Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C22
  Reference Plasmid   1111525849861985_bin.70__k141_409455
  Reference Plasmid Size   11636
  Reference Plasmid GC Content   0.37
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0054403 FDHCBEBC_00006 3453 3 Skin 0.33 protein_coding synonymous_variant LOW 177C>T Ser59Ser
M0054404 FDHCBEBC_00006 3520 3 Skin 0.33 protein_coding synonymous_variant LOW 244T>C Leu82Leu
M0054405 FDHCBEBC_00006 3531 3 Skin 0.33 protein_coding synonymous_variant LOW 255C>T Gly85Gly
M0054406 FDHCBEBC_00006 3639 3 Skin 0.33 protein_coding synonymous_variant LOW 363T>A Ala121Ala
M0054407 FDHCBEBC_00006 3735 3 Skin 0.33 protein_coding synonymous_variant LOW 459C>A Thr153Thr
M0054408 FDHCBEBC_00006 3975 3 Skin 0.33 protein_coding synonymous_variant LOW 699A>C Gly233Gly
M0054409 FDHCBEBC_00006 4056 3 Skin 0.33 protein_coding synonymous_variant LOW 780C>T Asn260Asn
M0054410 FDHCBEBC_00008 5619 3 Skin 0.33 protein_coding synonymous_variant LOW 183C>T Pro61Pro
M0054411 FDHCBEBC_00008 5916 3 Skin 0.33 protein_coding synonymous_variant LOW 480T>C Phe160Phe
M0054412 FDHCBEBC_00008 5970 3 Skin 0.33 protein_coding synonymous_variant LOW 534A>G Leu178Leu
M0054413 FDHCBEBC_00008 6156 3 Skin 0.33 protein_coding synonymous_variant LOW 720A>G Gly240Gly
M0054414 FDHCBEBC_00008 6201 3 Skin 0.33 protein_coding synonymous_variant LOW 765A>G Ala255Ala
M0054415 FDHCBEBC_00008 6237 3 Skin 0.33 protein_coding synonymous_variant LOW 801A>G Leu267Leu
M0054416 FDHCBEBC_00008 6279 3 Skin 0.33 protein_coding synonymous_variant LOW 843T>C Ile281Ile
M0054417 FDHCBEBC_00009 6401 3 Skin 0.33 protein_coding synonymous_variant LOW 57T>C Gly19Gly
M0054418 FDHCBEBC_00009 6648 3 Skin 0.33 protein_coding missense_variant MODERATE 304T>C Ser102Pro
M0054419 FDHCBEBC_00010 6760 3 Skin 0.33 protein_coding missense_variant MODERATE 106A>C Ile36Leu
M0054420 FDHCBEBC_00010 6999 3 Skin 0.33 protein_coding synonymous_variant LOW 345G>A Glu115Glu
M0054421 FDHCBEBC_00010 7041 3 Skin 0.33 protein_coding synonymous_variant LOW 387A>G Arg129Arg
M0054422 FDHCBEBC_00010 7077 3 Skin 0.33 protein_coding synonymous_variant LOW 423C>T Asn141Asn
M0054423 FDHCBEBC_00010 7134 3 Skin 0.33 protein_coding synonymous_variant LOW 480T>C Ala160Ala
M0054424 FDHCBEBC_00010 7221 3 Skin 0.33 protein_coding missense_variant MODERATE 567C>G Asp189Glu
M0054425 FDHCBEBC_00010 7497 3 Skin 0.33 protein_coding synonymous_variant LOW 843G>A Ala281Ala
M0133129 FDHCBEBC_00004 2517 5 Oral 0.50 protein_coding synonymous_variant LOW 15T>C Asn5Asn
M0133130 FDHCBEBC_00004 2644 4 Oral 0.40 protein_coding missense_variant MODERATE 142G>T Val48Phe
M0133131 FDHCBEBC_00004 2705 5 Oral 0.50 protein_coding missense_variant MODERATE 203C>T Ala68Val
M0133132 FDHCBEBC_00004 2787 5 Oral 0.50 protein_coding synonymous_variant LOW 285C>A Ala95Ala
