Asp185Asp
M0052448 MILGCPIO_00010 5738 4 Skin 0.05 protein_coding synonymous_variant LOW 588A>G Leu196Leu
M0052449 MILGCPIO_00011 6208 3 Skin 0.04 protein_coding synonymous_variant LOW 216T>C Ser72Ser
M0052450 MILGCPIO_00012 7274 4 Skin 0.05 protein_coding synonymous_variant LOW 603A>G Val201Val
M0052451 MILGCPIO_00012 7286 5 Skin 0.06 protein_coding synonymous_variant LOW 615A>T Thr205Thr
M0052452 MILGCPIO_00012 7292 5 Skin 0.06 protein_coding synonymous_variant LOW 621A>G Thr207Thr
M0052453 MILGCPIO_00012 7598 5 Skin 0.06 protein_coding synonymous_variant LOW 927G>A Ala309Ala
M0052454 MILGCPIO_00012 7649 5 Skin 0.06 protein_coding synonymous_variant LOW 978A>G Leu326Leu
M0052455 MILGCPIO_00012 7661 5 Skin 0.06 protein_coding synonymous_variant LOW 990G>T Val330Val
M0052456 MILGCPIO_00012 7664 5 Skin 0.06 protein_coding synonymous_variant LOW 993C>T Val331Val
M0052457 MILGCPIO_00012 7703 5 Skin 0.06 protein_coding synonymous_variant LOW 1032T>A Gly344Gly
M0052458 MILGCPIO_00008 8027 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3763A>G None
M0052459 MILGCPIO_00008 8078 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3814A>G None
M0052460 MILGCPIO_00013 8193 3 Skin 0.04 protein_coding synonymous_variant LOW 72A>T Val24Val
M0052461 MILGCPIO_00008 8418 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4154C>T None
M0052462 MILGCPIO_00008 8432 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4168C>G None
M0052463 MILGCPIO_00008 8463 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4199C>T None
M0052464 MILGCPIO_00008 8533 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4269G>A None
M0052465 MILGCPIO_00008 8972 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4708A>G None
M0052466 MILGCPIO_00008 9004 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4740A>G None
M0052467 MILGCPIO_00008 9056 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4792A>C None
M0052468 MILGCPIO_00008 9059 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4795C>A None
M0052469 MILGCPIO_00015 9072 3 Skin 0.04 protein_coding missense_variant MODERATE 7A>T Asn3Tyr
M0052470 MILGCPIO_00015 9073 4 Skin 0.05 protein_coding missense_variant MODERATE 8A>T Asn3Ile
M0052471 MILGCPIO_00015 9079 4 Skin 0.05 protein_coding missense_variant MODERATE 14T>C Leu5Ser
M0052472 MILGCPIO_00016 10030 9 Skin 0.11 protein_coding synonymous_variant LOW 108A>G Val36Val
M0052473 MILGCPIO_00017 10630 12 Skin 0.15 protein_coding synonymous_variant LOW 255G>C Ser85Ser
M0052474 MILGCPIO_00017 10710 16 Skin 0.20 protein_coding missense_variant MODERATE 335G>A Arg112His
M0052475 MILGCPIO_00017 10767 16 Skin 0.20 protein_coding missense_variant MODERATE 392T>C Ile131Thr
M0052476 MILGCPIO_00017 10784 8 Skin 0.10 protein_coding missense_variant MODERATE 409T>C Ser137Pro
M0052477 MILGCPIO_00017 10811 16 Skin 0.20 protein_coding missense_variant MODERATE 436G>A Glu146Lys
M0052478 MILGCPIO_00017 10959 7 Skin 0.09 protein_coding missense_variant MODERATE 584T>C Ile195Thr
M0052479 MILGCPIO_00017 11011 10 Skin 0.13 protein_coding synonymous_variant LOW 636A>G Glu212Glu
