Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C40
  Reference Plasmid   AP026530.1
  Reference Plasmid Size   655459
  Reference Plasmid GC Content   0.51
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0142986 CFLJOCJI_00444 482756 6 Gut 0.21 protein_coding missense_variant MODERATE 265A>G Ile89Val
M0142987 CFLJOCJI_00445 483135 6 Gut 0.21 protein_coding missense_variant MODERATE 901A>C Ser301Arg
M0142988 CFLJOCJI_00444 482197 3 Gut 0.11 protein_coding missense_variant MODERATE 824C>T Thr275Met
M0142989 CFLJOCJI_00444 482256 3 Gut 0.11 protein_coding synonymous_variant LOW 765A>C Leu255Leu
M0142990 CFLJOCJI_00444 482755 3 Gut 0.11 protein_coding missense_variant MODERATE 266T>C Ile89Thr
M0142991 CFLJOCJI_00440 477979 3 Gut 0.11 protein_coding synonymous_variant LOW 564T>C Gly188Gly
M0142992 CFLJOCJI_00442 478944 3 Gut 0.11 protein_coding synonymous_variant LOW 1659T>C Pro553Pro
M0142993 CFLJOCJI_00444 482637 4 Gut 0.14 protein_coding synonymous_variant LOW 384T>C Asn128Asn






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
CKPCBMCH_00034 VFG013412 LOS 77.3 1.1e-136 1 304 0.9967 0.9967 Immune modulation UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase experiment
CKPCBMCH_00147 VFG034772 TTSS secreted effectors 96.7 0 1 728 1.0 1 Effector delivery system Type III secretion system effector EspL4 experiment
CKPCBMCH_00170 VFG034866 TTSS secreted effectors 89.1 6.7e-225 1 431 1.0 0.8194 Effector delivery system Type III secretion system effector EspX4 experiment
CKPCBMCH_00206 VFG034875 TTSS secreted effectors 96.5 7.3e-240 1 430 1.0 1 Effector delivery system Type III secretion system effector EspX5 experiment
CKPCBMCH_00255 VFG052339 PmrAB 85.9 1.5e-169 4 358 0.9699 0.9972 Regulation sensory kinase PmrB experiment
CKPCBMCH_00256 VFG052340 PmrAB 91 3.8e-115 1 222 1.0 1 Regulation response regulator PmrA experiment
CKPCBMCH_00287 VFG001855 Hsp60 75.2 3.8e-225 1 548 1.0 0.9982 Adherence Hsp60, 60K heat shock protein HtpB experiment
CKPCBMCH_00570 VFG034851 TTSS secreted effectors 92.2 2.5e-257 1 473 1.0 1 Effector delivery system Type III secretion system effector EspX1 experiment
CKPCBMCH_00604 VFG034895 TTSS secreted effectors 77.7 1.4e-116 1 264 0.967 1.056 Effector delivery system Type III secretion system effector EspY1 experiment
CFLJOCJI_00034 VFG013412 LOS 77.3 1.1e-136 1 304 0.9967 0.9967 Immune modulation UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase experiment
CFLJOCJI_00147 VFG034772 TTSS secreted effectors 96.7 0 1 728 1.0 1 Effector delivery system Type III secretion system effector EspL4 experiment
CFLJOCJI_00170 VFG034866 TTSS secreted effectors 89.1 6.7e-225 1 431 1.0 0.8194 Effector delivery system Type III secretion system effector EspX4 experiment
CFLJOCJI_00206 VFG034875 TTSS secreted effectors 96.5 7.3e-240 1 430 1.0 1 Effector delivery system Type III secretion system effector EspX5 experiment
CFLJOCJI_00255 VFG052339 PmrAB 85.9 1.5e-169 4 358 0.9699 0.9972 Regulation sensory kinase PmrB experiment
CFLJOCJI_00256 VFG052340 PmrAB 91 3.8e-115 1 222 1.0 1 Regulation response regulator PmrA experiment
CFLJOCJI_00287 VFG001855 Hsp60 75.2 3.8e-225 1 548 1.0 0.9982 Adherence Hsp60, 60K heat shock protein HtpB experiment
CFLJOCJI_00570 VFG034851 TTSS secreted effectors 92.2 2.5e-257 1 473 1.0 1 Effector delivery system Type III secretion system effector EspX1 experiment
CFLJOCJI_00604 VFG034895 TTSS secreted effectors 77.7 1.4e-116 1 264 0.967 1.056 Effector delivery system Type III secretion system effector EspY1 experiment
CKPCBMCH_00034 VFG013414 LOS 77.3 6.2e-136 1 304 0.9967 0.9967 Immune modulation UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase prediction
CKPCBMCH_00042 VFG046011 Hemorrhagic E.coli pilus (HCP) 100 2.4e-225 1 400 1.0 1 Adherence protein transport protein HofC prediction
CKPCBMCH_00043 VFG045974 Hemorrhagic E.coli pilus (HCP) 99.8 2.7e-268 1 461 1.0 1 Adherence type II secretion system protein GspE prediction
CKPCBMCH_00044 VFG045936 Hemorrhagic E.coli pilus (HCP) 100 5.1e-80 1 146 1.0 1 Adherence prepilin peptidase-dependent pilin prediction
CKPCBMCH_00116 VFG013167 LOS 72.9 5e-110 1 262 1.0 1 Immune modulation UDP-N-acetylglucosamine acyltransferase prediction
CKPCBMCH_00147 VFG034772 TTSS secreted effectors 96.7 0 1 728 1.0 1 Effector delivery system Type III secretion system effector EspL4 prediction
CKPCBMCH_00155 VFG013531 Exopolysaccharide 77.6 1e-258 1 548 0.9982 0.9982 Immune modulation glucose-6-phosphate isomerase prediction
CKPCBMCH_00170 VFG034866 TTSS secreted effectors 89.1 5e-224 1 431 1.0 0.8194 Effector delivery system Type III secretion system effector EspX4 prediction