M0133133 FDHCBEBC_00005 2866 4 Oral 0.40 protein_coding synonymous_variant LOW 75C>T Leu25Leu
M0133134 FDHCBEBC_00005 2977 5 Oral 0.50 protein_coding synonymous_variant LOW 186A>G Thr62Thr
M0133135 FDHCBEBC_00005 3034 5 Oral 0.50 protein_coding synonymous_variant LOW 243C>T Ala81Ala
M0133136 FDHCBEBC_00005 3088 4 Oral 0.40 protein_coding synonymous_variant LOW 297A>G Leu99Leu
M0133137 FDHCBEBC_00005 3133 5 Oral 0.50 protein_coding synonymous_variant LOW 342T>C Asp114Asp
M0133138 FDHCBEBC_00005 3164 5 Oral 0.50 protein_coding missense_variant MODERATE 373A>G Lys125Glu
M0133139 FDHCBEBC_00005 3226 4 Oral 0.40 protein_coding synonymous_variant LOW 435T>C Ser145Ser
M0133140 FDHCBEBC_00005 3249 5 Oral 0.50 protein_coding missense_variant MODERATE 458A>G Glu153Gly
M0133141 FDHCBEBC_00006 3383 3 Oral 0.30 protein_coding missense_variant MODERATE 107C>G Thr36Ser
M0133142 FDHCBEBC_00006 3453 4 Oral 0.40 protein_coding synonymous_variant LOW 177C>T Ser59Ser
M0133143 FDHCBEBC_00006 3520 4 Oral 0.40 protein_coding synonymous_variant LOW 244T>C Leu82Leu
M0133144 FDHCBEBC_00006 3531 5 Oral 0.50 protein_coding synonymous_variant LOW 255C>T Gly85Gly
M0133145 FDHCBEBC_00006 3612 4 Oral 0.40 protein_coding synonymous_variant LOW 336A>G Lys112Lys
M0133146 FDHCBEBC_00006 3639 5 Oral 0.50 protein_coding synonymous_variant LOW 363T>A Ala121Ala
M0133147 FDHCBEBC_00006 3711 3 Oral 0.30 protein_coding synonymous_variant LOW 435C>T Ile145Ile
M0133148 FDHCBEBC_00006 3735 5 Oral 0.50 protein_coding synonymous_variant LOW 459C>A Thr153Thr
M0133149 FDHCBEBC_00006 3747 4 Oral 0.40 protein_coding synonymous_variant LOW 471A>G Val157Val
M0133150 FDHCBEBC_00006 3777 4 Oral 0.40 protein_coding synonymous_variant LOW 501A>T Ser167Ser
M0133151 FDHCBEBC_00006 3786 4 Oral 0.40 protein_coding synonymous_variant LOW 510C>A Val170Val
M0133152 FDHCBEBC_00006 3807 3 Oral 0.30 protein_coding synonymous_variant LOW 531A>G Leu177Leu
M0133153 FDHCBEBC_00006 3810 3 Oral 0.30 protein_coding synonymous_variant LOW 534T>C Ala178Ala
M0133154 FDHCBEBC_00006 3813 4 Oral 0.40 protein_coding synonymous_variant LOW 537G>A Glu179Glu
M0133155 FDHCBEBC_00006 3822 4 Oral 0.40 protein_coding synonymous_variant LOW 546A>C Gly182Gly
M0133156 FDHCBEBC_00006 3824 4 Oral 0.40 protein_coding missense_variant MODERATE 548G>A Arg183Lys
M0133157 FDHCBEBC_00006 3834 4 Oral 0.40 protein_coding synonymous_variant LOW 558G>A Leu186Leu
M0133158 FDHCBEBC_00006 3954 4 Oral 0.40 protein_coding synonymous_variant LOW 678T>C Phe226Phe
M0133159 FDHCBEBC_00006 3975 5 Oral 0.50 protein_coding synonymous_variant LOW 699A>C Gly233Gly
M0133160 FDHCBEBC_00006 3978 4 Oral 0.40 protein_coding synonymous_variant LOW 702T>C Ser234Ser
M0133161 FDHCBEBC_00006 4035 3 Oral 0.30 protein_coding synonymous_variant LOW 759C>T Ser253Ser
M0133162 FDHCBEBC_00006 4107 3 Oral 0.30 protein_coding synonymous_variant LOW 831A>G Lys277Lys
M0133163 FDHCBEBC_00006 4351 6 Oral 0.60 protein_coding missense_variant MODERATE 1075G>A Val359Ile
M0133164 FDHCBEBC_00006 4353 6 Oral 0.60 protein_coding synonymous_variant LOW 1077T>A Val359Val
M0133165 FDHCBEBC_00006 4398 6 Oral 0.60 protein_coding synonymous_variant LOW 1122T>C Val374Val
M0133166 FDHCBEBC_00006 4593 4 Oral 0.40 protein_coding synonymous_variant LOW 1317C>T Val439Val
M0133167 FDHCBEBC_00006 4605 5 Oral 0.50 protein_coding synonymous_variant LOW 1329A>G Glu443Glu
M0133168 FDHCBEBC_00006 4626 5 Oral 0.50 protein_coding synonymous_variant LOW 1350T>C Ile450Ile
M0133169 FDHCBEBC_00006 4683 5 Oral 0.50 protein_coding synonymous_variant LOW 1407C>T Pro469Pro
M0133170 FDHCBEBC_00006 4689 4 Oral 0.40 protein_coding synonymous_variant LOW 1413T>A Leu471Leu
M0133171 FDHCBEBC_00006 5007 6 Oral 0.60 protein_coding synonymous_variant LOW 1731T>C Ser577Ser
M0133172 FDHCBEBC_00006 5010 3 Oral 0.30 protein_coding synonymous_variant LOW 1734T>C Thr578Thr
M0133173 FDHCBEBC_00006 5120 6 Oral 0.60 protein_coding missense_variant MODERATE 1844A>G Lys615Arg
M0133174 FDHCBEBC_00007 5213 6 Oral 0.60 protein_coding synonymous_variant LOW 36T>A Val12Val
M0133175 FDHCBEBC_00007 5249 6 Oral 0.60 protein_coding synonymous_variant LOW 72A>G Leu24Leu
M0133176 FDHCBEBC_00007 5252 6 Oral 0.60 protein_coding synonymous_variant LOW 75G>A Leu25Leu
M0133177 FDHCBEBC_00007 5345 6 Oral 0.60 protein_coding synonymous_variant LOW 168A>G Arg56Arg
M0133178 FDHCBEBC_00007 5381 5 Oral 0.50 protein_coding synonymous_variant LOW 204C>A Val68Val
M0133179 FDHCBEBC_00007 5384 6 Oral 0.60 protein_coding synonymous_variant LOW 207A>G Gly69Gly
M0133180 FDHCBEBC_00008 5565 7 Oral 0.70 protein_coding synonymous_variant LOW 129T>C Tyr43Tyr
M0133181 FDHCBEBC_00008 5574 6 Oral 0.60 protein_coding synonymous_variant LOW 138C>A Thr46Thr
M0133182 FDHCBEBC_00008 5619 7 Oral 0.70 protein_coding synonymous_variant LOW 183C>T Pro61Pro
M0133183 FDHCBEBC_00008 5653 6 Oral 0.60 protein_coding synonymous_variant LOW 217C>T Leu73Leu
M0133184 FDHCBEBC_00008 5664 7 Oral 0.70 protein_coding synonymous_variant LOW 228A>G Ser76Ser
M0133185 FDHCBEBC_00008 5916 7 Oral 0.70 protein_coding synonymous_variant LOW 480T>C Phe160Phe
M0133186 FDHCBEBC_00008 5961 5 Oral 0.50 protein_coding synonymous_variant LOW 525T>C Val175Val
M0133187 FDHCBEBC_00008 5970 5 Oral 0.50 protein_coding synonymous_variant LOW 534A>G Leu178Leu
M0133188 FDHCBEBC_00008 6006 3 Oral 0.30 protein_coding synonymous_variant LOW 570C>T Ile190Ile
M0133189 FDHCBEBC_00008 6201 7 Oral 0.70 protein_coding synonymous_variant LOW 765A>G Ala255Ala
M0133190 FDHCBEBC_00009 6401 3 Oral 0.30 protein_coding synonymous_variant LOW 57T>C Gly19Gly
M0133191 FDHCBEBC_00010 6760 7 Oral 0.70 protein_coding missense_variant MODERATE 106A>C Ile36Leu
M0133192 FDHCBEBC_00006 4444 3 Oral 0.30 protein_coding missense_variant MODERATE 1168A>C Lys390Gln
M0133193 FDHCBEBC_00006 4465 4 Oral 0.40 protein_coding synonymous_variant LOW 1189C>T Leu397Leu
M0133194 FDHCBEBC_00006 4575 4 Oral 0.40 protein_coding synonymous_variant LOW 1299A>G Leu433Leu
M0133195 FDHCBEBC_00006 4659 5 Oral 0.50 protein_coding synonymous_variant LOW 1383C>T Arg461Arg
M0133196 FDHCBEBC_00006 4665 5 Oral 0.50 protein_coding synonymous_variant LOW 1389G>A Arg463Arg
M0133197 FDHCBEBC_00006 4668 5 Oral 0.50 protein_coding synonymous_variant LOW 1392C>T Asn464Asn
M0133198 FDHCBEBC_00006 4747 3 Oral 0.30 protein_coding synonymous_variant LOW 1471T>C Leu491Leu
M0133199 FDHCBEBC_00006 4749 3 Oral 0.30 protein_coding missense_variant MODERATE 1473G>T Leu491Phe
M0133200 FDHCBEBC_00006 4782 5 Oral 0.50 protein_coding synonymous_variant LOW 1506G>T Gly502Gly
M0133201 FDHCBEBC_00006 5028 3 Oral 0.30 protein_coding synonymous_variant LOW 1752G>A Lys584Lys
M0133202 FDHCBEBC_00008 5691 4 Oral 0.40 protein_coding synonymous_variant LOW 255T>A Ser85Ser
M0133203 FDHCBEBC_00008 5694 4 Oral 0.40 protein_coding synonymous_variant LOW 258T>A Gly86Gly
M0133204 FDHCBEBC_00008 5715 5 Oral 0.50 protein_coding synonymous_variant LOW 279C>A Ala93Ala
M0133205 FDHCBEBC_00008 5880 4 Oral 0.40 protein_coding synonymous_variant LOW 444T>G Gly148Gly
M0133206 FDHCBEBC_00008 6156 6 Oral 0.60 protein_coding synonymous_variant LOW 720A>G Gly240Gly
M0133207 FDHCBEBC_00008 6237 6 Oral 0.60 protein_coding synonymous_variant LOW 801A>G Leu267Leu
M0133208 FDHCBEBC_00008 6279 6 Oral 0.60 protein_coding synonymous_variant LOW 843T>C Ile281Ile
M0133209 FDHCBEBC_00009 6521 6 Oral 0.60 protein_coding synonymous_variant LOW 177C>T Ala59Ala
M0133210 FDHCBEBC_00010 6723 3 Oral 0.30 protein_coding synonymous_variant LOW 69G>A Gly23Gly
M0133211 FDHCBEBC_00010 6744 4 Oral 0.40 protein_coding synonymous_variant LOW 90C>A Pro30Pro
M0133212 FDHCBEBC_00010 6912 4 Oral 0.40 protein_coding synonymous_variant LOW 258T>C Ser86Ser
M0133213 FDHCBEBC_00010 6913 3 Oral 0.30 protein_coding synonymous_variant LOW 259T>C Leu87Leu
M0133214 FDHCBEBC_00010 6942 3 Oral 0.30 protein_coding synonymous_variant LOW 288C>T Thr96Thr
M0133215 FDHCBEBC_00010 6981 3 Oral 0.30 protein_coding synonymous_variant LOW 327G>A Gln109Gln
M0133216 FDHCBEBC_00010 6988 3 Oral 0.30 protein_coding synonymous_variant LOW 334C>T Leu112Leu
M0133217 FDHCBEBC_00010 6999 5 Oral 0.50 protein_coding synonymous_variant LOW 345G>A Glu115Glu
M0133218 FDHCBEBC_00010 7041 4 Oral 0.40 protein_coding synonymous_variant LOW 387A>G Arg129Arg
M0133219 FDHCBEBC_00010 7053 4 Oral 0.40 protein_coding synonymous_variant LOW 399A>G Gln133Gln
M0133220 FDHCBEBC_00010 7134 4 Oral 0.40 protein_coding synonymous_variant LOW 480T>C Ala160Ala
M0133221 FDHCBEBC_00010 7155 3 Oral 0.30 protein_coding synonymous_variant LOW 501T>A Ile167Ile
M0133222 FDHCBEBC_00010 7194 3 Oral 0.30 protein_coding synonymous_variant LOW 540T>A Ala180Ala
M0133223 FDHCBEBC_00010 7221 3 Oral 0.30 protein_coding missense_variant MODERATE 567C>G Asp189Glu
M0133224 FDHCBEBC_00010 7239 3 Oral 0.30 protein_coding synonymous_variant LOW 585A>C Ala195Ala
M0133225 FDHCBEBC_00010 7296 3 Oral 0.30 protein_coding synonymous_variant LOW 642G>T Ser214Ser
M0133226 FDHCBEBC_00010 7323 3 Oral 0.30 protein_coding synonymous_variant LOW 669A>G Ala223Ala
M0133227 FDHCBEBC_00010 7497 3 Oral 0.30 protein_coding synonymous_variant LOW 843G>A Ala281Ala
M0133228 FDHCBEBC_00010 7656 3 Oral 0.30 protein_coding synonymous_variant LOW 1002C>A Thr334Thr
M0133229 FDHCBEBC_00010 7743 3 Oral 0.30 protein_coding synonymous_variant LOW 1089T>G Thr363Thr
M0133230 FDHCBEBC_00010 7761 5 Oral 0.50 protein_coding synonymous_variant LOW 1107T>C Gly369Gly
M0133231 FDHCBEBC_00010 7851 3 Oral 0.30 protein_coding synonymous_variant LOW 1197A>C Gly399Gly
M0133232 FDHCBEBC_00010 7912 3 Oral 0.30 protein_coding missense_variant MODERATE 1258T>A Leu420Ile
M0133233 FDHCBEBC_00010 7923 4 Oral 0.40 protein_coding synonymous_variant LOW 1269C>A Arg423Arg
M0133234 FDHCBEBC_00010 7953 4 Oral 0.40 protein_coding synonymous_variant LOW 1299A>C Ile433Ile
M0133235 FDHCBEBC_00010 8016 3 Oral 0.30 protein_coding synonymous_variant LOW 1362G>A Gly454Gly
M0133236 FDHCBEBC_00010 8106 3 Oral 0.30 protein_coding synonymous_variant LOW 1452T>C Ile484Ile
M0133237 FDHCBEBC_00010 8115 4 Oral 0.40 protein_coding synonymous_variant LOW 1461C>A Pro487Pro
M0133238 FDHCBEBC_00010 8175 3 Oral 0.30 protein_coding synonymous_variant LOW 1521C>T Pro507Pro
M0133239 FDHCBEBC_00010 8214 4 Oral 0.40 protein_coding synonymous_variant LOW 1560A>G Glu520Glu
M0133240 FDHCBEBC_00010 8301 3 Oral 0.30 protein_coding synonymous_variant LOW 1647G>A Gly549Gly
M0133241 FDHCBEBC_00010 8379 4 Oral 0.40 protein_coding synonymous_variant LOW 1725A>C Val575Val
M0133242 FDHCBEBC_00010 8398 4 Oral 0.40 protein_coding missense_variant MODERATE 1744A>C Thr582Pro
M0133243 FDHCBEBC_00010 8469 4 Oral 0.40 protein_coding synonymous_variant LOW 1815A>T Ser605Ser
M0133244 FDHCBEBC_00010 8499 4 Oral 0.40 protein_coding synonymous_variant LOW 1845C>T Asn615Asn
M0133245 FDHCBEBC_00010 8505 3 Oral 0.30 protein_coding synonymous_variant LOW 1851A>G Leu617Leu
M0133246 FDHCBEBC_00010 8508 3 Oral 0.30 protein_coding synonymous_variant LOW 1854C>T Ile618Ile
M0133247 FDHCBEBC_00010 8559 4 Oral 0.40 protein_coding synonymous_variant LOW 1905T>A Val635Val
M0133248 FDHCBEBC_00010 8595 4 Oral 0.40 protein_coding synonymous_variant LOW 1941T>C Asn647Asn
M0133249 FDHCBEBC_00010 8640 4 Oral 0.40 protein_coding synonymous_variant LOW 1986A>G Gln662Gln
M0133250 FDHCBEBC_00010 8730 3 Oral 0.30 protein_coding synonymous_variant LOW 2076C>T Thr692Thr
