Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2696
  Reference Plasmid   1111525849860954_bin.16__k141_266159
  Reference Plasmid Size   15881
  Reference Plasmid GC Content   0.59
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0130743 JKHBOPIA_00006 7837 7 Oral 0.58 protein_coding missense_variant MODERATE 502A>T Thr168Ser
M0130744 JKHBOPIA_00006 7871 7 Oral 0.58 protein_coding synonymous_variant LOW 468T>C Arg156Arg
M0130745 JKHBOPIA_00006 7877 6 Oral 0.50 protein_coding synonymous_variant LOW 462C>A Ser154Ser
M0130746 JKHBOPIA_00006 7879 6 Oral 0.50 protein_coding missense_variant MODERATE 460T>G Ser154Ala
M0130747 JKHBOPIA_00006 7895 8 Oral 0.67 protein_coding synonymous_variant LOW 444T>C Ile148Ile
M0130748 JKHBOPIA_00006 7952 5 Oral 0.42 protein_coding synonymous_variant LOW 387T>C Gly129Gly
M0130749 JKHBOPIA_00006 7961 7 Oral 0.58 protein_coding synonymous_variant LOW 378A>T Ala126Ala
M0130750 JKHBOPIA_00006 8021 4 Oral 0.33 protein_coding synonymous_variant LOW 318T>C Ile106Ile
M0130751 JKHBOPIA_00006 8023 3 Oral 0.25 protein_coding missense_variant MODERATE 316A>C Ile106Leu
M0130752 JKHBOPIA_00006 8039 7 Oral 0.58 protein_coding synonymous_variant LOW 300T>C Gly100Gly
M0130753 JKHBOPIA_00006 8072 7 Oral 0.58 protein_coding synonymous_variant LOW 267T>C Val89Val
M0130754 JKHBOPIA_00006 8102 9 Oral 0.75 protein_coding synonymous_variant LOW 237T>C Leu79Leu
M0130755 JKHBOPIA_00006 8150 8 Oral 0.67 protein_coding synonymous_variant LOW 189C>T Val63Val
M0130756 JKHBOPIA_00006 8262 7 Oral 0.58 protein_coding missense_variant MODERATE 77T>C Val26Ala
M0130757 JKHBOPIA_00004 8455 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2951C>T None
M0130758 JKHBOPIA_00007 8625 8 Oral 0.67 protein_coding missense_variant MODERATE 9G>C Glu3Asp
M0130759 JKHBOPIA_00007 8634 8 Oral 0.67 protein_coding synonymous_variant LOW 18T>C Pro6Pro
M0130760 JKHBOPIA_00007 8635 7 Oral 0.58 protein_coding missense_variant MODERATE 19C>T Pro7Ser
M0130761 JKHBOPIA_00007 8638 4 Oral 0.33 protein_coding missense_variant MODERATE 22C>T Pro8Ser
M0130762 JKHBOPIA_00007 8652 9 Oral 0.75 protein_coding synonymous_variant LOW 36G>T Pro12Pro
M0130763 JKHBOPIA_00007 8668 4 Oral 0.33 protein_coding missense_variant MODERATE 52G>A Glu18Lys
M0130764 JKHBOPIA_00007 8691 7 Oral 0.58 protein_coding synonymous_variant LOW 75G>A Glu25Glu
M0130765 JKHBOPIA_00007 8724 6 Oral 0.50 protein_coding synonymous_variant LOW 108C>T Gly36Gly
M0130766 JKHBOPIA_00007 8757 7 Oral 0.58 protein_coding synonymous_variant LOW 141T>C Arg47Arg
M0130767 JKHBOPIA_00007 8761 6 Oral 0.50 protein_coding missense_variant MODERATE 145A>G Ile49Val
M0130768 JKHBOPIA_00007 8762 6 Oral 0.50 protein_coding missense_variant MODERATE 146T>A Ile49Asn
M0130769 JKHBOPIA_00007 8763 6 Oral 0.50 protein_coding missense_variant MODERATE 147C>G Ile49Met
M0130770 JKHBOPIA_00007 8778 6 Oral 0.50 protein_coding synonymous_variant LOW 162A>G Ala54Ala
M0130771 JKHBOPIA_00007 8787 6 Oral 0.50 protein_coding synonymous_variant LOW 171T>G Ala57Ala
M0130772 JKHBOPIA_00007 8862 6 Oral 0.50 protein_coding synonymous_variant LOW 246T>C Val82Val
M0130773 JKHBOPIA_00007 8967 4 Oral 0.33 protein_coding synonymous_variant LOW 351T>A Arg117Arg
