Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2703
  Reference Plasmid   1111525849861015_bin.5__k141_271916
  Reference Plasmid Size   14273
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0053102 KKEODCAF_00003 2887 3 Skin 0.33 protein_coding missense_variant MODERATE 1297G>A Val433Ile
M0053103 KKEODCAF_00003 3083 4 Skin 0.44 protein_coding synonymous_variant LOW 1101G>A Thr367Thr
M0053104 KKEODCAF_00003 3829 3 Skin 0.33 protein_coding missense_variant MODERATE 355A>T Thr119Ser
M0053105 KKEODCAF_00004 4264 6 Skin 0.67 protein_coding synonymous_variant LOW 468T>C Ile156Ile
M0053106 KKEODCAF_00004 4672 3 Skin 0.33 protein_coding synonymous_variant LOW 60G>A Gln20Gln
M0053107 KKEODCAF_00005 4809 6 Skin 0.67 protein_coding synonymous_variant LOW 724C>T Leu242Leu
M0053108 KKEODCAF_00005 4837 5 Skin 0.56 protein_coding synonymous_variant LOW 696C>A Ala232Ala
M0053109 KKEODCAF_00005 5206 6 Skin 0.67 protein_coding missense_variant MODERATE 327C>A His109Gln
M0053110 KKEODCAF_00005 5449 6 Skin 0.67 protein_coding synonymous_variant LOW 84A>G Pro28Pro
M0053111 KKEODCAF_00006 5635 4 Skin 0.44 protein_coding synonymous_variant LOW 441C>G Gly147Gly
M0053112 KKEODCAF_00006 5839 4 Skin 0.44 protein_coding synonymous_variant LOW 237G>A Ala79Ala
M0053113 KKEODCAF_00006 5897 5 Skin 0.56 protein_coding missense_variant MODERATE 179A>G Asn60Ser
M0053114 KKEODCAF_00007 7412 4 Skin 0.44 protein_coding synonymous_variant LOW 219T>C Arg73Arg
M0053115 KKEODCAF_00007 7460 5 Skin 0.56 protein_coding synonymous_variant LOW 171C>T Asn57Asn
M0053116 KKEODCAF_00008 7728 5 Skin 0.56 protein_coding missense_variant MODERATE 515T>C Val172Ala
M0053117 KKEODCAF_00008 7799 3 Skin 0.33 protein_coding synonymous_variant LOW 444T>G Val148Val
M0053118 KKEODCAF_00008 7868 3 Skin 0.33 protein_coding synonymous_variant LOW 375C>G Arg125Arg
M0053119 KKEODCAF_00008 8110 3 Skin 0.33 protein_coding synonymous_variant LOW 133T>C Leu45Leu
M0053120 KKEODCAF_00008 8186 3 Skin 0.33 protein_coding synonymous_variant LOW 57C>T His19His
M0053121 KKEODCAF_00003 8288 5 Skin 0.56 protein_coding upstream_gene_variant MODIFIER -4105A>G None
M0053122 KKEODCAF_00009 8401 3 Skin 0.33 protein_coding synonymous_variant LOW 954A>G Ser318Ser
M0053123 KKEODCAF_00009 8655 4 Skin 0.44 protein_coding missense_variant MODERATE 700G>C Ala234Pro
M0053124 KKEODCAF_00009 8656 4 Skin 0.44 protein_coding synonymous_variant LOW 699A>C Val233Val
M0053125 KKEODCAF_00009 8842 5 Skin 0.56 protein_coding missense_variant MODERATE 513C>A Asp171Glu
M0053126 KKEODCAF_00009 8980 3 Skin 0.33 protein_coding synonymous_variant LOW 375C>T Leu125Leu
M0053127 KKEODCAF_00009 9013 3 Skin 0.33 protein_coding synonymous_variant LOW 342A>T Val114Val
M0053128 KKEODCAF_00009 9065 3 Skin 0.33 protein_coding missense_variant MODERATE 290A>C Glu97Ala
M0053129 KKEODCAF_00009 9166 3 Skin 0.33 protein_coding synonymous_variant LOW 189G>A Thr63Thr
M0053130 KKEODCAF_00009 9202 3 Skin 0.33 protein_coding synonymous_variant LOW 153T>A Arg51Arg
M0053131 KKEODCAF_00010 9704 3 Skin 0.33 protein_coding synonymous_variant LOW 474G>A Ala158Ala
M0053132 KKEODCAF_00010 9725 3 Skin 0.33 protein_coding synonymous_variant LOW 453T>G Ala151Ala
M0053133 KKEODCAF_00010 9847 3 Skin 0.33 protein_coding missense_variant MODERATE 331T>G Ser111Ala
M0053134 KKEODCAF_00010 9904 3 Skin 0.33 protein_coding missense_variant MODERATE 274A>G Ile92Val
M0053135 KKEODCAF_00010 9950 3 Skin 0.33 protein_coding missense_variant MODERATE 228G>C Met76Ile