M0052480 MILGCPIO_00017 11026 9 Skin 0.11 protein_coding synonymous_variant LOW 651T>A Thr217Thr
M0052481 MILGCPIO_00017 11032 9 Skin 0.11 protein_coding synonymous_variant LOW 657G>A Ser219Ser
M0052482 MILGCPIO_00017 11037 9 Skin 0.11 protein_coding missense_variant MODERATE 662A>G Asp221Gly
M0052483 MILGCPIO_00017 11046 10 Skin 0.13 protein_coding missense_variant MODERATE 671G>A Gly224Asp
M0052484 MILGCPIO_00017 11047 9 Skin 0.11 protein_coding synonymous_variant LOW 672C>A Gly224Gly
M0052485 MILGCPIO_00017 11049 9 Skin 0.11 protein_coding missense_variant MODERATE 674C>T Pro225Leu
M0052486 MILGCPIO_00017 11050 9 Skin 0.11 protein_coding synonymous_variant LOW 675T>A Pro225Pro
M0052487 MILGCPIO_00017 11060 9 Skin 0.11 protein_coding missense_variant MODERATE 685C>A Pro229Thr
M0052488 MILGCPIO_00019 13322 3 Skin 0.04 protein_coding missense_variant MODERATE 1564G>T Ala522Ser
M0052489 MILGCPIO_00017 11677 20 Skin 0.25 protein_coding synonymous_variant LOW 1302A>T Gly434Gly
M0052490 MILGCPIO_00018 12802 9 Skin 0.11 protein_coding synonymous_variant LOW 159C>T Tyr53Tyr
M0052491 MILGCPIO_00018 12865 10 Skin 0.13 protein_coding synonymous_variant LOW 96C>T Phe32Phe
M0052492 MILGCPIO_00018 12871 10 Skin 0.13 protein_coding synonymous_variant LOW 90C>T Ile30Ile
M0052493 MILGCPIO_00019 13155 4 Skin 0.05 protein_coding synonymous_variant LOW 1731G>A Ala577Ala
M0052494 MILGCPIO_00019 13173 3 Skin 0.04 protein_coding synonymous_variant LOW 1713T>C Ile571Ile
M0052495 MILGCPIO_00019 13197 3 Skin 0.04 protein_coding missense_variant MODERATE 1689A>T Leu563Phe
M0052496 MILGCPIO_00019 13199 3 Skin 0.04 protein_coding synonymous_variant LOW 1687T>C Leu563Leu
M0052497 MILGCPIO_00019 13215 3 Skin 0.04 protein_coding synonymous_variant LOW 1671G>A Gly557Gly
M0052498 MILGCPIO_00019 13444 3 Skin 0.04 protein_coding missense_variant MODERATE 1442G>A Arg481His
M0052499 MILGCPIO_00019 13470 11 Skin 0.14 protein_coding synonymous_variant LOW 1416T>C His472His
M0052500 MILGCPIO_00019 13495 9 Skin 0.11 protein_coding missense_variant MODERATE 1391A>G His464Arg
M0052501 MILGCPIO_00019 13498 9 Skin 0.11 protein_coding missense_variant MODERATE 1388C>T Ala463Val
M0052502 MILGCPIO_00019 14100 10 Skin 0.13 protein_coding synonymous_variant LOW 786T>A Ile262Ile
M0052503 MILGCPIO_00019 14121 3 Skin 0.04 protein_coding synonymous_variant LOW 765G>A Val255Val
M0052504 MILGCPIO_00019 14145 3 Skin 0.04 protein_coding synonymous_variant LOW 741T>G Ala247Ala
M0052505 MILGCPIO_00019 14151 3 Skin 0.04 protein_coding synonymous_variant LOW 735C>A Val245Val
M0052506 MILGCPIO_00019 14154 3 Skin 0.04 protein_coding synonymous_variant LOW 732T>C Ile244Ile
M0052507 MILGCPIO_00019 14181 3 Skin 0.04 protein_coding synonymous_variant LOW 705A>G Thr235Thr
M0052508 MILGCPIO_00020 15067 10 Skin 0.13 protein_coding synonymous_variant LOW 567T>C Asn189Asn
M0052509 MILGCPIO_00020 15130 8 Skin 0.10 protein_coding synonymous_variant LOW 504G>A Glu168Glu
M0052510 MILGCPIO_00020 15154 8 Skin 0.10 protein_coding synonymous_variant LOW 480A>G Lys160Lys
M0052511 MILGCPIO_00020 15337 3 Skin 0.04 protein_coding synonymous_variant LOW 297A>G Leu99Leu