CKPCBMCH_00206 VFG034875 TTSS secreted effectors 96.5 5.5e-239 1 430 1.0 1 Effector delivery system Type III secretion system effector EspX5 prediction
CKPCBMCH_00255 VFG052339 PmrAB 85.9 1.1e-168 4 358 0.9699 0.9972 Regulation sensory kinase PmrB prediction
CKPCBMCH_00256 VFG052340 PmrAB 91 2.8e-114 1 222 1.0 1 Regulation response regulator PmrA prediction
CKPCBMCH_00287 VFG045692 Hsp60 74.8 2e-225 1 548 1.0 0.9946 Adherence Hsp60, 60K heat shock protein HtpB prediction
CKPCBMCH_00444 VFG013087 MsbB2 97.1 1.2e-182 1 314 1.0 1 Others lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase prediction
CKPCBMCH_00445 VFG020186 VirK 98.1 1e-186 1 316 1.0 1 Others virulence factor VirK prediction
CKPCBMCH_00570 VFG034858 TTSS secreted effectors 96.6 3.6e-268 1 473 1.0 1 Effector delivery system Type III secretion system effector EspX1 prediction
CKPCBMCH_00604 VFG034895 TTSS secreted effectors 77.7 1.1e-115 1 264 0.967 1.056 Effector delivery system Type III secretion system effector EspY1 prediction
CFLJOCJI_00034 VFG013414 LOS 77.3 6.2e-136 1 304 0.9967 0.9967 Immune modulation UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase prediction
CFLJOCJI_00042 VFG046011 Hemorrhagic E.coli pilus (HCP) 100 2.4e-225 1 400 1.0 1 Adherence protein transport protein HofC prediction
CFLJOCJI_00043 VFG045974 Hemorrhagic E.coli pilus (HCP) 99.8 2.7e-268 1 461 1.0 1 Adherence type II secretion system protein GspE prediction
CFLJOCJI_00044 VFG045936 Hemorrhagic E.coli pilus (HCP) 100 5.1e-80 1 146 1.0 1 Adherence prepilin peptidase-dependent pilin prediction
CFLJOCJI_00116 VFG013167 LOS 72.9 5e-110 1 262 1.0 1 Immune modulation UDP-N-acetylglucosamine acyltransferase prediction
CFLJOCJI_00147 VFG034772 TTSS secreted effectors 96.7 0 1 728 1.0 1 Effector delivery system Type III secretion system effector EspL4 prediction
CFLJOCJI_00155 VFG013531 Exopolysaccharide 77.6 1e-258 1 548 0.9982 0.9982 Immune modulation glucose-6-phosphate isomerase prediction
CFLJOCJI_00170 VFG034866 TTSS secreted effectors 89.1 5e-224 1 431 1.0 0.8194 Effector delivery system Type III secretion system effector EspX4 prediction
CFLJOCJI_00206 VFG034875 TTSS secreted effectors 96.5 5.5e-239 1 430 1.0 1 Effector delivery system Type III secretion system effector EspX5 prediction
CFLJOCJI_00255 VFG052339 PmrAB 85.9 1.1e-168 4 358 0.9699 0.9972 Regulation sensory kinase PmrB prediction
CFLJOCJI_00256 VFG052340 PmrAB 91 2.8e-114 1 222 1.0 1 Regulation response regulator PmrA prediction
CFLJOCJI_00287 VFG045692 Hsp60 74.8 2e-225 1 548 1.0 0.9946 Adherence Hsp60, 60K heat shock protein HtpB prediction
CFLJOCJI_00444 VFG013087 MsbB2 97.1 1.2e-182 1 314 1.0 1 Others lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase prediction
CFLJOCJI_00445 VFG020186 VirK 98.1 1e-186 1 316 1.0 1 Others virulence factor VirK prediction
CFLJOCJI_00570 VFG034858 TTSS secreted effectors 96.6 3.6e-268 1 473 1.0 1 Effector delivery system Type III secretion system effector EspX1 prediction
CFLJOCJI_00604 VFG034895 TTSS secreted effectors 77.7 1.1e-115 1 264 0.967 1.056 Effector delivery system Type III secretion system effector EspY1 prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
CKPCBMCH_00059 Copper (Cu) 100 1.50000000000017e-311 1 516 1.0000 1.0000 experiment
CKPCBMCH_00128 Copper (Cu) 100 1e-137 1 236 1.0000 1.0000 experiment
CKPCBMCH_00141 Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid] 100 6.5e-67 1 127 1.0000 1.0000 experiment
CKPCBMCH_00148 Sodium acetate [class: Acetate] 100 1e-154 1 274 1.0000 1.0000 experiment
CKPCBMCH_00178 Zinc (Zn) 100 2.8e-97 1 171 1.0000 1.0000 experiment
CKPCBMCH_00202 Zinc (Zn), Cyclohexane [class: Cycloalkane] 100 5.5e-59 1 107 1.0000 1.0000 experiment
CKPCBMCH_00203 Methyl Viologen [class: Paraquat] 99.4 4.4e-86 1 154 1.0000 1.0000 experiment
CKPCBMCH_00207 Sodium Glycocholate [class: Acid], Sodium acetate [class: Acetate] 100 9.3e-304 1 549 1.0000 1.0000 experiment
CKPCBMCH_00223 Acriflavine [class: Acridine], Tetraphenylarsonium (TPA) [class: Quaternary Ammonium Compounds (QACs)] 100 8.4e-186 1 343 1.0000 1.0000 experiment
CKPCBMCH_00281 Copper (Cu) 100 1.8e-60 1 112 1.0000 1.0000 experiment
CKPCBMCH_00294 Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate] 100 2.4e-51 1 105 1.0000 1.0000 experiment
CKPCBMCH_00394 Cobalt (Co), Magnesium (Mg) 99.9 0 1 898 1.0000 1.0000 experiment
CKPCBMCH_00452 Nickel (Ni), Cobalt (Co) 100 3.7e-146 1 255 1.0000 1.0000 experiment
CKPCBMCH_00453 Nickel (Ni), Cobalt (Co) 99.7 4e-174 1 318 1.0000 1.0000 experiment
