Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2741
  Reference Plasmid   1111525849861839_bin.8__k141_19624
  Reference Plasmid Size   14537
  Reference Plasmid GC Content   0.56
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0054053 FAJGKIKC_00010 7304 4 Skin 0.67 protein_coding synonymous_variant LOW 780A>G Leu260Leu
M0054054 FAJGKIKC_00010 7625 4 Skin 0.67 protein_coding synonymous_variant LOW 459G>A Val153Val
M0054055 FAJGKIKC_00010 7835 4 Skin 0.67 protein_coding synonymous_variant LOW 249T>C Gly83Gly
M0054056 FAJGKIKC_00010 7925 3 Skin 0.50 protein_coding synonymous_variant LOW 159T>C Val53Val
M0054057 FAJGKIKC_00010 7979 4 Skin 0.67 protein_coding synonymous_variant LOW 105C>A Arg35Arg
M0054058 FAJGKIKC_00010 8036 4 Skin 0.67 protein_coding synonymous_variant LOW 48G>A Glu16Glu
M0054059 FAJGKIKC_00011 8549 4 Skin 0.67 protein_coding missense_variant MODERATE 350C>T Ala117Val
M0054060 FAJGKIKC_00011 8573 4 Skin 0.67 protein_coding missense_variant MODERATE 374G>C Ser125Thr
M0054061 FAJGKIKC_00011 8601 3 Skin 0.50 protein_coding synonymous_variant LOW 402T>C Asp134Asp
M0054062 FAJGKIKC_00002 2146 4 Skin 0.67 protein_coding synonymous_variant LOW 87A>T Val29Val
M0054063 FAJGKIKC_00004 3064 4 Skin 0.67 protein_coding synonymous_variant LOW 213T>C Ile71Ile
M0054064 FAJGKIKC_00004 3619 4 Skin 0.67 protein_coding synonymous_variant LOW 768G>A Lys256Lys
M0054065 FAJGKIKC_00004 3622 4 Skin 0.67 protein_coding synonymous_variant LOW 771G>A Val257Val
M0054066 FAJGKIKC_00004 3664 4 Skin 0.67 protein_coding synonymous_variant LOW 813C>T Ile271Ile
M0054067 FAJGKIKC_00008 5826 4 Skin 0.67 protein_coding missense_variant MODERATE 285A>T Glu95Asp
M0054068 FAJGKIKC_00008 6027 4 Skin 0.67 protein_coding synonymous_variant LOW 84A>G Gln28Gln
M0054069 FAJGKIKC_00009 6284 4 Skin 0.67 protein_coding synonymous_variant LOW 831T>G Leu277Leu
M0054070 FAJGKIKC_00009 6299 4 Skin 0.67 protein_coding synonymous_variant LOW 816C>T Thr272Thr
M0054071 FAJGKIKC_00009 6311 4 Skin 0.67 protein_coding synonymous_variant LOW 804T>C Gly268Gly
M0054072 FAJGKIKC_00001 238 3 Skin 0.50 protein_coding missense_variant MODERATE 187A>G Thr63Ala
M0054073 FAJGKIKC_00001 331 3 Skin 0.50 protein_coding missense_variant MODERATE 280A>G Thr94Ala
M0054074 FAJGKIKC_00001 337 3 Skin 0.50 protein_coding missense_variant MODERATE 286G>A Val96Ile
M0054075 FAJGKIKC_00001 415 3 Skin 0.50 protein_coding missense_variant MODERATE 364G>A Val122Ile
M0054076 FAJGKIKC_00002 931 3 Skin 0.50 protein_coding synonymous_variant LOW 1302A>G Pro434Pro
M0054077 FAJGKIKC_00002 937 3 Skin 0.50 protein_coding synonymous_variant LOW 1296G>T Val432Val
M0054078 FAJGKIKC_00002 1120 3 Skin 0.50 protein_coding synonymous_variant LOW 1113A>G Val371Val
M0054079 FAJGKIKC_00002 1126 3 Skin 0.50 protein_coding synonymous_variant LOW 1107T>C Ser369Ser
M0054080 FAJGKIKC_00002 1471 3 Skin 0.50 protein_coding synonymous_variant LOW 762G>C Gly254Gly
M0054081 FAJGKIKC_00002 1720 3 Skin 0.50 protein_coding synonymous_variant LOW 513T>G Pro171Pro
M0054082 FAJGKIKC_00002 1729 3 Skin 0.50 protein_coding synonymous_variant LOW 504C>T Ile168Ile
M0054083 FAJGKIKC_00002 1738 3 Skin 0.50 protein_coding synonymous_variant LOW 495T>C Asn165Asn
M0054084 FAJGKIKC_00002 1777 3 Skin 0.50 protein_coding synonymous_variant LOW 456T>C Ile152Ile
M0054085 FAJGKIKC_00002 1783 3 Skin 0.50 protein_coding synonymous_variant LOW 450T>C Thr150Thr
M0054086 FAJGKIKC_00002 1945 3 Skin 0.50 protein_coding synonymous_variant LOW 288A>G Ser96Ser
M0054087 FAJGKIKC_00002 1954 3 Skin 0.50 protein_coding synonymous_variant LOW 279T>C Phe93Phe