M0052512 MILGCPIO_00020 15340 3 Skin 0.04 protein_coding synonymous_variant LOW 294T>A Thr98Thr
M0052513 MILGCPIO_00020 15367 9 Skin 0.11 protein_coding synonymous_variant LOW 267T>C Ile89Ile
M0052514 MILGCPIO_00020 15400 9 Skin 0.11 protein_coding synonymous_variant LOW 234C>T Leu78Leu
M0052515 MILGCPIO_00020 15580 18 Skin 0.23 protein_coding synonymous_variant LOW 54A>G Lys18Lys
M0052516 MILGCPIO_00021 16123 5 Skin 0.06 protein_coding synonymous_variant LOW 72G>A Val24Val
M0052517 MILGCPIO_00021 16183 4 Skin 0.05 protein_coding synonymous_variant LOW 12A>G Leu4Leu
M0052518 MILGCPIO_00021 16186 4 Skin 0.05 protein_coding synonymous_variant LOW 9G>T Thr3Thr
M0052519 MILGCPIO_00021 16188 4 Skin 0.05 protein_coding missense_variant MODERATE 7A>G Thr3Ala
M0052520 MILGCPIO_00022 16472 5 Skin 0.06 protein_coding synonymous_variant LOW 138C>T Pro46Pro
M0052521 MILGCPIO_00022 16487 8 Skin 0.10 protein_coding missense_variant MODERATE 123T>A Phe41Leu
M0052522 MILGCPIO_00022 16504 8 Skin 0.10 protein_coding missense_variant MODERATE 106G>A Glu36Lys
M0052523 MILGCPIO_00022 16511 5 Skin 0.06 protein_coding synonymous_variant LOW 99A>C Pro33Pro
M0052524 MILGCPIO_00022 16522 5 Skin 0.06 protein_coding missense_variant MODERATE 88G>A Asp30Asn
M0052525 MILGCPIO_00022 16523 8 Skin 0.10 protein_coding synonymous_variant LOW 87T>C Gly29Gly
M0052526 MILGCPIO_00018 16819 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3859C>T None
M0052527 MILGCPIO_00018 16869 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3909T>C None
M0052528 MILGCPIO_00018 16883 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3923C>T None
M0052529 MILGCPIO_00018 16888 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3928C>A None
M0052530 MILGCPIO_00018 16933 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3973A>T None
M0052531 MILGCPIO_00018 16982 6 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4022T>A None
M0052532 MILGCPIO_00018 17010 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4050T>A None
M0052533 MILGCPIO_00023 17341 6 Skin 0.08 protein_coding missense_variant MODERATE 47C>T Thr16Ile
M0052534 MILGCPIO_00023 17345 5 Skin 0.06 protein_coding synonymous_variant LOW 51A>C Leu17Leu
M0052535 MILGCPIO_00023 17373 4 Skin 0.05 protein_coding missense_variant MODERATE 79G>A Glu27Lys
M0052536 MILGCPIO_00023 17381 4 Skin 0.05 protein_coding synonymous_variant LOW 87C>T Pro29Pro
M0052537 MILGCPIO_00023 17585 4 Skin 0.05 protein_coding synonymous_variant LOW 291T>C Ser97Ser
M0052538 MILGCPIO_00010 5182 3 Skin 0.04 protein_coding missense_variant MODERATE 32T>A Val11Glu
M0052539 MILGCPIO_00012 7193 4 Skin 0.05 protein_coding synonymous_variant LOW 522C>T Gly174Gly
M0052540 MILGCPIO_00008 7920 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3656T>A None
M0052541 MILGCPIO_00008 7924 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3660A>G None
M0052542 MILGCPIO_00008 7925 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3661A>T None
M0052543 MILGCPIO_00017 11593 11 Skin 0.14 protein_coding synonymous_variant LOW 1218C>T Tyr406Tyr
M0052544 MILGCPIO_00017 11731 7 Skin 0.09 protein_coding synonymous_variant LOW 1356C>A Gly452Gly