CKPCBMCH_00492 Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Tetraphenylarsonium (TPA) [class: Quaternary Ammonium Compounds (QACs)] 97.1 6.7e-222 1 410 1.0000 1.0000 experiment
CKPCBMCH_00541 Silver (Ag), Mercury (Hg), Cadmium (Cd), Cyclohexane [class: Cycloalkane], Pentane [class: Alkane], n-hexane [class: Alkane], Diphenyl Ether [class: Phenyl] 100 6.9e-173 1 289 1.0000 1.0000 experiment
CKPCBMCH_00598 Cobalt (Co), Magnesium (Mg) 94.4 1.4e-66 1 125 1.0000 1.0000 experiment
CKPCBMCH_00602 n-hexane [class: Alkane] 99.9 0 1 784 1.0000 1.0000 experiment
CFLJOCJI_00059 Copper (Cu) 100 1.50000000000017e-311 1 516 1.0000 1.0000 experiment
CFLJOCJI_00128 Copper (Cu) 100 1e-137 1 236 1.0000 1.0000 experiment
CFLJOCJI_00141 Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid] 100 6.5e-67 1 127 1.0000 1.0000 experiment
CFLJOCJI_00148 Sodium acetate [class: Acetate] 100 1e-154 1 274 1.0000 1.0000 experiment
CFLJOCJI_00178 Zinc (Zn) 100 2.8e-97 1 171 1.0000 1.0000 experiment
CFLJOCJI_00202 Zinc (Zn), Cyclohexane [class: Cycloalkane] 100 5.5e-59 1 107 1.0000 1.0000 experiment
CFLJOCJI_00203 Methyl Viologen [class: Paraquat] 99.4 4.4e-86 1 154 1.0000 1.0000 experiment
CFLJOCJI_00207 Sodium Glycocholate [class: Acid], Sodium acetate [class: Acetate] 100 9.3e-304 1 549 1.0000 1.0000 experiment
CFLJOCJI_00223 Acriflavine [class: Acridine], Tetraphenylarsonium (TPA) [class: Quaternary Ammonium Compounds (QACs)] 100 8.4e-186 1 343 1.0000 1.0000 experiment
CFLJOCJI_00281 Copper (Cu) 100 1.8e-60 1 112 1.0000 1.0000 experiment
CFLJOCJI_00294 Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate] 100 2.4e-51 1 105 1.0000 1.0000 experiment
CFLJOCJI_00394 Cobalt (Co), Magnesium (Mg) 99.9 0 1 898 1.0000 1.0000 experiment
CFLJOCJI_00452 Nickel (Ni), Cobalt (Co) 100 3.7e-146 1 255 1.0000 1.0000 experiment
CFLJOCJI_00453 Nickel (Ni), Cobalt (Co) 99.7 4e-174 1 318 1.0000 1.0000 experiment
CFLJOCJI_00492 Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Tetraphenylarsonium (TPA) [class: Quaternary Ammonium Compounds (QACs)] 97.1 6.7e-222 1 410 1.0000 1.0000 experiment
CFLJOCJI_00541 Silver (Ag), Mercury (Hg), Cadmium (Cd), Cyclohexane [class: Cycloalkane], Pentane [class: Alkane], n-hexane [class: Alkane], Diphenyl Ether [class: Phenyl] 100 6.9e-173 1 289 1.0000 1.0000 experiment
CFLJOCJI_00598 Cobalt (Co), Magnesium (Mg) 94.4 1.4e-66 1 125 1.0000 1.0000 experiment
CFLJOCJI_00602 n-hexane [class: Alkane] 99.9 0 1 784 1.0000 1.0000 experiment
CKPCBMCH_00059 Copper (Cu) 100 3.4e-309 1 516 1.0000 0.9754 prediction
CKPCBMCH_00128 Copper (Cu) 100 2.3e-135 1 236 1.0000 1.0000 prediction
CKPCBMCH_00141 Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid] 100 1.5e-64 1 127 1.0000 1.0000 prediction
CKPCBMCH_00148 Sodium acetate [class: Acetate] 100 2.4e-152 1 274 1.0000 0.9547 prediction
CKPCBMCH_00178 Zinc (Zn) 100 6.4e-95 1 171 1.0000 1.0000 prediction
CKPCBMCH_00202 Zinc (Zn), Cyclohexane [class: Cycloalkane] 100 1.3e-56 1 107 1.0000 1.0000 prediction
CKPCBMCH_00203 Methyl Viologen [class: Paraquat] 100 2.7e-84 1 154 1.0000 1.0000 prediction
CKPCBMCH_00207 Sodium Glycocholate [class: Acid], Sodium acetate [class: Acetate] 100 2.1e-301 1 549 1.0000 1.0000 prediction
CKPCBMCH_00223 Acriflavine [class: Acridine], Tetraphenylarsonium (TPA) [class: Quaternary Ammonium Compounds (QACs)] 100 1.9e-183 1 343 1.0000 1.0000 prediction
CKPCBMCH_00255 Iron (Fe) 99.7 7e-200 1 366 1.0000 1.0000 prediction
CKPCBMCH_00256 Acriflavine [class: Acridine], Ethidium Bromide [class: Phenanthridine] 100 5e-124 1 222 1.0000 1.0000 prediction
CKPCBMCH_00281 Copper (Cu) 100 4.1e-58 1 112 1.0000 0.9825 prediction
CKPCBMCH_00282 Copper (Cu) 100 6.8e-202 1 389 0.8984 0.7811 prediction
CKPCBMCH_00394 Cobalt (Co), Magnesium (Mg) 100 0 1 898 1.0000 1.0000 prediction
CKPCBMCH_00452 Nickel (Ni), Cobalt (Co) 100 8.5e-144 1 255 1.0000 1.0000 prediction
CKPCBMCH_00453 Nickel (Ni), Cobalt (Co) 100 2.4e-172 1 318 1.0000 0.9695 prediction
CKPCBMCH_00492 Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Tetraphenylarsonium (TPA) [class: Quaternary Ammonium Compounds (QACs)] 100 1.2e-224 1 410 1.0000 1.0000 prediction
CKPCBMCH_00541 Silver (Ag), Mercury (Hg), Cadmium (Cd), Cyclohexane [class: Cycloalkane], Pentane [class: Alkane], n-hexane [class: Alkane], Diphenyl Ether [class: Phenyl] 100 1.6e-170 1 289 1.0000 1.0000 prediction
CKPCBMCH_00598 Cobalt (Co), Magnesium (Mg) 100 2.9e-68 1 125 1.0000 1.0000 prediction
CKPCBMCH_00602 n-hexane [class: Alkane] 100 0 1 784 1.0000 1.0000 prediction
CFLJOCJI_00059 Copper (Cu) 100 3.4e-309 1 516 1.0000 0.9754 prediction
