Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2792
  Reference Plasmid   1111525849863945_bin.18__k141_967671
  Reference Plasmid Size   8739
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0057053 LIJHLJCP_00005 3487 3 Skin 0.30 protein_coding synonymous_variant LOW 246A>G Gly82Gly
M0057054 LIJHLJCP_00005 3488 3 Skin 0.30 protein_coding missense_variant MODERATE 247C>A Leu83Met
M0057055 LIJHLJCP_00006 4263 3 Skin 0.30 protein_coding synonymous_variant LOW 621C>G Ala207Ala
M0057056 LIJHLJCP_00007 4792 6 Skin 0.60 protein_coding missense_variant MODERATE 106A>G Thr36Ala
M0057057 LIJHLJCP_00008 5428 4 Skin 0.40 protein_coding synonymous_variant LOW 351T>C Val117Val
M0057058 LIJHLJCP_00003 2078 3 Skin 0.30 protein_coding synonymous_variant LOW 492C>A Ala164Ala
M0057059 LIJHLJCP_00003 2096 3 Skin 0.30 protein_coding synonymous_variant LOW 510G>C Val170Val
M0057060 LIJHLJCP_00003 2129 3 Skin 0.30 protein_coding synonymous_variant LOW 543C>G Thr181Thr
M0057061 LIJHLJCP_00003 2150 3 Skin 0.30 protein_coding synonymous_variant LOW 564A>G Ser188Ser
M0057062 LIJHLJCP_00003 2237 3 Skin 0.30 protein_coding synonymous_variant LOW 651T>C Ala217Ala
M0057063 LIJHLJCP_00003 2285 3 Skin 0.30 protein_coding synonymous_variant LOW 699T>C Thr233Thr
M0057064 LIJHLJCP_00003 2309 3 Skin 0.30 protein_coding synonymous_variant LOW 723C>G Ser241Ser
M0057065 LIJHLJCP_00003 2470 7 Skin 0.70 protein_coding missense_variant MODERATE 884C>T Ser295Phe
M0057066 LIJHLJCP_00004 2962 8 Skin 0.80 protein_coding missense_variant MODERATE 86C>T Ser29Phe
M0057067 LIJHLJCP_00004 2983 8 Skin 0.80 protein_coding missense_variant MODERATE 107C>T Pro36Leu
M0057068 LIJHLJCP_00005 3421 3 Skin 0.30 protein_coding synonymous_variant LOW 180T>C Tyr60Tyr
M0057069 LIJHLJCP_00005 3535 3 Skin 0.30 protein_coding synonymous_variant LOW 294T>C Ile98Ile
M0057070 LIJHLJCP_00005 3551 3 Skin 0.30 protein_coding missense_variant MODERATE 310G>A Ala104Thr
M0057071 LIJHLJCP_00005 3552 3 Skin 0.30 protein_coding missense_variant MODERATE 311C>A Ala104Glu
M0057072 LIJHLJCP_00005 3553 3 Skin 0.30 protein_coding synonymous_variant LOW 312G>T Ala104Ala
M0057073 LIJHLJCP_00005 3592 3 Skin 0.30 protein_coding synonymous_variant LOW 351T>C Arg117Arg
M0057074 LIJHLJCP_00005 3605 3 Skin 0.30 protein_coding synonymous_variant LOW 364T>C Leu122Leu
M0057075 LIJHLJCP_00006 3660 3 Skin 0.30 protein_coding synonymous_variant LOW 18C>A Val6Val
M0057076 LIJHLJCP_00006 3690 3 Skin 0.30 protein_coding synonymous_variant LOW 48T>G Val16Val
M0057077 LIJHLJCP_00006 3787 4 Skin 0.40 protein_coding missense_variant MODERATE 145G>A Ala49Thr
M0057078 LIJHLJCP_00006 3801 4 Skin 0.40 protein_coding synonymous_variant LOW 159G>A Glu53Glu
M0057079 LIJHLJCP_00004 2848 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -29C>T None
M0057080 LIJHLJCP_00004 2972 3 Skin 0.30 protein_coding synonymous_variant LOW 96T>G Val32Val
M0057081 LIJHLJCP_00004 3016 3 Skin 0.30 protein_coding missense_variant MODERATE 140C>T Ala47Val
M0057082 LIJHLJCP_00004 3020 4 Skin 0.40 protein_coding synonymous_variant LOW 144C>G Ala48Ala
M0057083 LIJHLJCP_00004 3021 3 Skin 0.30 protein_coding missense_variant MODERATE 145G>T Gly49Cys
M0057084 LIJHLJCP_00004 3128 3 Skin 0.30 protein_coding synonymous_variant LOW 252T>C Leu84Leu
M0057085 LIJHLJCP_00003 2627 3 Skin 0.30 protein_coding synonymous_variant LOW 1041T>C Asn347Asn
M0057086 LIJHLJCP_00003 2732 3 Skin 0.30 protein_coding synonymous_variant LOW 1146A>G Gln382Gln
M0057087 LIJHLJCP_00003 2735 3 Skin 0.30 protein_coding synonymous_variant LOW 1149A>C Thr383Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term