M0130774 JKHBOPIA_00007 9021 8 Oral 0.67 protein_coding synonymous_variant LOW 405A>G Ala135Ala
M0130775 JKHBOPIA_00007 9057 5 Oral 0.42 protein_coding synonymous_variant LOW 441T>C Ile147Ile
M0130776 JKHBOPIA_00007 9084 6 Oral 0.50 protein_coding synonymous_variant LOW 468T>C Pro156Pro
M0130777 JKHBOPIA_00007 9127 10 Oral 0.83 protein_coding missense_variant MODERATE 511A>G Ile171Val
M0130778 JKHBOPIA_00007 9222 6 Oral 0.50 protein_coding synonymous_variant LOW 606T>C Gly202Gly
M0130779 JKHBOPIA_00004 9351 7 Oral 0.58 protein_coding upstream_gene_variant MODIFIER -3847T>C None
M0130780 JKHBOPIA_00008 9605 7 Oral 0.58 protein_coding synonymous_variant LOW 849T>C Arg283Arg
M0130781 JKHBOPIA_00008 9968 6 Oral 0.50 protein_coding synonymous_variant LOW 486C>T Ile162Ile
M0130782 JKHBOPIA_00008 9980 6 Oral 0.50 protein_coding synonymous_variant LOW 474T>C Leu158Leu
M0130783 JKHBOPIA_00008 9983 6 Oral 0.50 protein_coding synonymous_variant LOW 471G>T Val157Val
M0130784 JKHBOPIA_00008 9988 6 Oral 0.50 protein_coding missense_variant MODERATE 466A>C Ile156Leu
M0130785 JKHBOPIA_00008 9989 6 Oral 0.50 protein_coding missense_variant MODERATE 465C>G Asn155Lys
M0130786 JKHBOPIA_00008 10010 8 Oral 0.67 protein_coding synonymous_variant LOW 444T>C Ile148Ile
M0130787 JKHBOPIA_00008 10136 5 Oral 0.42 protein_coding synonymous_variant LOW 318T>C Val106Val
M0130788 JKHBOPIA_00008 10169 7 Oral 0.58 protein_coding synonymous_variant LOW 285T>C Asp95Asp
M0130789 JKHBOPIA_00004 10492 7 Oral 0.58 protein_coding upstream_gene_variant MODIFIER -4988A>G None
M0130790 JKHBOPIA_00005 10510 8 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -3072A>T None
M0130791 JKHBOPIA_00005 10605 8 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -3167T>C None
M0130792 JKHBOPIA_00005 10624 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -3186T>A None
M0130793 JKHBOPIA_00005 10667 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -3229G>A None
M0130794 JKHBOPIA_00005 10683 7 Oral 0.58 protein_coding upstream_gene_variant MODIFIER -3245G>A None
M0130795 JKHBOPIA_00005 10702 7 Oral 0.58 protein_coding upstream_gene_variant MODIFIER -3264C>T None
M0130796 JKHBOPIA_00009 10765 7 Oral 0.58 protein_coding synonymous_variant LOW 48G>A Lys16Lys
M0130797 JKHBOPIA_00009 11008 7 Oral 0.58 protein_coding synonymous_variant LOW 291T>G Val97Val
M0130798 JKHBOPIA_00009 11011 7 Oral 0.58 protein_coding synonymous_variant LOW 294T>C Gly98Gly
M0130799 JKHBOPIA_00005 11222 9 Oral 0.75 protein_coding upstream_gene_variant MODIFIER -3784A>C None
M0130800 JKHBOPIA_00005 11251 9 Oral 0.75 protein_coding upstream_gene_variant MODIFIER -3813G>A None
M0130801 JKHBOPIA_00005 11254 9 Oral 0.75 protein_coding upstream_gene_variant MODIFIER -3816A>T None
M0130802 JKHBOPIA_00005 11257 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -3819G>A None
M0130803 JKHBOPIA_00005 11289 9 Oral 0.75 protein_coding upstream_gene_variant MODIFIER -3851G>A None
M0130804 JKHBOPIA_00005 11290 9 Oral 0.75 protein_coding upstream_gene_variant MODIFIER -3852C>T None
M0130805 JKHBOPIA_00005 11300 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -3862C>T None
M0130806 JKHBOPIA_00005 11333 9 Oral 0.75 protein_coding upstream_gene_variant MODIFIER -3895C>T None