CFLJOCJI_00128 Copper (Cu) 100 2.3e-135 1 236 1.0000 1.0000 prediction
CFLJOCJI_00141 Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid] 100 1.5e-64 1 127 1.0000 1.0000 prediction
CFLJOCJI_00148 Sodium acetate [class: Acetate] 100 2.4e-152 1 274 1.0000 0.9547 prediction
CFLJOCJI_00178 Zinc (Zn) 100 6.4e-95 1 171 1.0000 1.0000 prediction
CFLJOCJI_00202 Zinc (Zn), Cyclohexane [class: Cycloalkane] 100 1.3e-56 1 107 1.0000 1.0000 prediction
CFLJOCJI_00203 Methyl Viologen [class: Paraquat] 100 2.7e-84 1 154 1.0000 1.0000 prediction
CFLJOCJI_00207 Sodium Glycocholate [class: Acid], Sodium acetate [class: Acetate] 100 2.1e-301 1 549 1.0000 1.0000 prediction
CFLJOCJI_00223 Acriflavine [class: Acridine], Tetraphenylarsonium (TPA) [class: Quaternary Ammonium Compounds (QACs)] 100 1.9e-183 1 343 1.0000 1.0000 prediction
CFLJOCJI_00255 Iron (Fe) 99.7 7e-200 1 366 1.0000 1.0000 prediction
CFLJOCJI_00256 Acriflavine [class: Acridine], Ethidium Bromide [class: Phenanthridine] 100 5e-124 1 222 1.0000 1.0000 prediction
CFLJOCJI_00281 Copper (Cu) 100 4.1e-58 1 112 1.0000 0.9825 prediction
CFLJOCJI_00282 Copper (Cu) 100 6.8e-202 1 389 0.8984 0.7811 prediction
CFLJOCJI_00394 Cobalt (Co), Magnesium (Mg) 100 0 1 898 1.0000 1.0000 prediction
CFLJOCJI_00452 Nickel (Ni), Cobalt (Co) 100 8.5e-144 1 255 1.0000 1.0000 prediction
CFLJOCJI_00453 Nickel (Ni), Cobalt (Co) 100 2.4e-172 1 318 1.0000 0.9695 prediction
CFLJOCJI_00492 Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Tetraphenylarsonium (TPA) [class: Quaternary Ammonium Compounds (QACs)] 100 1.2e-224 1 410 1.0000 1.0000 prediction
CFLJOCJI_00541 Silver (Ag), Mercury (Hg), Cadmium (Cd), Cyclohexane [class: Cycloalkane], Pentane [class: Alkane], n-hexane [class: Alkane], Diphenyl Ether [class: Phenyl] 100 1.6e-170 1 289 1.0000 1.0000 prediction
CFLJOCJI_00598 Cobalt (Co), Magnesium (Mg) 100 2.9e-68 1 125 1.0000 1.0000 prediction
CFLJOCJI_00602 n-hexane [class: Alkane] 100 0 1 784 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
CKPCBMCH_00015 ARO:3003843 99.4 2.13e-230 1 314 1.0000 1.0000 nucleoside antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
CKPCBMCH_00022 ARO:3007421 93.5 0 1 588 1.0000 1.0000 cephalosporin Penicillin-binding protein mutations conferring resistance to beta-lactam antibiotics antibiotic target alteration
CKPCBMCH_00166 ARO:3004126 98.2 0 1 446 1.0000 1.0000 fluoroquinolone antibiotic Sugar Porin (SP) reduced permeability to antibiotic
CKPCBMCH_00202 ARO:3003511 100 1.52e-76 1 107 1.0000 1.0000 fluoroquinolone antibiotic ATP-binding cassette (ABC) antibiotic efflux pump antibiotic target alteration
CKPCBMCH_00203 ARO:3003381 99.4 2.94e-110 1 154 1.0000 1.0000 fluoroquinolone antibiotic ATP-binding cassette (ABC) antibiotic efflux pump antibiotic target alteration
CKPCBMCH_00221 ARO:3003550 100 0 1 488 1.0000 1.0000 nucleoside antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
CKPCBMCH_00222 ARO:3003549 99.9 0 1 683 1.0000 1.0000 nucleoside antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
CKPCBMCH_00223 ARO:3003548 100 1.09e-233 1 343 1.0000 1.0000 nucleoside antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
CKPCBMCH_00257 ARO:3003576 99.6 0 1 547 1.0000 1.0000 peptide antibiotic pmr phosphoethanolamine transferase antibiotic target alteration
CKPCBMCH_00296 ARO:3006876 98.1 1.5e-280 1 377 1.0000 1.0000 cephalosporin EC beta-lactamase antibiotic inactivation
CKPCBMCH_00492 ARO:3001214 97.1 1.19e-280 1 410 1.0000 1.0000 fluoroquinolone antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
CKPCBMCH_00602 ARO:3005059 82.2 0 1 784 1.0026 1.0051 carbapenem ATP-binding cassette (ABC) antibiotic efflux pump antibiotic efflux
CFLJOCJI_00015 ARO:3003843 99.4 2.13e-230 1 314 1.0000 1.0000 nucleoside antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
CFLJOCJI_00022 ARO:3007421 93.5 0 1 588 1.0000 1.0000 cephalosporin Penicillin-binding protein mutations conferring resistance to beta-lactam antibiotics antibiotic target alteration
CFLJOCJI_00166 ARO:3004126 98.2 0 1 446 1.0000 1.0000 fluoroquinolone antibiotic Sugar Porin (SP) reduced permeability to antibiotic
CFLJOCJI_00202 ARO:3003511 100 1.52e-76 1 107 1.0000 1.0000 fluoroquinolone antibiotic ATP-binding cassette (ABC) antibiotic efflux pump antibiotic target alteration
CFLJOCJI_00203 ARO:3003381 99.4 2.94e-110 1 154 1.0000 1.0000 fluoroquinolone antibiotic ATP-binding cassette (ABC) antibiotic efflux pump antibiotic target alteration
CFLJOCJI_00221 ARO:3003550 100 0 1 488 1.0000 1.0000 nucleoside antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