M0052545 MILGCPIO_00017 12556 3 Skin 0.04 protein_coding synonymous_variant LOW 2181A>T Ala727Ala
M0052546 MILGCPIO_00017 10562 4 Skin 0.05 protein_coding missense_variant MODERATE 187A>G Lys63Glu
M0052547 MILGCPIO_00017 10567 4 Skin 0.05 protein_coding missense_variant MODERATE 192A>T Glu64Asp
M0052548 MILGCPIO_00017 10578 4 Skin 0.05 protein_coding missense_variant MODERATE 203G>A Arg68Gln
M0052549 MILGCPIO_00017 10579 4 Skin 0.05 protein_coding synonymous_variant LOW 204G>A Arg68Arg
M0052550 MILGCPIO_00017 10580 4 Skin 0.05 protein_coding missense_variant MODERATE 205C>G Pro69Ala
M0052551 MILGCPIO_00017 10586 4 Skin 0.05 protein_coding missense_variant MODERATE 211G>A Glu71Lys
M0052552 MILGCPIO_00017 10594 4 Skin 0.05 protein_coding missense_variant MODERATE 219G>T Glu73Asp
M0052553 MILGCPIO_00017 10598 5 Skin 0.06 protein_coding missense_variant MODERATE 223T>A Ser75Thr
M0052554 MILGCPIO_00017 10606 4 Skin 0.05 protein_coding synonymous_variant LOW 231A>T Ser77Ser
M0052555 MILGCPIO_00017 10612 4 Skin 0.05 protein_coding synonymous_variant LOW 237T>C Thr79Thr
M0052556 MILGCPIO_00017 10685 6 Skin 0.08 protein_coding missense_variant MODERATE 310G>A Ala104Thr
M0052557 MILGCPIO_00017 10824 7 Skin 0.09 protein_coding missense_variant MODERATE 449C>T Ser150Leu
M0052558 MILGCPIO_00017 12220 6 Skin 0.08 protein_coding synonymous_variant LOW 1845A>T Ala615Ala
M0052559 MILGCPIO_00019 13266 7 Skin 0.09 protein_coding synonymous_variant LOW 1620C>T Asn540Asn
M0052560 MILGCPIO_00019 13340 6 Skin 0.08 protein_coding synonymous_variant LOW 1546C>T Leu516Leu
M0052561 MILGCPIO_00019 13353 6 Skin 0.08 protein_coding synonymous_variant LOW 1533A>T Thr511Thr
M0052562 MILGCPIO_00019 13356 6 Skin 0.08 protein_coding synonymous_variant LOW 1530T>A Val510Val
M0052563 MILGCPIO_00019 13443 8 Skin 0.10 protein_coding synonymous_variant LOW 1443C>T Arg481Arg
M0052564 MILGCPIO_00019 13711 8 Skin 0.10 protein_coding missense_variant MODERATE 1175A>G Asn392Ser
M0052565 MILGCPIO_00019 14087 7 Skin 0.09 protein_coding missense_variant MODERATE 799A>C Asn267His
M0052566 MILGCPIO_00020 15169 7 Skin 0.09 protein_coding synonymous_variant LOW 465A>T Arg155Arg
M0052567 MILGCPIO_00020 15172 7 Skin 0.09 protein_coding synonymous_variant LOW 462T>C Ala154Ala
M0052568 MILGCPIO_00020 15175 7 Skin 0.09 protein_coding synonymous_variant LOW 459G>C Ala153Ala
M0052569 MILGCPIO_00020 15196 9 Skin 0.11 protein_coding synonymous_variant LOW 438T>A Gly146Gly
M0052570 MILGCPIO_00020 15202 7 Skin 0.09 protein_coding synonymous_variant LOW 432T>A Ser144Ser
M0052571 MILGCPIO_00020 15244 16 Skin 0.20 protein_coding synonymous_variant LOW 390C>T Leu130Leu
M0052572 MILGCPIO_00020 15253 16 Skin 0.20 protein_coding synonymous_variant LOW 381T>C Thr127Thr
M0052573 MILGCPIO_00020 15283 14 Skin 0.18 protein_coding synonymous_variant LOW 351A>C Ser117Ser
M0052574 MILGCPIO_00020 15284 14 Skin 0.18 protein_coding stop_gained HIGH 350C>A Ser117*
M0052575 MILGCPIO_00020 15292 14 Skin 0.18 protein_coding synonymous_variant LOW 342C>T Ile114Ile
M0052576 MILGCPIO_00020 15592 9 Skin 0.11 protein_coding synonymous_variant LOW 42A>G Gly14Gly
