Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2787
  Reference Plasmid   1111525849862995_bin.15__k141_470509
  Reference Plasmid Size   18035
  Reference Plasmid GC Content   0.72
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0056971 OKLLJCDK_00009 8615 5 Skin 0.45 protein_coding synonymous_variant LOW 132C>T Asp44Asp
M0056972 OKLLJCDK_00009 8741 3 Skin 0.27 protein_coding synonymous_variant LOW 258A>G Pro86Pro
M0056973 OKLLJCDK_00009 9125 3 Skin 0.27 protein_coding synonymous_variant LOW 642C>A Ile214Ile
M0056974 OKLLJCDK_00009 9131 3 Skin 0.27 protein_coding synonymous_variant LOW 648G>A Gln216Gln
M0056975 OKLLJCDK_00009 9271 4 Skin 0.36 protein_coding missense_variant MODERATE 788G>A Arg263Lys
M0056976 OKLLJCDK_00009 9776 3 Skin 0.27 protein_coding synonymous_variant LOW 1293C>T Gly431Gly
M0056977 OKLLJCDK_00009 9848 3 Skin 0.27 protein_coding synonymous_variant LOW 1365C>T Asp455Asp
M0056978 OKLLJCDK_00009 9928 5 Skin 0.45 protein_coding missense_variant MODERATE 1445T>A Phe482Tyr
M0056979 OKLLJCDK_00009 9972 4 Skin 0.36 protein_coding synonymous_variant LOW 1489A>C Arg497Arg
M0056980 OKLLJCDK_00009 10376 4 Skin 0.36 protein_coding synonymous_variant LOW 1893C>T Gly631Gly
M0056981 OKLLJCDK_00009 10592 4 Skin 0.36 protein_coding synonymous_variant LOW 2109A>G Ala703Ala
M0056982 OKLLJCDK_00008 10722 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -2407A>G None
M0056983 OKLLJCDK_00008 10738 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2423C>T None
M0056984 OKLLJCDK_00008 10813 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -2498T>C None
M0056985 OKLLJCDK_00014 16983 4 Skin 0.36 protein_coding synonymous_variant LOW 1563T>C Gly521Gly
M0056986 OKLLJCDK_00011 17520 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -3778A>G None
M0056987 OKLLJCDK_00011 17676 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -3934A>G None
M0056988 OKLLJCDK_00011 17742 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4000G>A None
M0056989 OKLLJCDK_00011 17768 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4026A>G None
M0056990 OKLLJCDK_00011 17774 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4032A>G None
M0056991 OKLLJCDK_00011 17969 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4227T>C None
M0056992 OKLLJCDK_00011 17975 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4233A>G None
M0056993 OKLLJCDK_00011 18002 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4260G>C None
M0056994 OKLLJCDK_00011 12482 3 Skin 0.27 protein_coding synonymous_variant LOW 1261T>C Leu421Leu
M0056995 OKLLJCDK_00011 13796 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -54T>C None
M0056996 OKLLJCDK_00011 13827 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -85T>C None
M0056997 OKLLJCDK_00012 14363 5 Skin 0.45 protein_coding synonymous_variant LOW 540T>C His180His
M0056998 OKLLJCDK_00012 14485 4 Skin 0.36 protein_coding missense_variant MODERATE 418A>G Asn140Asp
M0056999 OKLLJCDK_00013 15126 4 Skin 0.36 protein_coding missense_variant MODERATE 26T>C Leu9Pro
M0057000 OKLLJCDK_00011 15175 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1433T>C None
M0057001 OKLLJCDK_00011 15250 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1508T>C None
M0057002 OKLLJCDK_00011 15258 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1516G>A None
M0057003 OKLLJCDK_00011 15278 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1536A>C None
M0057004 OKLLJCDK_00011 15322 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -1580T>C None
M0057005 OKLLJCDK_00011 15336 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1594C>T None
M0057006 OKLLJCDK_00014 15459 3 Skin 0.27 protein_coding synonymous_variant LOW 39C>T Ala13Ala
M0057007 OKLLJCDK_00014 15603 4 Skin 0.36 protein_coding synonymous_variant LOW 183T>C Arg61Arg
M0057008 OKLLJCDK_00014 15607 5 Skin 0.45 protein_coding synonymous_variant LOW 187T>C Leu63Leu
M0057009 OKLLJCDK_00014 15873 5 Skin 0.45 protein_coding synonymous_variant LOW 453C>T Asp151Asp
M0057010 OKLLJCDK_00014 16278 3 Skin 0.27 protein_coding synonymous_variant LOW 858G>A Thr286Thr
M0057011 OKLLJCDK_00014 16468 5 Skin 0.45 protein_coding synonymous_variant LOW 1048T>C Leu350Leu
M0057012 OKLLJCDK_00009 8544 4 Skin 0.36 protein_coding synonymous_variant LOW 61T>C Leu21Leu
M0057013 OKLLJCDK_00009 10067 4 Skin 0.36 protein_coding synonymous_variant LOW 1584G>C Ala528Ala
M0057014 OKLLJCDK_00010 11436 3 Skin 0.27 protein_coding missense_variant MODERATE 524G>A Gly175Asp
M0057015 OKLLJCDK_00011 11824 5 Skin 0.45 protein_coding missense_variant MODERATE 1919T>A Val640Glu
M0057016 OKLLJCDK_00011 11866 5 Skin 0.45 protein_coding missense_variant MODERATE 1877G>A Gly626Asp
M0057017 OKLLJCDK_00011 11953 5 Skin 0.45 protein_coding missense_variant MODERATE 1790T>C Val597Ala
M0057018 OKLLJCDK_00011 12259 4 Skin 0.36 protein_coding missense_variant MODERATE 1484T>C Val495Ala
M0057019 OKLLJCDK_00011 12284 4 Skin 0.36 protein_coding missense_variant MODERATE 1459G>C Ala487Pro
M0057020 OKLLJCDK_00014 15780 4 Skin 0.36 protein_coding synonymous_variant LOW 360G>A Ala120Ala
M0057021 OKLLJCDK_00014 16560 3 Skin 0.27 protein_coding synonymous_variant LOW 1140C>T Arg380Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term