CFLJOCJI_00222 ARO:3003549 99.9 0 1 683 1.0000 1.0000 nucleoside antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
CFLJOCJI_00223 ARO:3003548 100 1.09e-233 1 343 1.0000 1.0000 nucleoside antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
CFLJOCJI_00257 ARO:3003576 99.6 0 1 547 1.0000 1.0000 peptide antibiotic pmr phosphoethanolamine transferase antibiotic target alteration
CFLJOCJI_00296 ARO:3006876 98.1 1.5e-280 1 377 1.0000 1.0000 cephalosporin EC beta-lactamase antibiotic inactivation
CFLJOCJI_00492 ARO:3001214 97.1 1.19e-280 1 410 1.0000 1.0000 fluoroquinolone antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
CFLJOCJI_00602 ARO:3005059 82.2 0 1 784 1.0026 1.0051 carbapenem ATP-binding cassette (ABC) antibiotic efflux pump antibiotic efflux






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
CKPCBMCH_00007 PHI:123649 yabL 100 2.5e-191 1 327 1.0000 1.0000 rodents neonatal meningitis regulatory protein unaffected pathogenicity
CKPCBMCH_00011 PHI:8965 leuD 88.1 6.5e-105 1 201 1.0000 1.0000 rodents pneumonia 3-isopropylmalate dehydratase small subunit reduced virulence
CKPCBMCH_00012 PHI:8964 leuC 97.4 3.4e-266 1 466 1.0000 1.0000 rodents pneumonia 3-isopropylmalate dehydratase large subunit reduced virulence
CKPCBMCH_00013 PHI:8862 LeuB 94.2 5.3e-198 1 363 1.0000 1.0000 rodents infection 3-isopropylmalate dehydrogenase reduced virulence
CKPCBMCH_00014 PHI:8962 leuA 92.7 9.4e-281 1 523 1.0000 1.0000 rodents pneumonia 2-isopropylmalate synthase reduced virulence
CKPCBMCH_00018 PHI:2672 fruR 98.8 2.2e-190 1 334 1.0000 1.0000 rodents food poisoning regulators of systemic infection reduced virulence
CKPCBMCH_00049 PHI:3135 pdhR 86.2 5.5e-117 1 253 0.9961 0.9961 rodents gut-associated disease; diarrhea; enteritis; colitis part of the pyruvate-tricarboxylic acid cycle node reduced virulence
CKPCBMCH_00056 PHI:9152 speD 100 2.4e-155 1 264 1.0000 1.0000 birds colibacillosis S-adenosylmethionine decarboxylase proenzyme unaffected pathogenicity
CKPCBMCH_00057 PHI:9153 speE 100 6.1e-173 1 288 1.0000 1.0000 birds colibacillosis polyamine aminopropyltransferase unaffected pathogenicity
CKPCBMCH_00059 PHI:10985 cueO 100 2.50000000000002e-310 1 516 1.0000 1.0000 rodents infection blue copper oxidase reduced virulence
CKPCBMCH_00071 PHI:6567 yadC 100 7.2e-244 1 412 1.0000 1.0000 birds colibacillosis fimbrial-like adhesin protein reduced virulence
CKPCBMCH_00081 PHI:6508 DksA 98.7 5.8e-82 1 151 1.0000 1.0000 rodents salmonellosis response regulator reduced virulence
CKPCBMCH_00088 PHI:10989 fhuD 100 4.8e-173 1 296 1.0000 1.0000 rodents infection iron(III) hydroxamate ABC transporter periplasmic binding protein unaffected pathogenicity
CKPCBMCH_00097 PHI:8690 degP (ROD_01651) 94.3 2.2e-244 1 474 1.0000 1.0000 rodents colitis periplasmic serine endoprotease DegP-like loss of pathogenicity
CKPCBMCH_00103 PHI:9334 map 89.8 1.9e-141 1 264 1.0000 1.0000 rodents colitis effector protein effector (plant avirulence determinant)
CKPCBMCH_00128 PHI:8514 nlpE 78.9 2.5e-108 2 233 0.9831 0.9957 rodents colitis outer-membrane lipoprotein unaffected pathogenicity
CKPCBMCH_00143 PHI:9313 metA 84.1 2.7e-158 1 309 1.0000 1.0000 eudicots fire blight homoserine O-succinyltransferase reduced virulence
CKPCBMCH_00155 PHI:9310 pgi 83.8 2.2e-280 1 548 0.9982 1.0000 eudicots fire blight glucose-6-phosphate isomerase reduced virulence
CKPCBMCH_00167 PHI:123650 malM 100 2e-166 1 306 1.0000 1.0000 rodents neonatal meningitis regulatory protein unaffected pathogenicity
CKPCBMCH_00182 PHI:7661 pspG 82.5 8.2e-27 1 80 1.0000 1.0000 rodents salmonellosis phage-shock protein unaffected pathogenicity
CKPCBMCH_00207 PHI:9229 actP 100 1.6e-302 1 549 1.0000 1.0000 birds avian colisepticemia acetate/glycolate:cation symporter reduced virulence
CKPCBMCH_00208 PHI:9228 yjcH 100 9.3e-55 1 104 1.0000 1.0000 birds avian colisepticemia conserved inner membrane protein reduced virulence
CKPCBMCH_00209 PHI:9227 acs 100 0 1 652 1.0000 1.0000 birds avian colisepticemia acetyl-coenzyme A synthetase reduced virulence
CKPCBMCH_00212 PHI:10999 nrfC 100 1.5e-134 1 223 1.0000 1.0000 rodents infection putative menaquinol-cytochrome c reductase 4Fe-4S subunit unaffected pathogenicity
CKPCBMCH_00217 PHI:124242 gltP 99.8 6.7e-232 1 437 1.0000 1.0000 rodents neonatal meningitis glutamate transporters reduced virulence
CKPCBMCH_00256 PHI:4497 PmrA 90.5 3.8e-114 1 222 1.0000 1.0000 rodents salmonellosis lipopolysaccharide modification regulator increased virulence (hypervirulence)
