Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C34
  Reference Plasmid   AP021850.1
  Reference Plasmid Size   389567
  Reference Plasmid GC Content   0.71
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0057498 AHNOJOBF_00090 93175 3 Skin 0.75 protein_coding missense_variant MODERATE 420C>A Ser140Arg
M0057499 AHNOJOBF_00090 93177 3 Skin 0.75 protein_coding missense_variant MODERATE 418A>G Ser140Gly
M0057500 AHNOJOBF_00090 93217 3 Skin 0.75 protein_coding synonymous_variant LOW 378G>C Arg126Arg
M0057501 AHNOJOBF_00090 93255 3 Skin 0.75 protein_coding missense_variant MODERATE 340A>G Ile114Val
M0057502 AHNOJOBF_00090 93365 3 Skin 0.75 protein_coding missense_variant MODERATE 230T>C Met77Thr
M0057503 AHNOJOBF_00093 94873 3 Skin 0.75 protein_coding synonymous_variant LOW 297G>A Glu99Glu
M0057504 AHNOJOBF_00093 94891 3 Skin 0.75 protein_coding synonymous_variant LOW 279C>T Gly93Gly
M0057505 AHNOJOBF_00093 94918 3 Skin 0.75 protein_coding synonymous_variant LOW 252G>C Gly84Gly
M0057506 AHNOJOBF_00093 95074 3 Skin 0.75 protein_coding synonymous_variant LOW 96G>A Ala32Ala
M0057507 AHNOJOBF_00093 95089 3 Skin 0.75 protein_coding synonymous_variant LOW 81G>A Arg27Arg
M0057508 AHNOJOBF_00093 95152 3 Skin 0.75 protein_coding synonymous_variant LOW 18T>C Asp6Asp
M0057509 AHNOJOBF_00094 95208 3 Skin 0.75 protein_coding synonymous_variant LOW 297C>T Asp99Asp
M0057510 AHNOJOBF_00094 95265 3 Skin 0.75 protein_coding synonymous_variant LOW 240G>C Pro80Pro
M0057511 AHNOJOBF_00094 95280 3 Skin 0.75 protein_coding synonymous_variant LOW 225G>C Val75Val
M0057512 AHNOJOBF_00094 95319 3 Skin 0.75 protein_coding synonymous_variant LOW 186G>A Gly62Gly
M0057513 AHNOJOBF_00094 95328 3 Skin 0.75 protein_coding synonymous_variant LOW 177A>C Pro59Pro
M0057514 AHNOJOBF_00094 95340 3 Skin 0.75 protein_coding synonymous_variant LOW 165C>G Leu55Leu
M0057515 AHNOJOBF_00094 95352 3 Skin 0.75 protein_coding synonymous_variant LOW 153G>C Thr51Thr
M0057516 AHNOJOBF_00094 95397 3 Skin 0.75 protein_coding synonymous_variant LOW 108G>C Val36Val
M0057517 AHNOJOBF_00094 95422 3 Skin 0.75 protein_coding missense_variant MODERATE 83A>G His28Arg
M0057518 AHNOJOBF_00094 95435 3 Skin 0.75 protein_coding synonymous_variant LOW 70C>T Leu24Leu
M0057519 AHNOJOBF_00094 95460 3 Skin 0.75 protein_coding synonymous_variant LOW 45A>G Leu15Leu
M0057520 AHNOJOBF_00089 95506 3 Skin 0.75 protein_coding upstream_gene_variant MODIFIER -3689A>G None
M0057521 AHNOJOBF_00089 95519 3 Skin 0.75 protein_coding upstream_gene_variant MODIFIER -3702A>G None
M0057522 AHNOJOBF_00089 95556 3 Skin 0.75 protein_coding upstream_gene_variant MODIFIER -3739A>G None
M0057523 AHNOJOBF_00089 95567 3 Skin 0.75 protein_coding upstream_gene_variant MODIFIER -3750C>A None