M0053136 KKEODCAF_00010 9971 3 Skin 0.33 protein_coding synonymous_variant LOW 207T>C Pro69Pro
M0053137 KKEODCAF_00010 9983 3 Skin 0.33 protein_coding synonymous_variant LOW 195T>C Arg65Arg
M0053138 KKEODCAF_00010 10124 3 Skin 0.33 protein_coding synonymous_variant LOW 54A>G Ala18Ala
M0053139 KKEODCAF_00010 10145 3 Skin 0.33 protein_coding missense_variant MODERATE 33T>G Phe11Leu
M0053140 KKEODCAF_00010 10147 3 Skin 0.33 protein_coding missense_variant MODERATE 31T>G Phe11Val
M0053141 KKEODCAF_00011 11233 3 Skin 0.33 protein_coding missense_variant MODERATE 767G>A Arg256Gln
M0053142 KKEODCAF_00011 11282 4 Skin 0.44 protein_coding synonymous_variant LOW 816G>C Arg272Arg
M0053143 KKEODCAF_00011 11828 3 Skin 0.33 protein_coding synonymous_variant LOW 1362T>C Val454Val
M0053144 KKEODCAF_00011 11846 4 Skin 0.44 protein_coding synonymous_variant LOW 1380G>C Ala460Ala
M0053145 KKEODCAF_00011 11861 3 Skin 0.33 protein_coding synonymous_variant LOW 1395C>A Val465Val
M0053146 KKEODCAF_00011 12181 3 Skin 0.33 protein_coding missense_variant MODERATE 1715G>C Ser572Thr
M0053147 KKEODCAF_00007 12427 4 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -4797A>C None
M0053148 KKEODCAF_00012 12677 3 Skin 0.33 protein_coding synonymous_variant LOW 165T>C His55His
M0053149 KKEODCAF_00008 13159 4 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -4917C>G None
M0053150 KKEODCAF_00008 13222 4 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -4980G>A None
M0053151 KKEODCAF_00009 13306 4 Skin 0.44 protein_coding upstream_gene_variant MODIFIER -3952G>C None
M0053152 KKEODCAF_00013 13355 4 Skin 0.44 protein_coding missense_variant MODERATE 39G>T Trp13Cys
M0053153 KKEODCAF_00013 13914 3 Skin 0.33 protein_coding missense_variant MODERATE 598G>C Gly200Arg
M0053154 KKEODCAF_00013 13934 3 Skin 0.33 protein_coding synonymous_variant LOW 618C>G Pro206Pro
M0053155 KKEODCAF_00003 3500 4 Skin 0.44 protein_coding synonymous_variant LOW 684C>T Ser228Ser
M0053156 KKEODCAF_00003 3515 4 Skin 0.44 protein_coding synonymous_variant LOW 669G>A Ala223Ala
M0053157 KKEODCAF_00004 4270 3 Skin 0.33 protein_coding synonymous_variant LOW 462T>C Gly154Gly
M0053158 KKEODCAF_00005 4801 4 Skin 0.44 protein_coding synonymous_variant LOW 732G>C Ser244Ser
M0053159 KKEODCAF_00005 4831 4 Skin 0.44 protein_coding synonymous_variant LOW 702A>C Gly234Gly
M0053160 KKEODCAF_00005 5190 4 Skin 0.44 protein_coding missense_variant MODERATE 343A>G Thr115Ala
M0053161 KKEODCAF_00009 8533 3 Skin 0.33 protein_coding synonymous_variant LOW 822T>A Arg274Arg
M0053162 KKEODCAF_00004 4348 3 Skin 0.33 protein_coding synonymous_variant LOW 384T>A Arg128Arg
M0053163 KKEODCAF_00005 5227 3 Skin 0.33 protein_coding synonymous_variant LOW 306T>C Gly102Gly
M0053164 KKEODCAF_00005 5241 3 Skin 0.33 protein_coding missense_variant MODERATE 292G>C Gly98Arg
M0053165 KKEODCAF_00005 5248 3 Skin 0.33 protein_coding synonymous_variant LOW 285T>G Gly95Gly
M0053166 KKEODCAF_00005 5254 3 Skin 0.33 protein_coding synonymous_variant LOW 279T>C Val93Val
M0053167 KKEODCAF_00009 14080 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4726A>G None
M0053168 KKEODCAF_00002 5536 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3236A>C None
M0053169 KKEODCAF_00002 5538 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3238A>G None
M0053170 KKEODCAF_00002 5543 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3243A>T None
M0053171 KKEODCAF_00002 5544 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -3244C>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term