CKPCBMCH_00265 PHI:10047 fumB 92.9 1.8e-306 1 548 1.0000 1.0000 rodents salmonellosis fumarate hydratase class I reduced virulence
CKPCBMCH_00267 PHI:123638 DcuR 88.7 1.7e-123 1 239 1.0000 1.0000 birds pullorum disease two-component system increased virulence (hypervirulence)
CKPCBMCH_00276 PHI:11871 cadB 83.1 5.1e-211 1 443 0.9977 1.0000 primates edwardsiellosis lysine-dependent acid resistance (LDAR) system membrane protein reduced virulence
CKPCBMCH_00282 PHI:123643 dcuA 100 1.4e-229 1 433 1.0000 1.0000 rodents neonatal meningitis regulatory protein unaffected pathogenicity
CKPCBMCH_00291 PHI:6420 EF-P 98.9 4.2e-106 1 188 1.0000 1.0000 rodents salmonellosis elongation factor increased virulence (hypervirulence)
CKPCBMCH_00296 PHI:6133 blaCMY-2 75.3 1.4e-172 1 377 1.0000 0.9974 rodents salmonellosis beta-lactamase reduced virulence
CKPCBMCH_00300 PHI:2960 frdA 85 4.2e-309 1 602 1.0000 1.0000 bony fishes enteric septicemia fumarate reductase reduced virulence
CKPCBMCH_00318 PHI:2687 hfq 94.1 1.4e-47 1 102 1.0000 1.0000 rodents food poisoning regulators of systemic infection reduced virulence
CKPCBMCH_00323 PHI:2625 purA 99.5 2.6e-252 1 432 1.0000 1.0000 rodents food poisoning pathogenicity island reduced virulence
CKPCBMCH_00324 PHI:12252 nsrR 77.3 5.1e-56 1 141 1.0000 0.9456 monocots Stewart's wilt; leaf blight (maize) DNA-binding transcriptional regulator unaffected pathogenicity
CKPCBMCH_00367 PHI:7020 cpdB 99.1 0 1 647 1.0000 1.0000 birds colibacillosis 2′,3′-cyclic phosphodiesterase reduced virulence
CKPCBMCH_00446 PHI:10400 Sfgtr4 (ORF186) 95.6 2.8e-207 1 362 1.0000 1.0000 primates shigellosis putative lipopolysaccharides (LPS) glycosyltransferase (Gtr) reduced virulence
CKPCBMCH_00452 PHI:8010 fecE 100 6.2e-145 1 255 1.0000 1.0000 even-toed ungulates bovine mastitis Fe(3+) dicitrate transport ATP-binding protein reduced virulence
CKPCBMCH_00453 PHI:8009 fecD 99.7 6.7e-173 1 318 1.0000 1.0000 even-toed ungulates bovine mastitis Fe(3+) dicitrate transport system permease protein reduced virulence
CKPCBMCH_00454 PHI:8008 fecC 99.7 4.1e-181 1 332 1.0000 1.0000 even-toed ungulates bovine mastitis Fe(3+) dicitrate transport system permease protein reduced virulence
CKPCBMCH_00455 PHI:8007 fecB 99 1.6e-163 1 300 1.0000 1.0000 even-toed ungulates bovine mastitis Fe(3+) dicitrate-binding periplasmic protein reduced virulence
CKPCBMCH_00456 PHI:8006 fecA 99.5 0 1 774 1.0000 1.0000 even-toed ungulates bovine mastitis ferric citrate outer membrane transporter reduced virulence
CKPCBMCH_00457 PHI:8005 fecR 99.7 1.9e-180 1 317 1.0000 1.0000 even-toed ungulates bovine mastitis Fec operon regulator reduced virulence
CKPCBMCH_00458 PHI:8004 fecI 100 1.3e-93 1 173 1.0000 1.0000 even-toed ungulates bovine mastitis RNA polymerase sigma factor reduced virulence
CKPCBMCH_00498 PHI:7575 yjiY 96.5 0 1 716 1.0000 1.0000 rodents salmonellosis peptide-utilizing carbon starvation protein reduced virulence
CKPCBMCH_00499 PHI:6981 tsr 86.8 1.8e-253 1 554 1.0000 1.0000 primates salmonellosis methyl-accepting chemotaxis protein reduced virulence
CKPCBMCH_00543 PHI:11268 creB 84.3 3.1e-111 1 229 1.0000 1.0000 rodents infection response regulator in two-component regulatory system reduced virulence
CKPCBMCH_00546 PHI:6532 arcA 100 9.9e-137 1 238 1.0000 1.0000 birds meningitis aerobic respiration control protein reduced virulence
CKPCBMCH_00552 PHI:11408 yaaA 82.5 2.4e-120 1 257 0.9961 0.9509 rodents pneumonia alanine/glycine transport protein reduced virulence
CKPCBMCH_00556 PHI:9230 satP 100 1.6e-102 1 188 1.0000 1.0000 birds avian colisepticemia succinate-acetate/proton symporter unaffected pathogenicity
CKPCBMCH_00566 PHI:3266 nhaA 99.5 1.7e-210 1 388 1.0000 1.0000 rodents infection antiporter gene reduced virulence
CKPCBMCH_00567 PHI:3267 nhaR 99.7 9.8e-174 1 299 1.0000 0.9934 rodents infection transcriptional activator protein reduced virulence
CKPCBMCH_00579 PHI:8577 carA (Dda3937_01390) 86.8 2.1e-197 1 380 0.9948 0.9974 eudicots soft rot carbamoyl-phosphate synthase small subunit reduced virulence
CKPCBMCH_00599 PHI:10573 rsmA 79.8 1.4e-123 1 272 0.9963 1.0000 monocots soft rot ribosomal RNA small subunit methyltransferase A unaffected pathogenicity
CKPCBMCH_00602 PHI:10312 LptD 99.9 0 1 784 1.0000 1.0000 moths urinary tract infection LPS-assembly protein increased virulence (hypervirulence)
CFLJOCJI_00007 PHI:123649 yabL 100 2.5e-191 1 327 1.0000 1.0000 rodents neonatal meningitis regulatory protein unaffected pathogenicity
CFLJOCJI_00011 PHI:8965 leuD 88.1 6.5e-105 1 201 1.0000 1.0000 rodents pneumonia 3-isopropylmalate dehydratase small subunit reduced virulence
CFLJOCJI_00012 PHI:8964 leuC 97.4 3.4e-266 1 466 1.0000 1.0000 rodents pneumonia 3-isopropylmalate dehydratase large subunit reduced virulence
CFLJOCJI_00013 PHI:8862 LeuB 94.2 5.3e-198 1 363 1.0000 1.0000 rodents infection 3-isopropylmalate dehydrogenase reduced virulence
CFLJOCJI_00014 PHI:8962 leuA 92.7 9.4e-281 1 523 1.0000 1.0000 rodents pneumonia 2-isopropylmalate synthase reduced virulence
CFLJOCJI_00018 PHI:2672 fruR 98.8 2.2e-190 1 334 1.0000 1.0000 rodents food poisoning regulators of systemic infection reduced virulence
CFLJOCJI_00049 PHI:3135 pdhR 86.2 5.5e-117 1 253 0.9961 0.9961 rodents gut-associated disease; diarrhea; enteritis; colitis part of the pyruvate-tricarboxylic acid cycle node reduced virulence
CFLJOCJI_00056 PHI:9152 speD 100 2.4e-155 1 264 1.0000 1.0000 birds colibacillosis S-adenosylmethionine decarboxylase proenzyme unaffected pathogenicity
CFLJOCJI_00057 PHI:9153 speE 100 6.1e-173 1 288 1.0000 1.0000 birds colibacillosis polyamine aminopropyltransferase unaffected pathogenicity
CFLJOCJI_00059 PHI:10985 cueO 100 2.50000000000002e-310 1 516 1.0000 1.0000 rodents infection blue copper oxidase reduced virulence
CFLJOCJI_00071 PHI:6567 yadC 100 7.2e-244 1 412 1.0000 1.0000 birds colibacillosis fimbrial-like adhesin protein reduced virulence
CFLJOCJI_00081 PHI:6508 DksA 98.7 5.8e-82 1 151 1.0000 1.0000 rodents salmonellosis response regulator reduced virulence
CFLJOCJI_00088 PHI:10989 fhuD 100 4.8e-173 1 296 1.0000 1.0000 rodents infection iron(III) hydroxamate ABC transporter periplasmic binding protein unaffected pathogenicity
CFLJOCJI_00097 PHI:8690 degP (ROD_01651) 94.3 2.2e-244 1 474 1.0000 1.0000 rodents colitis periplasmic serine endoprotease DegP-like loss of pathogenicity
CFLJOCJI_00103 PHI:9334 map 89.8 1.9e-141 1 264 1.0000 1.0000 rodents colitis effector protein effector (plant avirulence determinant)
CFLJOCJI_00128 PHI:8514 nlpE 78.9 2.5e-108 2 233 0.9831 0.9957 rodents colitis outer-membrane lipoprotein unaffected pathogenicity
CFLJOCJI_00143 PHI:9313 metA 84.1 2.7e-158 1 309 1.0000 1.0000 eudicots fire blight homoserine O-succinyltransferase reduced virulence
CFLJOCJI_00155 PHI:9310 pgi 83.8 2.2e-280 1 548 0.9982 1.0000 eudicots fire blight glucose-6-phosphate isomerase reduced virulence
CFLJOCJI_00167 PHI:123650 malM 100 2e-166 1 306 1.0000 1.0000 rodents neonatal meningitis regulatory protein unaffected pathogenicity
CFLJOCJI_00182 PHI:7661 pspG 82.5 8.2e-27 1 80 1.0000 1.0000 rodents salmonellosis phage-shock protein unaffected pathogenicity
CFLJOCJI_00207 PHI:9229 actP 100 1.6e-302 1 549 1.0000 1.0000 birds avian colisepticemia acetate/glycolate:cation symporter reduced virulence
CFLJOCJI_00208 PHI:9228 yjcH 100 9.3e-55 1 104 1.0000 1.0000 birds avian colisepticemia conserved inner membrane protein reduced virulence
CFLJOCJI_00209 PHI:9227 acs 100 0 1 652 1.0000 1.0000 birds avian colisepticemia acetyl-coenzyme A synthetase reduced virulence
CFLJOCJI_00212 PHI:10999 nrfC 100 1.5e-134 1 223 1.0000 1.0000 rodents infection putative menaquinol-cytochrome c reductase 4Fe-4S subunit unaffected pathogenicity
CFLJOCJI_00217 PHI:124242 gltP 99.8 6.7e-232 1 437 1.0000 1.0000 rodents neonatal meningitis glutamate transporters reduced virulence
CFLJOCJI_00256 PHI:4497 PmrA 90.5 3.8e-114 1 222 1.0000 1.0000 rodents salmonellosis lipopolysaccharide modification regulator increased virulence (hypervirulence)
CFLJOCJI_00265 PHI:10047 fumB 92.9 1.8e-306 1 548 1.0000 1.0000 rodents salmonellosis fumarate hydratase class I reduced virulence
CFLJOCJI_00267 PHI:123638 DcuR 88.7 1.7e-123 1 239 1.0000 1.0000 birds pullorum disease two-component system increased virulence (hypervirulence)
CFLJOCJI_00276 PHI:11871 cadB 83.1 5.1e-211 1 443 0.9977 1.0000 primates edwardsiellosis lysine-dependent acid resistance (LDAR) system membrane protein reduced virulence
CFLJOCJI_00282 PHI:123643 dcuA 100 1.4e-229 1 433 1.0000 1.0000 rodents neonatal meningitis regulatory protein unaffected pathogenicity
CFLJOCJI_00291 PHI:6420 EF-P 98.9 4.2e-106 1 188 1.0000 1.0000 rodents salmonellosis elongation factor increased virulence (hypervirulence)
CFLJOCJI_00296 PHI:6133 blaCMY-2 75.3 1.4e-172 1 377 1.0000 0.9974 rodents salmonellosis beta-lactamase reduced virulence
CFLJOCJI_00300 PHI:2960 frdA 85 4.2e-309 1 602 1.0000 1.0000 bony fishes enteric septicemia fumarate reductase reduced virulence
CFLJOCJI_00318 PHI:2687 hfq 94.1 1.4e-47 1 102 1.0000 1.0000 rodents food poisoning regulators of systemic infection reduced virulence