M0057524 AHNOJOBF_00089 95582 3 Skin 0.75 protein_coding upstream_gene_variant MODIFIER -3765A>G None
M0057525 AHNOJOBF_00089 95583 3 Skin 0.75 protein_coding upstream_gene_variant MODIFIER -3766G>C None
M0057526 AHNOJOBF_00089 95586 3 Skin 0.75 protein_coding upstream_gene_variant MODIFIER -3769A>G None
M0057527 AHNOJOBF_00089 95635 3 Skin 0.75 protein_coding upstream_gene_variant MODIFIER -3818C>A None
M0057528 AHNOJOBF_00095 95682 3 Skin 0.75 protein_coding missense_variant MODERATE 16C>T Pro6Ser
M0057529 AHNOJOBF_00095 95758 3 Skin 0.75 protein_coding missense_variant MODERATE 92G>C Gly31Ala
M0057530 AHNOJOBF_00095 95832 3 Skin 0.75 protein_coding missense_variant MODERATE 166T>A Tyr56Asn
M0057531 AHNOJOBF_00095 95843 3 Skin 0.75 protein_coding synonymous_variant LOW 177G>T Thr59Thr
M0057532 AHNOJOBF_00095 95911 3 Skin 0.75 protein_coding missense_variant MODERATE 245C>T Thr82Met
M0057533 AHNOJOBF_00095 95912 3 Skin 0.75 protein_coding synonymous_variant LOW 246G>T Thr82Thr
M0057534 AHNOJOBF_00095 95919 3 Skin 0.75 protein_coding missense_variant MODERATE 253G>A Gly85Ser
M0057535 AHNOJOBF_00095 95920 3 Skin 0.75 protein_coding missense_variant MODERATE 254G>A Gly85Asp
M0057536 AHNOJOBF_00095 95932 3 Skin 0.75 protein_coding missense_variant MODERATE 266T>A Leu89Gln
M0057537 AHNOJOBF_00095 95934 3 Skin 0.75 protein_coding missense_variant MODERATE 268C>G Pro90Ala
M0057538 AHNOJOBF_00095 95937 3 Skin 0.75 protein_coding missense_variant MODERATE 271A>G Thr91Ala
M0057539 AHNOJOBF_00095 95938 3 Skin 0.75 protein_coding missense_variant MODERATE 272C>T Thr91Met
M0057540 AHNOJOBF_00095 95958 3 Skin 0.75 protein_coding missense_variant MODERATE 292G>A Ala98Thr
M0057541 AHNOJOBF_00095 95966 3 Skin 0.75 protein_coding synonymous_variant LOW 300G>A Ser100Ser
M0057542 AHNOJOBF_00095 96101 3 Skin 0.75 protein_coding synonymous_variant LOW 435C>T Ser145Ser
M0057543 AHNOJOBF_00095 96117 3 Skin 0.75 protein_coding missense_variant MODERATE 451A>T Ser151Cys
M0057544 AHNOJOBF_00095 96118 3 Skin 0.75 protein_coding missense_variant MODERATE 452G>C Ser151Thr
M0057545 AHNOJOBF_00095 96120 3 Skin 0.75 protein_coding missense_variant MODERATE 454C>A Arg152Ser
M0057546 AHNOJOBF_00095 96139 3 Skin 0.75 protein_coding missense_variant MODERATE 473G>A Ser158Asn
M0057547 AHNOJOBF_00095 96167 3 Skin 0.75 protein_coding synonymous_variant LOW 501T>C Thr167Thr
M0057548 AHNOJOBF_00095 96222 3 Skin 0.75 protein_coding missense_variant MODERATE 556T>A Ser186Thr
M0057549 AHNOJOBF_00095 96224 3 Skin 0.75 protein_coding synonymous_variant LOW 558T>C Ser186Ser
M0057550 AHNOJOBF_00095 96230 3 Skin 0.75 protein_coding synonymous_variant LOW 564T>G Gly188Gly
M0057551 AHNOJOBF_00095 96231 3 Skin 0.75 protein_coding missense_variant MODERATE 565T>G Ser189Ala
M0057552 AHNOJOBF_00095 96234 3 Skin 0.75 protein_coding missense_variant MODERATE 568G>A Gly190Ser
M0057553 AHNOJOBF_00095 96235 3 Skin 0.75 protein_coding missense_variant MODERATE 569G>A Gly190Asp
M0057554 AHNOJOBF_00095 96293 3 Skin 0.75 protein_coding synonymous_variant LOW 627C>T Arg209Arg
M0057555 AHNOJOBF_00095 96330 3 Skin 0.75 protein_coding missense_variant MODERATE 664G>A Asp222Asn
M0057556 AHNOJOBF_00095 96332 3 Skin 0.75 protein_coding synonymous_variant LOW 666C>T Asp222Asp
M0057557 AHNOJOBF_00095 96337 3 Skin 0.75 protein_coding missense_variant MODERATE 671T>A Leu224Gln
M0057558 AHNOJOBF_00095 96435 3 Skin 0.75 protein_coding missense_variant MODERATE 769T>C Ser257Pro
M0057559 AHNOJOBF_00095 96436 3 Skin 0.75 protein_coding stop_gained HIGH 770C>A Ser257*
M0057560 AHNOJOBF_00095 96450 3 Skin 0.75 protein_coding missense_variant MODERATE 784G>T Ala262Ser
M0057561 AHNOJOBF_00095 96452 3 Skin 0.75 protein_coding synonymous_variant LOW 786G>C Ala262Ala
M0057562 AHNOJOBF_00095 96455 3 Skin 0.75 protein_coding synonymous_variant LOW 789A>C Ala263Ala
M0057563 AHNOJOBF_00095 96457 3 Skin 0.75 protein_coding missense_variant MODERATE 791A>C Asn264Thr
M0057564 AHNOJOBF_00095 96476 3 Skin 0.75 protein_coding synonymous_variant LOW 810T>C Arg270Arg
M0057565 AHNOJOBF_00095 96492 3 Skin 0.75 protein_coding missense_variant MODERATE 826A>G Thr276Ala
M0057566 AHNOJOBF_00095 96509 3 Skin 0.75 protein_coding synonymous_variant LOW 843C>G Val281Val
M0057567 AHNOJOBF_00095 96525 3 Skin 0.75 protein_coding missense_variant MODERATE 859T>A Ser287Thr
M0057568 AHNOJOBF_00095 96570 3 Skin 0.75 protein_coding missense_variant MODERATE 904G>A Val302Ile
M0057569 AHNOJOBF_00095 96608 3 Skin 0.75 protein_coding synonymous_variant LOW 942G>C Thr314Thr
M0057570 AHNOJOBF_00095 96689 3 Skin 0.75 protein_coding synonymous_variant LOW 1023C>T Ala341Ala
M0057571 AHNOJOBF_00095 96859 3 Skin 0.75 protein_coding missense_variant MODERATE 1193G>A Arg398Lys
M0057572 AHNOJOBF_00095 96898 3 Skin 0.75 protein_coding missense_variant MODERATE 1232C>T Thr411Ile
M0057573 AHNOJOBF_00095 96935 3 Skin 0.75 protein_coding synonymous_variant LOW 1269C>T Gly423Gly
M0057574 AHNOJOBF_00095 96938 3 Skin 0.75 protein_coding synonymous_variant LOW 1272G>A Ser424Ser
M0057575 AHNOJOBF_00095 96962 3 Skin 0.75 protein_coding synonymous_variant LOW 1296T>C Ala432Ala
M0057576 AHNOJOBF_00095 96992 3 Skin 0.75 protein_coding synonymous_variant LOW 1326C>T Asp442Asp
M0057577 AHNOJOBF_00095 97037 3 Skin 0.75 protein_coding synonymous_variant LOW 1371A>C Ile457Ile
M0057578 AHNOJOBF_00095 97164 3 Skin 0.75 protein_coding missense_variant MODERATE 1498A>C Thr500Pro