M0130807 JKHBOPIA_00005 11341 9 Oral 0.75 protein_coding upstream_gene_variant MODIFIER -3903A>G None
M0130808 JKHBOPIA_00005 11343 8 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -3905T>C None
M0130809 JKHBOPIA_00005 11347 9 Oral 0.75 protein_coding upstream_gene_variant MODIFIER -3909C>T None
M0130810 JKHBOPIA_00010 11632 9 Oral 0.75 protein_coding synonymous_variant LOW 222T>C Tyr74Tyr
M0130811 JKHBOPIA_00010 11719 3 Oral 0.25 protein_coding synonymous_variant LOW 309C>G Ser103Ser
M0130812 JKHBOPIA_00010 11746 8 Oral 0.67 protein_coding synonymous_variant LOW 336A>G Lys112Lys
M0130813 JKHBOPIA_00010 11803 9 Oral 0.75 protein_coding synonymous_variant LOW 393T>A Ala131Ala
M0130814 JKHBOPIA_00010 11875 9 Oral 0.75 protein_coding synonymous_variant LOW 465A>G Gln155Gln
M0130815 JKHBOPIA_00010 11881 7 Oral 0.58 protein_coding synonymous_variant LOW 471T>C Leu157Leu
M0130816 JKHBOPIA_00010 11900 4 Oral 0.33 protein_coding missense_variant MODERATE 490A>G Ile164Val
M0130817 JKHBOPIA_00010 11902 3 Oral 0.25 protein_coding synonymous_variant LOW 492C>T Ile164Ile
M0130818 JKHBOPIA_00010 11911 3 Oral 0.25 protein_coding synonymous_variant LOW 501G>T Val167Val
M0130819 JKHBOPIA_00010 11915 3 Oral 0.25 protein_coding synonymous_variant LOW 505C>T Leu169Leu
M0130820 JKHBOPIA_00010 12047 7 Oral 0.58 protein_coding missense_variant MODERATE 637C>A Arg213Ser
M0130821 JKHBOPIA_00010 12048 7 Oral 0.58 protein_coding missense_variant MODERATE 638G>C Arg213Pro
M0130822 JKHBOPIA_00010 12059 7 Oral 0.58 protein_coding missense_variant MODERATE 649G>A Glu217Lys
M0130823 JKHBOPIA_00010 12060 7 Oral 0.58 protein_coding missense_variant MODERATE 650A>G Glu217Gly
M0130824 JKHBOPIA_00010 12061 7 Oral 0.58 protein_coding missense_variant MODERATE 651A>C Glu217Asp
M0130825 JKHBOPIA_00010 12064 7 Oral 0.58 protein_coding synonymous_variant LOW 654C>T Leu218Leu
M0130826 JKHBOPIA_00010 12097 4 Oral 0.33 protein_coding synonymous_variant LOW 687T>C Gly229Gly
M0130827 JKHBOPIA_00010 12103 8 Oral 0.67 protein_coding synonymous_variant LOW 693C>T Leu231Leu
M0130828 JKHBOPIA_00010 12439 9 Oral 0.75 protein_coding synonymous_variant LOW 1029C>G Ser343Ser
M0130829 JKHBOPIA_00010 12610 8 Oral 0.67 protein_coding synonymous_variant LOW 1200T>C Thr400Thr
M0130830 JKHBOPIA_00010 12664 9 Oral 0.75 protein_coding synonymous_variant LOW 1254T>C Val418Val
M0130831 JKHBOPIA_00010 12667 4 Oral 0.33 protein_coding synonymous_variant LOW 1257C>T Gly419Gly
M0130832 JKHBOPIA_00010 12668 9 Oral 0.75 protein_coding missense_variant MODERATE 1258A>G Lys420Glu
M0130833 JKHBOPIA_00010 12766 5 Oral 0.42 protein_coding synonymous_variant LOW 1356T>G Ala452Ala
M0130834 JKHBOPIA_00010 12781 4 Oral 0.33 protein_coding synonymous_variant LOW 1371C>G Val457Val
M0130835 JKHBOPIA_00010 12809 4 Oral 0.33 protein_coding missense_variant MODERATE 1399C>G Leu467Val
M0130836 JKHBOPIA_00010 12941 6 Oral 0.50 protein_coding missense_variant MODERATE 1531C>T Pro511Ser
M0130837 JKHBOPIA_00010 12952 6 Oral 0.50 protein_coding synonymous_variant LOW 1542T>C Arg514Arg
M0130838 JKHBOPIA_00011 13457 9 Oral 0.75 protein_coding synonymous_variant LOW 162T>C Val54Val
M0130839 JKHBOPIA_00011 13502 9 Oral 0.75 protein_coding synonymous_variant LOW 207T>C Ser69Ser
M0130840 JKHBOPIA_00011 13556 9 Oral 0.75 protein_coding synonymous_variant LOW 261G>A Ala87Ala
M0130841 JKHBOPIA_00011 13616 5 Oral 0.42 protein_coding synonymous_variant LOW 321C>G Pro107Pro
M0130842 JKHBOPIA_00011 13650 9 Oral 0.75 protein_coding synonymous_variant LOW 355T>C Leu119Leu
M0130843 JKHBOPIA_00011 13661 4 Oral 0.33 protein_coding synonymous_variant LOW 366T>G Ala122Ala
M0130844 JKHBOPIA_00011 13736 8 Oral 0.67 protein_coding synonymous_variant LOW 441T>G Ser147Ser
M0130845 JKHBOPIA_00011 13769 7 Oral 0.58 protein_coding synonymous_variant LOW 474G>T Ala158Ala
M0130846 JKHBOPIA_00011 13803 9 Oral 0.75 protein_coding missense_variant MODERATE 508A>G Ile170Val
M0130847 JKHBOPIA_00011 13808 7 Oral 0.58 protein_coding synonymous_variant LOW 513C>T Asp171Asp
M0130848 JKHBOPIA_00011 13835 8 Oral 0.67 protein_coding synonymous_variant LOW 540C>T Arg180Arg
M0130849 JKHBOPIA_00011 13883 8 Oral 0.67 protein_coding synonymous_variant LOW 588T>C Asp196Asp
M0130850 JKHBOPIA_00011 13904 6 Oral 0.50 protein_coding synonymous_variant LOW 609T>C Asp203Asp
M0130851 JKHBOPIA_00011 14015 9 Oral 0.75 protein_coding synonymous_variant LOW 720C>T Thr240Thr
M0130852 JKHBOPIA_00011 14189 9 Oral 0.75 protein_coding synonymous_variant LOW 894C>T Phe298Phe
M0130853 JKHBOPIA_00011 14192 9 Oral 0.75 protein_coding synonymous_variant LOW 897C>T Asp299Asp
M0130854 JKHBOPIA_00008 14389 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -3936T>C None
M0130855 JKHBOPIA_00012 14850 3 Oral 0.25 protein_coding synonymous_variant LOW 531A>G Gly177Gly
M0130856 JKHBOPIA_00012 15159 3 Oral 0.25 protein_coding synonymous_variant LOW 222T>G Gly74Gly
M0130857 JKHBOPIA_00012 15237 4 Oral 0.33 protein_coding synonymous_variant LOW 144C>T Tyr48Tyr
M0130858 JKHBOPIA_00012 15316 3 Oral 0.25 protein_coding missense_variant MODERATE 65G>A Ser22Asn
M0130859 JKHBOPIA_00012 15328 5 Oral 0.42 protein_coding missense_variant MODERATE 53G>T Gly18Val
M0130860 JKHBOPIA_00012 15334 5 Oral 0.42 protein_coding missense_variant MODERATE 47A>C Glu16Ala
M0130861 JKHBOPIA_00012 15339 5 Oral 0.42 protein_coding synonymous_variant LOW 42A>G Leu14Leu
M0130862 JKHBOPIA_00008 15444 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -4991G>C None
M0130863 JKHBOPIA_00008 15447 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -4994C>G None
M0130864 JKHBOPIA_00013 15532 3 Oral 0.25 protein_coding missense_variant MODERATE 336A>T Glu112Asp
M0130865 JKHBOPIA_00013 15568 4 Oral 0.33 protein_coding synonymous_variant LOW 300T>G Gly100Gly
M0130866 JKHBOPIA_00013 15588 5 Oral 0.42 protein_coding missense_variant MODERATE 280G>C Val94Leu
M0130867 JKHBOPIA_00013 15609 4 Oral 0.33 protein_coding synonymous_variant LOW 259C>T Leu87Leu
M0130868 JKHBOPIA_00006 7919 3 Oral 0.25 protein_coding synonymous_variant LOW 420C>T Ile140Ile
M0130869 JKHBOPIA_00006 8009 5 Oral 0.42 protein_coding synonymous_variant LOW 330C>T Gly110Gly
M0130870 JKHBOPIA_00004 8350 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2846G>A None
M0130871 JKHBOPIA_00004 8507 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -3003C>T None
M0130872 JKHBOPIA_00007 8887 5 Oral 0.42 protein_coding missense_variant MODERATE 271A>C Ile91Leu