M0052577 MILGCPIO_00022 16262 7 Skin 0.09 protein_coding missense_variant MODERATE 348A>C Glu116Asp
M0052578 MILGCPIO_00022 16280 8 Skin 0.10 protein_coding synonymous_variant LOW 330T>C Asn110Asn
M0052579 MILGCPIO_00005 2847 4 Skin 0.05 protein_coding synonymous_variant LOW 181T>C Leu61Leu
M0052580 MILGCPIO_00007 3931 3 Skin 0.04 protein_coding synonymous_variant LOW 525C>A Ile175Ile
M0052581 MILGCPIO_00012 6818 3 Skin 0.04 protein_coding synonymous_variant LOW 147A>T Ser49Ser
M0052582 MILGCPIO_00012 6821 3 Skin 0.04 protein_coding synonymous_variant LOW 150A>G Thr50Thr
M0052583 MILGCPIO_00012 6848 3 Skin 0.04 protein_coding synonymous_variant LOW 177G>A Val59Val
M0052584 MILGCPIO_00012 6866 3 Skin 0.04 protein_coding synonymous_variant LOW 195T>A Ser65Ser
M0052585 MILGCPIO_00012 6884 4 Skin 0.05 protein_coding synonymous_variant LOW 213G>A Glu71Glu
M0052586 MILGCPIO_00012 6911 4 Skin 0.05 protein_coding synonymous_variant LOW 240G>A Pro80Pro
M0052587 MILGCPIO_00012 6959 4 Skin 0.05 protein_coding synonymous_variant LOW 288G>A Lys96Lys
M0052588 MILGCPIO_00012 6961 4 Skin 0.05 protein_coding missense_variant MODERATE 290A>G Asn97Ser
M0052589 MILGCPIO_00012 6971 3 Skin 0.04 protein_coding synonymous_variant LOW 300A>C Ile100Ile
M0052590 MILGCPIO_00012 6989 3 Skin 0.04 protein_coding synonymous_variant LOW 318C>T Ser106Ser
M0052591 MILGCPIO_00012 7007 5 Skin 0.06 protein_coding synonymous_variant LOW 336C>T Ile112Ile
M0052592 MILGCPIO_00012 7253 4 Skin 0.05 protein_coding synonymous_variant LOW 582T>A Gly194Gly
M0052593 MILGCPIO_00012 7268 3 Skin 0.04 protein_coding synonymous_variant LOW 597A>G Ser199Ser
M0052594 MILGCPIO_00012 7271 3 Skin 0.04 protein_coding synonymous_variant LOW 600A>T Thr200Thr
M0052595 MILGCPIO_00012 7280 3 Skin 0.04 protein_coding synonymous_variant LOW 609C>T Leu203Leu
M0052596 MILGCPIO_00012 7364 3 Skin 0.04 protein_coding synonymous_variant LOW 693T>G Ala231Ala
M0052597 MILGCPIO_00012 7400 3 Skin 0.04 protein_coding synonymous_variant LOW 729G>A Leu243Leu
M0052598 MILGCPIO_00012 7722 4 Skin 0.05 protein_coding missense_variant MODERATE 1051A>G Ile351Val
M0052599 MILGCPIO_00012 7724 4 Skin 0.05 protein_coding missense_variant MODERATE 1053T>G Ile351Met
M0052600 MILGCPIO_00012 7760 4 Skin 0.05 protein_coding synonymous_variant LOW 1089C>T Val363Val
M0052601 MILGCPIO_00012 7772 4 Skin 0.05 protein_coding synonymous_variant LOW 1101C>T Ser367Ser
M0052602 MILGCPIO_00012 7775 4 Skin 0.05 protein_coding synonymous_variant LOW 1104A>T Val368Val
M0052603 MILGCPIO_00019 14294 7 Skin 0.09 protein_coding missense_variant MODERATE 592A>T Thr198Ser
M0052604 MILGCPIO_00019 14757 6 Skin 0.08 protein_coding synonymous_variant LOW 129C>T Ser43Ser
M0052605 MILGCPIO_00019 14760 6 Skin 0.08 protein_coding synonymous_variant LOW 126T>C His42His
M0052606 MILGCPIO_00019 14768 6 Skin 0.08 protein_coding missense_variant MODERATE 118T>C Tyr40His
M0052607 MILGCPIO_00020 15265 6 Skin 0.08 protein_coding synonymous_variant LOW 369T>C Tyr123Tyr
M0052608 MILGCPIO_00017 11022 6 Skin 0.08 protein_coding missense_variant MODERATE 647C>T Ser216Leu