M0133251 FDHCBEBC_00010 8736 3 Oral 0.30 protein_coding synonymous_variant LOW 2082T>C Asn694Asn
M0133252 FDHCBEBC_00010 8739 4 Oral 0.40 protein_coding synonymous_variant LOW 2085T>C Val695Val
M0133253 FDHCBEBC_00010 8745 4 Oral 0.40 protein_coding synonymous_variant LOW 2091T>C Thr697Thr
M0133254 FDHCBEBC_00010 8904 3 Oral 0.30 protein_coding synonymous_variant LOW 2250G>A Leu750Leu
M0133255 FDHCBEBC_00010 8928 4 Oral 0.40 protein_coding synonymous_variant LOW 2274A>T Val758Val
M0133256 FDHCBEBC_00010 8958 3 Oral 0.30 protein_coding synonymous_variant LOW 2304A>T Thr768Thr
M0133257 FDHCBEBC_00004 2468 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -35T>C None
M0133258 FDHCBEBC_00005 2914 3 Oral 0.30 protein_coding synonymous_variant LOW 123C>T Ser41Ser
M0133259 FDHCBEBC_00005 2932 3 Oral 0.30 protein_coding synonymous_variant LOW 141G>A Val47Val
M0133260 FDHCBEBC_00005 3250 3 Oral 0.30 protein_coding synonymous_variant LOW 459G>A Glu153Glu
M0133261 FDHCBEBC_00006 4020 3 Oral 0.30 protein_coding synonymous_variant LOW 744T>A Val248Val
M0133262 FDHCBEBC_00006 4281 3 Oral 0.30 protein_coding synonymous_variant LOW 1005G>A Gly335Gly
M0133263 FDHCBEBC_00008 5520 5 Oral 0.50 protein_coding synonymous_variant LOW 84G>A Val28Val
M0133264 FDHCBEBC_00010 7432 3 Oral 0.30 protein_coding synonymous_variant LOW 778C>A Arg260Arg
M0133265 FDHCBEBC_00010 7491 3 Oral 0.30 protein_coding synonymous_variant LOW 837T>C Thr279Thr
M0133266 FDHCBEBC_00006 3552 3 Oral 0.30 protein_coding synonymous_variant LOW 276A>G Gly92Gly
M0133267 FDHCBEBC_00007 5405 3 Oral 0.30 protein_coding synonymous_variant LOW 228T>C Thr76Thr
M0133268 FDHCBEBC_00007 5408 3 Oral 0.30 protein_coding synonymous_variant LOW 231A>G Gln77Gln
M0133269 FDHCBEBC_00008 6195 4 Oral 0.40 protein_coding synonymous_variant LOW 759A>T Ser253Ser
M0133270 FDHCBEBC_00008 6220 3 Oral 0.30 protein_coding missense_variant MODERATE 784G>A Val262Ile
M0133271 FDHCBEBC_00010 6706 3 Oral 0.30 protein_coding missense_variant MODERATE 52C>A Gln18Lys
M0133272 FDHCBEBC_00010 7746 3 Oral 0.30 protein_coding synonymous_variant LOW 1092C>T Ile364Ile
M0133273 FDHCBEBC_00010 7896 3 Oral 0.30 protein_coding synonymous_variant LOW 1242A>T Pro414Pro
M0133274 FDHCBEBC_00010 8037 3 Oral 0.30 protein_coding synonymous_variant LOW 1383G>C Gly461Gly
M0133275 FDHCBEBC_00010 8650 3 Oral 0.30 protein_coding synonymous_variant LOW 1996T>C Leu666Leu
M0133276 FDHCBEBC_00006 9171 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *4014G>A None
M0133277 FDHCBEBC_00006 9173 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *4016G>A None
M0133278 FDHCBEBC_00006 9302 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *4145G>A None
M0133279 FDHCBEBC_00009 6648 3 Oral 0.30 protein_coding missense_variant MODERATE 304T>C Ser102Pro






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term