M0130873 JKHBOPIA_00007 8888 5 Oral 0.42 protein_coding missense_variant MODERATE 272T>G Ile91Ser
M0130874 JKHBOPIA_00007 8910 5 Oral 0.42 protein_coding synonymous_variant LOW 294G>C Leu98Leu
M0130875 JKHBOPIA_00007 8919 4 Oral 0.33 protein_coding synonymous_variant LOW 303C>T Gly101Gly
M0130876 JKHBOPIA_00007 8970 4 Oral 0.33 protein_coding synonymous_variant LOW 354C>T Phe118Phe
M0130877 JKHBOPIA_00007 8971 4 Oral 0.33 protein_coding missense_variant MODERATE 355T>G Ser119Ala
M0130878 JKHBOPIA_00007 8973 4 Oral 0.33 protein_coding synonymous_variant LOW 357C>G Ser119Ser
M0130879 JKHBOPIA_00007 9144 3 Oral 0.25 protein_coding synonymous_variant LOW 528C>T Ile176Ile
M0130880 JKHBOPIA_00004 9288 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -3784G>C None
M0130881 JKHBOPIA_00004 9394 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3890C>T None
M0130882 JKHBOPIA_00005 11168 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -3730T>C None
M0130883 JKHBOPIA_00005 11172 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -3734C>A None
M0130884 JKHBOPIA_00005 11185 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -3747T>C None
M0130885 JKHBOPIA_00005 11192 6 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -3754T>C None
M0130886 JKHBOPIA_00005 11193 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -3755T>C None
M0130887 JKHBOPIA_00005 11200 6 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -3762T>A None
M0130888 JKHBOPIA_00005 11269 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -3831T>C None
M0130889 JKHBOPIA_00005 11276 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -3838C>A None
M0130890 JKHBOPIA_00010 11908 6 Oral 0.50 protein_coding synonymous_variant LOW 498C>T Thr166Thr
M0130891 JKHBOPIA_00010 11965 5 Oral 0.42 protein_coding synonymous_variant LOW 555A>G Ala185Ala
M0130892 JKHBOPIA_00008 10145 4 Oral 0.33 protein_coding missense_variant MODERATE 309C>A Asp103Glu
M0130893 JKHBOPIA_00009 10846 6 Oral 0.50 protein_coding synonymous_variant LOW 129G>C Ala43Ala
M0130894 JKHBOPIA_00009 10951 3 Oral 0.25 protein_coding synonymous_variant LOW 234T>C Ser78Ser
M0130895 JKHBOPIA_00009 11092 4 Oral 0.33 protein_coding synonymous_variant LOW 375A>G Leu125Leu
M0130896 JKHBOPIA_00005 11106 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -3668G>A None
M0130897 JKHBOPIA_00005 11108 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -3670A>G None
M0130898 JKHBOPIA_00005 11117 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3679T>C None
M0130899 JKHBOPIA_00005 11121 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -3683A>C None
M0130900 JKHBOPIA_00005 11126 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -3688G>A None
M0130901 JKHBOPIA_00005 11127 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -3689A>C None
M0130902 JKHBOPIA_00005 11128 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -3690C>T None
M0130903 JKHBOPIA_00010 11557 3 Oral 0.25 protein_coding synonymous_variant LOW 147C>T Ser49Ser
M0130904 JKHBOPIA_00010 11698 4 Oral 0.33 protein_coding synonymous_variant LOW 288C>T Pro96Pro
M0130905 JKHBOPIA_00010 12055 8 Oral 0.67 protein_coding synonymous_variant LOW 645T>C Gly215Gly