M0052609 MILGCPIO_00017 11128 7 Skin 0.09 protein_coding missense_variant MODERATE 753A>C Glu251Asp
M0052610 MILGCPIO_00017 11203 8 Skin 0.10 protein_coding synonymous_variant LOW 828C>T Asp276Asp
M0052611 MILGCPIO_00017 11220 7 Skin 0.09 protein_coding missense_variant MODERATE 845C>T Ser282Phe
M0052612 MILGCPIO_00017 11294 9 Skin 0.11 protein_coding missense_variant MODERATE 919A>G Thr307Ala
M0052613 MILGCPIO_00019 13014 9 Skin 0.11 protein_coding synonymous_variant LOW 1872C>T Arg624Arg
M0052614 MILGCPIO_00019 13185 7 Skin 0.09 protein_coding synonymous_variant LOW 1701A>T Gly567Gly
M0052615 MILGCPIO_00019 13427 7 Skin 0.09 protein_coding missense_variant MODERATE 1459G>A Asp487Asn
M0052616 MILGCPIO_00017 10426 4 Skin 0.05 protein_coding synonymous_variant LOW 51A>C Val17Val
M0052617 MILGCPIO_00015 9338 4 Skin 0.05 protein_coding synonymous_variant LOW 273C>T Thr91Thr
M0052618 MILGCPIO_00015 9356 3 Skin 0.04 protein_coding missense_variant MODERATE 291T>A Asp97Glu
M0052619 MILGCPIO_00015 9357 3 Skin 0.04 protein_coding missense_variant MODERATE 292G>A Gly98Arg
M0052620 MILGCPIO_00016 10095 6 Skin 0.08 protein_coding missense_variant MODERATE 43A>G Ile15Val
M0052621 MILGCPIO_00016 10113 6 Skin 0.08 protein_coding missense_variant MODERATE 25A>G Asn9Asp
M0052622 MILGCPIO_00018 16738 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3778G>A None
M0052623 MILGCPIO_00018 16838 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3878A>C None
M0052624 MILGCPIO_00018 17030 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4070C>T None
M0052625 MILGCPIO_00018 17038 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4078A>G None
M0052626 MILGCPIO_00014 10294 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -1329T>A None
M0052627 MILGCPIO_00019 18401 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3516T>C None
M0052628 MILGCPIO_00025 18625 4 Skin 0.05 protein_coding missense_variant MODERATE 67A>C Thr23Pro
M0052629 MILGCPIO_00025 18626 4 Skin 0.05 protein_coding missense_variant MODERATE 68C>A Thr23Lys
M0052630 MILGCPIO_00025 19110 4 Skin 0.05 protein_coding synonymous_variant LOW 552C>T Phe184Phe
M0052631 MILGCPIO_00026 19224 4 Skin 0.05 protein_coding synonymous_variant LOW 453A>T Val151Val
M0052632 MILGCPIO_00026 19320 5 Skin 0.06 protein_coding synonymous_variant LOW 357A>G Val119Val
M0052633 MILGCPIO_00002 2461 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -1354T>A None
M0052634 MILGCPIO_00002 2462 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -1355A>G None
M0052635 MILGCPIO_00010 5252 3 Skin 0.04 protein_coding synonymous_variant LOW 102C>T Ser34Ser
M0052636 MILGCPIO_00015 9624 3 Skin 0.04 protein_coding missense_variant MODERATE 559G>A Ala187Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
MILGCPIO_00020 PHI:6579 VraD 75.4 4.3e-106 1 252 1.0000 1.0000 moths skin infection; food poisoning; respiratory disease involved in gallidermin and daptomycin resistance reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
MILGCPIO_00020 3.A.1.134.11 75.4 9.6e-106 1 252 1.0000 4.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily