Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2790
  Reference Plasmid   1111525849863945_bin.18__k141_326206
  Reference Plasmid Size   5334
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0057036 IICGFJCN_00002 2468 4 Skin 0.67 protein_coding synonymous_variant LOW 633C>G Leu211Leu
M0057037 IICGFJCN_00002 2469 4 Skin 0.67 protein_coding synonymous_variant LOW 634T>C Leu212Leu
M0057038 IICGFJCN_00002 3434 6 Skin 1.00 protein_coding synonymous_variant LOW 1599T>C Tyr533Tyr
M0057039 IICGFJCN_00004 4775 6 Skin 1.00 protein_coding missense_variant MODERATE 212C>G Pro71Arg
M0057040 IICGFJCN_00002 3344 3 Skin 0.50 protein_coding synonymous_variant LOW 1509G>T Leu503Leu
M0057041 IICGFJCN_00004 4663 3 Skin 0.50 protein_coding synonymous_variant LOW 324T>G Leu108Leu
M0057042 IICGFJCN_00004 4699 3 Skin 0.50 protein_coding synonymous_variant LOW 288C>T Asp96Asp
M0057043 IICGFJCN_00004 4800 3 Skin 0.50 protein_coding missense_variant MODERATE 187C>G Arg63Gly
M0057044 IICGFJCN_00004 4857 3 Skin 0.50 protein_coding missense_variant MODERATE 130A>C Lys44Gln
M0057045 IICGFJCN_00004 4914 3 Skin 0.50 protein_coding missense_variant MODERATE 73A>G Ile25Val
M0057046 IICGFJCN_00005 5223 3 Skin 0.50 protein_coding synonymous_variant LOW 78G>A Arg26Arg
M0057047 IICGFJCN_00005 5256 3 Skin 0.50 protein_coding synonymous_variant LOW 45C>T Pro15Pro






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term