M0130906 JKHBOPIA_00010 12736 5 Oral 0.42 protein_coding synonymous_variant LOW 1326G>C Val442Val
M0130907 JKHBOPIA_00010 12980 4 Oral 0.33 protein_coding missense_variant MODERATE 1570G>C Ala524Pro
M0130908 JKHBOPIA_00010 12981 4 Oral 0.33 protein_coding missense_variant MODERATE 1571C>T Ala524Val
M0130909 JKHBOPIA_00011 14117 3 Oral 0.25 protein_coding synonymous_variant LOW 822G>C Pro274Pro
M0130910 JKHBOPIA_00013 15622 3 Oral 0.25 protein_coding synonymous_variant LOW 246C>T Ser82Ser
M0130911 JKHBOPIA_00010 12067 3 Oral 0.25 protein_coding synonymous_variant LOW 657T>C Ile219Ile
M0130912 JKHBOPIA_00010 12301 3 Oral 0.25 protein_coding synonymous_variant LOW 891T>C Asp297Asp
M0130913 JKHBOPIA_00010 12481 3 Oral 0.25 protein_coding synonymous_variant LOW 1071G>A Val357Val
M0130914 JKHBOPIA_00010 12541 5 Oral 0.42 protein_coding synonymous_variant LOW 1131C>T Gly377Gly
M0130915 JKHBOPIA_00008 14358 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -3905G>A None
M0130916 JKHBOPIA_00008 14360 6 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -3907C>T None
M0130917 JKHBOPIA_00004 4545 4 Oral 0.33 protein_coding synonymous_variant LOW 960T>C Ile320Ile
M0130918 JKHBOPIA_00004 4548 5 Oral 0.42 protein_coding synonymous_variant LOW 957T>C Asp319Asp
M0130919 JKHBOPIA_00004 4551 5 Oral 0.42 protein_coding synonymous_variant LOW 954A>G Ala318Ala
M0130920 JKHBOPIA_00004 4584 5 Oral 0.42 protein_coding synonymous_variant LOW 921T>C Gly307Gly
M0130921 JKHBOPIA_00004 4719 4 Oral 0.33 protein_coding synonymous_variant LOW 786C>A Arg262Arg
M0130922 JKHBOPIA_00004 4782 5 Oral 0.42 protein_coding synonymous_variant LOW 723T>C Phe241Phe
M0130923 JKHBOPIA_00004 4794 5 Oral 0.42 protein_coding synonymous_variant LOW 711T>C Ser237Ser
M0130924 JKHBOPIA_00004 4803 5 Oral 0.42 protein_coding synonymous_variant LOW 702C>T Thr234Thr
M0130925 JKHBOPIA_00004 4899 3 Oral 0.25 protein_coding synonymous_variant LOW 606C>T Ile202Ile
M0130926 JKHBOPIA_00004 4917 3 Oral 0.25 protein_coding synonymous_variant LOW 588C>G Val196Val
M0130927 JKHBOPIA_00004 4940 5 Oral 0.42 protein_coding missense_variant MODERATE 565G>A Val189Ile
M0130928 JKHBOPIA_00004 4964 4 Oral 0.33 protein_coding missense_variant MODERATE 541A>C Ile181Leu
M0130929 JKHBOPIA_00004 4966 3 Oral 0.25 protein_coding missense_variant MODERATE 539C>G Ala180Gly
M0130930 JKHBOPIA_00004 5019 4 Oral 0.33 protein_coding synonymous_variant LOW 486G>A Ala162Ala
M0130931 JKHBOPIA_00004 5022 4 Oral 0.33 protein_coding synonymous_variant LOW 483C>G Ala161Ala
M0130932 JKHBOPIA_00004 5034 5 Oral 0.42 protein_coding synonymous_variant LOW 471G>A Glu157Glu
M0130933 JKHBOPIA_00004 5152 4 Oral 0.33 protein_coding missense_variant MODERATE 353T>C Val118Ala
M0130934 JKHBOPIA_00004 5169 5 Oral 0.42 protein_coding synonymous_variant LOW 336C>A Ser112Ser
M0130935 JKHBOPIA_00004 5174 4 Oral 0.33 protein_coding missense_variant MODERATE 331G>A Ala111Thr
M0130936 JKHBOPIA_00004 5199 5 Oral 0.42 protein_coding synonymous_variant LOW 306G>A Ala102Ala
M0130937 JKHBOPIA_00004 5226 5 Oral 0.42 protein_coding synonymous_variant LOW 279T>C Asp93Asp
M0130938 JKHBOPIA_00004 5304 5 Oral 0.42 protein_coding synonymous_variant LOW 201T>C Gly67Gly
M0130939 JKHBOPIA_00005 6308 3 Oral 0.25 protein_coding synonymous_variant LOW 1131T>C Asn377Asn