M0054088 FAJGKIKC_00002 1963 3 Skin 0.50 protein_coding synonymous_variant LOW 270G>T Val90Val
M0054089 FAJGKIKC_00009 6389 3 Skin 0.50 protein_coding synonymous_variant LOW 726G>A Gln242Gln
M0054090 FAJGKIKC_00009 6391 3 Skin 0.50 protein_coding missense_variant MODERATE 724C>A Gln242Lys
M0054091 FAJGKIKC_00009 6395 3 Skin 0.50 protein_coding synonymous_variant LOW 720C>T Ala240Ala
M0054092 FAJGKIKC_00009 6431 3 Skin 0.50 protein_coding synonymous_variant LOW 684T>C Gly228Gly
M0054093 FAJGKIKC_00009 6671 3 Skin 0.50 protein_coding synonymous_variant LOW 444T>C Asn148Asn
M0054094 FAJGKIKC_00009 6746 3 Skin 0.50 protein_coding synonymous_variant LOW 369C>G Ala123Ala
M0054095 FAJGKIKC_00009 6791 3 Skin 0.50 protein_coding synonymous_variant LOW 324A>G Leu108Leu
M0054096 FAJGKIKC_00009 6836 3 Skin 0.50 protein_coding synonymous_variant LOW 279C>T Thr93Thr
M0054097 FAJGKIKC_00009 6857 3 Skin 0.50 protein_coding synonymous_variant LOW 258A>G Val86Val
M0054098 FAJGKIKC_00009 6899 3 Skin 0.50 protein_coding synonymous_variant LOW 216G>C Ala72Ala
M0054099 FAJGKIKC_00009 6902 3 Skin 0.50 protein_coding synonymous_variant LOW 213C>T Asp71Asp
M0054100 FAJGKIKC_00009 7004 3 Skin 0.50 protein_coding synonymous_variant LOW 111T>C Pro37Pro
M0054101 FAJGKIKC_00002 7174 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4942A>G None
M0054102 FAJGKIKC_00002 7176 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4944A>G None
M0054103 FAJGKIKC_00010 7507 3 Skin 0.50 protein_coding synonymous_variant LOW 577C>T Leu193Leu
M0054104 FAJGKIKC_00011 8670 3 Skin 0.50 protein_coding synonymous_variant LOW 471T>C Ala157Ala
M0054105 FAJGKIKC_00012 8858 3 Skin 0.50 protein_coding synonymous_variant LOW 369T>C Ala123Ala
M0054106 FAJGKIKC_00012 8867 3 Skin 0.50 protein_coding synonymous_variant LOW 360A>G Thr120Thr
M0054107 FAJGKIKC_00012 8978 3 Skin 0.50 protein_coding missense_variant MODERATE 249G>T Glu83Asp
M0054108 FAJGKIKC_00012 9158 3 Skin 0.50 protein_coding synonymous_variant LOW 69A>C Ala23Ala
M0054109 FAJGKIKC_00012 9179 3 Skin 0.50 protein_coding synonymous_variant LOW 48A>C Ala16Ala
M0054110 FAJGKIKC_00012 9194 3 Skin 0.50 protein_coding synonymous_variant LOW 33C>T Phe11Phe
M0054111 FAJGKIKC_00013 9253 3 Skin 0.50 protein_coding missense_variant MODERATE 603T>A His201Gln
M0054112 FAJGKIKC_00013 9484 3 Skin 0.50 protein_coding synonymous_variant LOW 372T>C Ala124Ala
M0054113 FAJGKIKC_00013 9493 3 Skin 0.50 protein_coding synonymous_variant LOW 363G>A Lys121Lys
M0054114 FAJGKIKC_00013 9612 3 Skin 0.50 protein_coding missense_variant MODERATE 244G>A Ala82Thr
M0054115 FAJGKIKC_00013 9724 3 Skin 0.50 protein_coding synonymous_variant LOW 132A>G Glu44Glu
M0054116 FAJGKIKC_00014 9936 3 Skin 0.50 protein_coding synonymous_variant LOW 54A>G Pro18Pro
M0054117 FAJGKIKC_00014 9973 3 Skin 0.50 protein_coding missense_variant MODERATE 91A>G Thr31Ala
M0054118 FAJGKIKC_00014 10251 3 Skin 0.50 protein_coding synonymous_variant LOW 369C>G Thr123Thr
M0054119 FAJGKIKC_00014 10393 3 Skin 0.50 protein_coding synonymous_variant LOW 511T>C Leu171Leu
M0054120 FAJGKIKC_00014 10591 3 Skin 0.50 protein_coding missense_variant MODERATE 709A>C Asn237His
M0054121 FAJGKIKC_00014 10647 3 Skin 0.50 protein_coding synonymous_variant LOW 765A>G Arg255Arg
M0054122 FAJGKIKC_00014 10687 3 Skin 0.50 protein_coding synonymous_variant LOW 805T>C Leu269Leu
M0054123 FAJGKIKC_00014 10695 3 Skin 0.50 protein_coding synonymous_variant LOW 813T>C Gly271Gly
M0054124 FAJGKIKC_00014 10704 3 Skin 0.50 protein_coding synonymous_variant LOW 822T>C Cys274Cys
M0054125 FAJGKIKC_00014 10862 3 Skin 0.50 protein_coding missense_variant MODERATE 980T>C Val327Ala
M0054126 FAJGKIKC_00015 10999 3 Skin 0.50 protein_coding missense_variant MODERATE 1358A>C Glu453Ala
M0054127 FAJGKIKC_00015 11028 3 Skin 0.50 protein_coding synonymous_variant LOW 1329T>C Asn443Asn
M0054128 FAJGKIKC_00015 11058 3 Skin 0.50 protein_coding synonymous_variant LOW 1299T>G Pro433Pro
M0054129 FAJGKIKC_00015 11169 3 Skin 0.50 protein_coding synonymous_variant LOW 1188T>C Val396Val
M0054130 FAJGKIKC_00015 11172 3 Skin 0.50 protein_coding synonymous_variant LOW 1185T>C Gly395Gly
M0054131 FAJGKIKC_00015 11268 3 Skin 0.50 protein_coding synonymous_variant LOW 1089T>A Leu363Leu
M0054132 FAJGKIKC_00015 11556 3 Skin 0.50 protein_coding synonymous_variant LOW 801T>C Arg267Arg
M0054133 FAJGKIKC_00015 11568 3 Skin 0.50 protein_coding synonymous_variant LOW 789G>A Leu263Leu
M0054134 FAJGKIKC_00015 11598 3 Skin 0.50 protein_coding synonymous_variant LOW 759T>C Ile253Ile
M0054135 FAJGKIKC_00015 11619 3 Skin 0.50 protein_coding synonymous_variant LOW 738T>C Gly246Gly
M0054136 FAJGKIKC_00015 11760 3 Skin 0.50 protein_coding synonymous_variant LOW 597A>G Gln199Gln
M0054137 FAJGKIKC_00015 11772 3 Skin 0.50 protein_coding synonymous_variant LOW 585C>T Arg195Arg
M0054138 FAJGKIKC_00015 11805 3 Skin 0.50 protein_coding synonymous_variant LOW 552T>C Val184Val
M0054139 FAJGKIKC_00015 11889 3 Skin 0.50 protein_coding synonymous_variant LOW 468A>G Leu156Leu
M0054140 FAJGKIKC_00015 12024 3 Skin 0.50 protein_coding synonymous_variant LOW 333G>A Leu111Leu
M0054141 FAJGKIKC_00015 12042 3 Skin 0.50 protein_coding synonymous_variant LOW 315A>G Leu105Leu
M0054142 FAJGKIKC_00015 12054 3 Skin 0.50 protein_coding synonymous_variant LOW 303T>C Asn101Asn
M0054143 FAJGKIKC_00015 12123 3 Skin 0.50 protein_coding synonymous_variant LOW 234C>T Arg78Arg
M0054144 FAJGKIKC_00015 12132 3 Skin 0.50 protein_coding synonymous_variant LOW 225T>G Leu75Leu
M0054145 FAJGKIKC_00015 12204 3 Skin 0.50 protein_coding synonymous_variant LOW 153T>C Leu51Leu
M0054146 FAJGKIKC_00015 12282 3 Skin 0.50 protein_coding synonymous_variant LOW 75A>G Leu25Leu
M0054147 FAJGKIKC_00010 12424 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4341C>T None
M0054148 FAJGKIKC_00010 12433 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4350C>T None
M0054149 FAJGKIKC_00016 12447 3 Skin 0.50 protein_coding missense_variant MODERATE 11T>A Leu4Gln
M0054150 FAJGKIKC_00016 12785 3 Skin 0.50 protein_coding missense_variant MODERATE 349T>G Ser117Ala
M0054151 FAJGKIKC_00016 12901 3 Skin 0.50 protein_coding synonymous_variant LOW 465T>C Arg155Arg
M0054152 FAJGKIKC_00016 12985 3 Skin 0.50 protein_coding synonymous_variant LOW 549A>G Pro183Pro
M0054153 FAJGKIKC_00012 13144 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3918T>C None
M0054154 FAJGKIKC_00012 13214 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -3988A>G None
M0054155 FAJGKIKC_00017 13643 3 Skin 0.50 protein_coding missense_variant MODERATE 35T>A Val12Asp
M0054156 FAJGKIKC_00012 13864 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4638G>T None
M0054157 FAJGKIKC_00012 13898 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4672T>C None
M0054158 FAJGKIKC_00019 14419 3 Skin 0.50 protein_coding missense_variant MODERATE 77T>A Val26Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
FAJGKIKC_00009 2.A.7.3.12 84.6 4.9e-133 1 298 0.9933 0.9707 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.7 The Drug/Metabolite Transporter (DMT) Superfamily