Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2782
  Reference Plasmid   1111525849862995_bin.15__k141_26911
  Reference Plasmid Size   9138
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0056834 JAGMHJBJ_00005 2255 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -2824G>T None
M0056835 JAGMHJBJ_00005 2258 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -2821A>G None
M0056836 JAGMHJBJ_00003 2636 4 Skin 0.67 protein_coding missense_variant MODERATE 460A>G Thr154Ala
M0056837 JAGMHJBJ_00003 2674 4 Skin 0.67 protein_coding missense_variant MODERATE 422T>C Ile141Thr
M0056838 JAGMHJBJ_00004 3470 3 Skin 0.50 protein_coding synonymous_variant LOW 1038G>A Ala346Ala
M0056839 JAGMHJBJ_00004 3908 3 Skin 0.50 protein_coding synonymous_variant LOW 600G>C Val200Val
M0056840 JAGMHJBJ_00001 478 3 Skin 0.50 protein_coding synonymous_variant LOW 342A>C Thr114Thr
M0056841 JAGMHJBJ_00001 832 3 Skin 0.50 protein_coding synonymous_variant LOW 696G>C Pro232Pro
M0056842 JAGMHJBJ_00002 1326 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -753C>T None
M0056843 JAGMHJBJ_00002 1528 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -551C>T None
M0056844 JAGMHJBJ_00002 1529 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -550A>G None
M0056845 JAGMHJBJ_00002 1545 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -534G>C None
M0056846 JAGMHJBJ_00002 1555 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -524C>T None
M0056847 JAGMHJBJ_00002 1566 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -513T>C None
M0056848 JAGMHJBJ_00002 1577 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -502C>T None
M0056849 JAGMHJBJ_00002 1613 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -466C>T None
M0056850 JAGMHJBJ_00002 1666 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -413C>G None
M0056851 JAGMHJBJ_00002 1732 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -347C>G None
M0056852 JAGMHJBJ_00002 1919 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -160A>G None
M0056853 JAGMHJBJ_00002 1959 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -120A>G None
M0056854 JAGMHJBJ_00002 1983 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -96A>G None
M0056855 JAGMHJBJ_00005 2206 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2873T>C None
M0056856 JAGMHJBJ_00003 3017 3 Skin 0.50 protein_coding synonymous_variant LOW 79C>A Arg27Arg
M0056857 JAGMHJBJ_00003 3066 3 Skin 0.50 protein_coding synonymous_variant LOW 30C>T Arg10Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term