M0130940 JKHBOPIA_00005 6320 3 Oral 0.25 protein_coding synonymous_variant LOW 1119T>C Gly373Gly
M0130941 JKHBOPIA_00005 6392 3 Oral 0.25 protein_coding synonymous_variant LOW 1047T>A Ala349Ala
M0130942 JKHBOPIA_00005 6406 3 Oral 0.25 protein_coding missense_variant MODERATE 1033A>G Asn345Asp
M0130943 JKHBOPIA_00005 6446 3 Oral 0.25 protein_coding synonymous_variant LOW 993A>G Lys331Lys
M0130944 JKHBOPIA_00005 6566 3 Oral 0.25 protein_coding synonymous_variant LOW 873T>C Val291Val
M0130945 JKHBOPIA_00005 6578 3 Oral 0.25 protein_coding synonymous_variant LOW 861G>C Leu287Leu
M0130946 JKHBOPIA_00005 6583 3 Oral 0.25 protein_coding missense_variant MODERATE 856A>G Ser286Gly
M0130947 JKHBOPIA_00005 6625 3 Oral 0.25 protein_coding missense_variant MODERATE 814G>T Ala272Ser
M0130948 JKHBOPIA_00005 6638 3 Oral 0.25 protein_coding missense_variant MODERATE 801T>G Asn267Lys
M0130949 JKHBOPIA_00005 6738 3 Oral 0.25 protein_coding missense_variant MODERATE 701G>C Gly234Ala
M0130950 JKHBOPIA_00005 6795 3 Oral 0.25 protein_coding missense_variant MODERATE 644A>G Asn215Ser
M0130951 JKHBOPIA_00005 6859 4 Oral 0.33 protein_coding missense_variant MODERATE 580A>G Ile194Val
M0130952 JKHBOPIA_00005 6860 4 Oral 0.33 protein_coding synonymous_variant LOW 579G>C Leu193Leu
M0130953 JKHBOPIA_00005 6887 3 Oral 0.25 protein_coding synonymous_variant LOW 552A>G Ala184Ala
M0130954 JKHBOPIA_00005 6902 3 Oral 0.25 protein_coding synonymous_variant LOW 537G>A Val179Val
M0130955 JKHBOPIA_00005 6938 4 Oral 0.33 protein_coding synonymous_variant LOW 501T>C Gly167Gly
M0130956 JKHBOPIA_00005 6958 4 Oral 0.33 protein_coding missense_variant MODERATE 481A>G Ile161Val
M0130957 JKHBOPIA_00005 6959 4 Oral 0.33 protein_coding synonymous_variant LOW 480A>C Ala160Ala
M0130958 JKHBOPIA_00005 6995 3 Oral 0.25 protein_coding synonymous_variant LOW 444C>G Leu148Leu
M0130959 JKHBOPIA_00005 7016 4 Oral 0.33 protein_coding synonymous_variant LOW 423T>C Asn141Asn
M0130960 JKHBOPIA_00005 7052 3 Oral 0.25 protein_coding synonymous_variant LOW 387A>C Ala129Ala
M0130961 JKHBOPIA_00005 7109 3 Oral 0.25 protein_coding synonymous_variant LOW 330T>C Asp110Asp
M0130962 JKHBOPIA_00005 7136 4 Oral 0.33 protein_coding missense_variant MODERATE 303G>C Arg101Ser
M0130963 JKHBOPIA_00005 7142 4 Oral 0.33 protein_coding synonymous_variant LOW 297T>C Thr99Thr
M0130964 JKHBOPIA_00005 7175 3 Oral 0.25 protein_coding synonymous_variant LOW 264A>C Arg88Arg
M0130965 JKHBOPIA_00005 7232 4 Oral 0.33 protein_coding synonymous_variant LOW 207C>T Gly69Gly
M0130966 JKHBOPIA_00005 7409 4 Oral 0.33 protein_coding synonymous_variant LOW 30C>T Asn10Asn
M0130967 JKHBOPIA_00005 7419 4 Oral 0.33 protein_coding missense_variant MODERATE 20T>C Ile7Thr
M0130968 JKHBOPIA_00004 7523 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2019C>T None
M0130969 JKHBOPIA_00004 7529 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2025G>A None
M0130970 JKHBOPIA_00004 7541 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -2037C>T None
M0130971 JKHBOPIA_00004 7555 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -2051G>C None
M0130972 JKHBOPIA_00004 7583 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -2079T>C None