M0057579 AHNOJOBF_00095 97189 3 Skin 0.75 protein_coding missense_variant MODERATE 1523C>A Thr508Asn
M0057580 AHNOJOBF_00095 97198 3 Skin 0.75 protein_coding missense_variant MODERATE 1532G>T Ser511Ile
M0057581 AHNOJOBF_00095 97232 3 Skin 0.75 protein_coding synonymous_variant LOW 1566T>C Gly522Gly
M0057582 AHNOJOBF_00095 97294 3 Skin 0.75 protein_coding missense_variant MODERATE 1628G>C Gly543Ala
M0057583 AHNOJOBF_00095 97367 3 Skin 0.75 protein_coding synonymous_variant LOW 1701G>T Gly567Gly
M0057584 AHNOJOBF_00095 97376 3 Skin 0.75 protein_coding synonymous_variant LOW 1710G>C Val570Val
M0057585 AHNOJOBF_00095 97450 3 Skin 0.75 protein_coding missense_variant MODERATE 1784G>C Ser595Thr
M0057586 AHNOJOBF_00095 97451 3 Skin 0.75 protein_coding synonymous_variant LOW 1785C>T Ser595Ser
M0057587 AHNOJOBF_00095 97477 3 Skin 0.75 protein_coding missense_variant MODERATE 1811C>T Ala604Val
M0057588 AHNOJOBF_00095 97511 3 Skin 0.75 protein_coding synonymous_variant LOW 1845A>G Gln615Gln
M0057589 AHNOJOBF_00095 97637 3 Skin 0.75 protein_coding synonymous_variant LOW 1971G>A Pro657Pro
M0057590 AHNOJOBF_00095 97642 3 Skin 0.75 protein_coding missense_variant MODERATE 1976G>A Ser659Asn
M0057591 AHNOJOBF_00095 97694 3 Skin 0.75 protein_coding synonymous_variant LOW 2028G>A Gly676Gly
M0057592 AHNOJOBF_00095 97829 3 Skin 0.75 protein_coding synonymous_variant LOW 2163C>T Gly721Gly
M0057593 AHNOJOBF_00095 97884 3 Skin 0.75 protein_coding missense_variant MODERATE 2218A>G Asn740Asp
M0057594 AHNOJOBF_00095 97885 3 Skin 0.75 protein_coding missense_variant MODERATE 2219A>C Asn740Thr
M0057595 AHNOJOBF_00095 97896 3 Skin 0.75 protein_coding missense_variant MODERATE 2230T>G Ser744Ala
M0057596 AHNOJOBF_00095 97926 3 Skin 0.75 protein_coding missense_variant MODERATE 2260G>C Val754Leu
M0057597 AHNOJOBF_00095 97936 3 Skin 0.75 protein_coding missense_variant MODERATE 2270G>C Gly757Ala
M0057598 AHNOJOBF_00095 97970 3 Skin 0.75 protein_coding synonymous_variant LOW 2304T>C Cys768Cys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
AHNOJOBF_00236 Zinc (Zn) 71.7 4.9e-39 12 124 0.8828 0.9262 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
AHNOJOBF_00173 BBN96660.1|GH42 100 0 1 681 1 1
AHNOJOBF_00185 BBN96672.1|GH114 100 4.15e-260 1 398 1 1
AHNOJOBF_00194 BBN96681.1|CE9 100 4.16e-277 1 391 1 1
AHNOJOBF_00226 BBN96714.1|CBM12|GH18 100 0 1 703 1 1
AHNOJOBF_00232 BBN96720.1|GH3 100 0 1 486 1 1
AHNOJOBF_00303 BBN96791.1|GT2|GT4 100 0 1 650 1 1
AHNOJOBF_00323 BBN96811.1|GT4 100 0 1 486 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
AHNOJOBF_00144 4.A.2.1.18 79.4 9.6e-253 1 592 0.9818 0.9900 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.2 The PTS Fructose-Mannitol (Fru) Family