M0130973 JKHBOPIA_00004 7584 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2080A>G None
M0130974 JKHBOPIA_00004 7590 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2086A>G None
M0130975 JKHBOPIA_00004 7624 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -2120C>T None
M0130976 JKHBOPIA_00004 7635 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2131A>T None
M0130977 JKHBOPIA_00004 7724 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -2220T>C None
M0130978 JKHBOPIA_00004 7794 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -2290C>A None
M0130979 JKHBOPIA_00007 8772 4 Oral 0.33 protein_coding synonymous_variant LOW 156C>T Gly52Gly
M0130980 JKHBOPIA_00007 8865 3 Oral 0.25 protein_coding synonymous_variant LOW 249C>G Ala83Ala
M0130981 JKHBOPIA_00007 9003 3 Oral 0.25 protein_coding synonymous_variant LOW 387G>T Ala129Ala
M0130982 JKHBOPIA_00007 9099 4 Oral 0.33 protein_coding synonymous_variant LOW 483G>A Ala161Ala
M0130983 JKHBOPIA_00008 10237 3 Oral 0.25 protein_coding synonymous_variant LOW 217C>T Leu73Leu
M0130984 JKHBOPIA_00009 11086 3 Oral 0.25 protein_coding synonymous_variant LOW 369T>C Asp123Asp
M0130985 JKHBOPIA_00010 11662 3 Oral 0.25 protein_coding synonymous_variant LOW 252C>T Ile84Ile
M0130986 JKHBOPIA_00004 4374 3 Oral 0.25 protein_coding missense_variant MODERATE 1131A>C Glu377Asp
M0130987 JKHBOPIA_00004 4388 3 Oral 0.25 protein_coding missense_variant MODERATE 1117A>G Ile373Val
M0130988 JKHBOPIA_00004 4391 3 Oral 0.25 protein_coding missense_variant MODERATE 1114G>A Ala372Thr
M0130989 JKHBOPIA_00004 4419 3 Oral 0.25 protein_coding synonymous_variant LOW 1086C>T Arg362Arg
M0130990 JKHBOPIA_00004 4443 4 Oral 0.33 protein_coding synonymous_variant LOW 1062A>G Glu354Glu
M0130991 JKHBOPIA_00004 4472 4 Oral 0.33 protein_coding missense_variant MODERATE 1033A>T Ile345Phe
M0130992 JKHBOPIA_00004 4476 4 Oral 0.33 protein_coding synonymous_variant LOW 1029T>C Asn343Asn
M0130993 JKHBOPIA_00004 4518 4 Oral 0.33 protein_coding synonymous_variant LOW 987A>G Ala329Ala
M0130994 JKHBOPIA_00004 4554 3 Oral 0.25 protein_coding synonymous_variant LOW 951C>T Asp317Asp
M0130995 JKHBOPIA_00004 4779 3 Oral 0.25 protein_coding synonymous_variant LOW 726C>G Ala242Ala
M0130996 JKHBOPIA_00004 8445 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -2941C>T None
M0130997 JKHBOPIA_00004 8457 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -2953T>A None
M0130998 JKHBOPIA_00007 8835 4 Oral 0.33 protein_coding synonymous_variant LOW 219T>G Pro73Pro
M0130999 JKHBOPIA_00007 9036 3 Oral 0.25 protein_coding synonymous_variant LOW 420C>T Gly140Gly
M0131000 JKHBOPIA_00004 9280 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3776G>A None
M0131001 JKHBOPIA_00006 13032 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -4694G>A None
M0131002 JKHBOPIA_00006 13105 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -4767A>G None
M0131003 JKHBOPIA_00006 13111 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -4773T>C None
M0131004 JKHBOPIA_00006 13112 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -4774T>C None
M0131005 JKHBOPIA_00010 12784 3 Oral 0.25 protein_coding synonymous_variant LOW 1374C>T Gly458Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term