CFLJOCJI_00323 PHI:2625 purA 99.5 2.6e-252 1 432 1.0000 1.0000 rodents food poisoning pathogenicity island reduced virulence
CFLJOCJI_00324 PHI:12252 nsrR 77.3 5.1e-56 1 141 1.0000 0.9456 monocots Stewart's wilt; leaf blight (maize) DNA-binding transcriptional regulator unaffected pathogenicity
CFLJOCJI_00367 PHI:7020 cpdB 99.1 0 1 647 1.0000 1.0000 birds colibacillosis 2′,3′-cyclic phosphodiesterase reduced virulence
CFLJOCJI_00446 PHI:10400 Sfgtr4 (ORF186) 95.6 2.8e-207 1 362 1.0000 1.0000 primates shigellosis putative lipopolysaccharides (LPS) glycosyltransferase (Gtr) reduced virulence
CFLJOCJI_00452 PHI:8010 fecE 100 6.2e-145 1 255 1.0000 1.0000 even-toed ungulates bovine mastitis Fe(3+) dicitrate transport ATP-binding protein reduced virulence
CFLJOCJI_00453 PHI:8009 fecD 99.7 6.7e-173 1 318 1.0000 1.0000 even-toed ungulates bovine mastitis Fe(3+) dicitrate transport system permease protein reduced virulence
CFLJOCJI_00454 PHI:8008 fecC 99.7 4.1e-181 1 332 1.0000 1.0000 even-toed ungulates bovine mastitis Fe(3+) dicitrate transport system permease protein reduced virulence
CFLJOCJI_00455 PHI:8007 fecB 99 1.6e-163 1 300 1.0000 1.0000 even-toed ungulates bovine mastitis Fe(3+) dicitrate-binding periplasmic protein reduced virulence
CFLJOCJI_00456 PHI:8006 fecA 99.5 0 1 774 1.0000 1.0000 even-toed ungulates bovine mastitis ferric citrate outer membrane transporter reduced virulence
CFLJOCJI_00457 PHI:8005 fecR 99.7 1.9e-180 1 317 1.0000 1.0000 even-toed ungulates bovine mastitis Fec operon regulator reduced virulence
CFLJOCJI_00458 PHI:8004 fecI 100 1.3e-93 1 173 1.0000 1.0000 even-toed ungulates bovine mastitis RNA polymerase sigma factor reduced virulence
CFLJOCJI_00498 PHI:7575 yjiY 96.5 0 1 716 1.0000 1.0000 rodents salmonellosis peptide-utilizing carbon starvation protein reduced virulence
CFLJOCJI_00499 PHI:6981 tsr 86.8 1.8e-253 1 554 1.0000 1.0000 primates salmonellosis methyl-accepting chemotaxis protein reduced virulence
CFLJOCJI_00543 PHI:11268 creB 84.3 3.1e-111 1 229 1.0000 1.0000 rodents infection response regulator in two-component regulatory system reduced virulence
CFLJOCJI_00546 PHI:6532 arcA 100 9.9e-137 1 238 1.0000 1.0000 birds meningitis aerobic respiration control protein reduced virulence
CFLJOCJI_00552 PHI:11408 yaaA 82.5 2.4e-120 1 257 0.9961 0.9509 rodents pneumonia alanine/glycine transport protein reduced virulence
CFLJOCJI_00556 PHI:9230 satP 100 1.6e-102 1 188 1.0000 1.0000 birds avian colisepticemia succinate-acetate/proton symporter unaffected pathogenicity
CFLJOCJI_00566 PHI:3266 nhaA 99.5 1.7e-210 1 388 1.0000 1.0000 rodents infection antiporter gene reduced virulence
CFLJOCJI_00567 PHI:3267 nhaR 99.7 9.8e-174 1 299 1.0000 0.9934 rodents infection transcriptional activator protein reduced virulence
CFLJOCJI_00579 PHI:8577 carA (Dda3937_01390) 86.8 2.1e-197 1 380 0.9948 0.9974 eudicots soft rot carbamoyl-phosphate synthase small subunit reduced virulence
CFLJOCJI_00599 PHI:10573 rsmA 79.8 1.4e-123 1 272 0.9963 1.0000 monocots soft rot ribosomal RNA small subunit methyltransferase A unaffected pathogenicity
CFLJOCJI_00602 PHI:10312 LptD 99.9 0 1 784 1.0000 1.0000 moths urinary tract infection LPS-assembly protein increased virulence (hypervirulence)






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
CKPCBMCH_00028 QEJ42293.1|GT28 100 5.03e-253 1 355 1 1
CKPCBMCH_00034 QFX37759.1|CE11 100 1.05e-222 1 305 1 1
CKPCBMCH_00085 APQ23079.1|GT51 100 0 1 844 1 1
CKPCBMCH_00117 QEY48735.1|GT19 100 3.56e-278 1 382 1 1
CKPCBMCH_00262 AOR18097.1|GH4 100 0 1 451 1 1
CKPCBMCH_00362 AWK41767.1|GH13_3 75.3 1.3e-241 16 464 0.9553 0.9594
CKPCBMCH_00391 ATX52101.1|GH13_29 100 0 1 551 1 1
CKPCBMCH_00446 ARW86296.1|GT4 100 2.19e-271 1 362 1 1
CKPCBMCH_00469 AZH46753.1|CE0 100 2.58e-254 1 326 1 1
CKPCBMCH_00537 AIZ54166.1|GH23 100 0 1 645 1 1
CFLJOCJI_00028 QEJ42293.1|GT28 100 5.03e-253 1 355 1 1
CFLJOCJI_00034 QFX37759.1|CE11 100 1.05e-222 1 305 1 1
CFLJOCJI_00085 APQ23079.1|GT51 100 0 1 844 1 1
CFLJOCJI_00117 QEY48735.1|GT19 100 3.56e-278 1 382 1 1
CFLJOCJI_00262 AOR18097.1|GH4 100 0 1 451 1 1
CFLJOCJI_00362 AWK41767.1|GH13_3 75.3 1.3e-241 16 464 0.9553 0.9594
CFLJOCJI_00391 ATX52101.1|GH13_29 100 0 1 551 1 1
CFLJOCJI_00446 ARW86296.1|GT4 100 2.19e-271 1 362 1 1
CFLJOCJI_00469 AZH46753.1|CE0 100 2.58e-254 1 326 1 1
CFLJOCJI_00537 AIZ54166.1|GH23 100 0 1 645 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
CKPCBMCH_00005 3.A.1.19.1 100 1e-125 1 232 1.0000 0.7095 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00006 3.A.1.19.1 100 8.1e-304 1 536 1.0000 1.6391 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00007 3.A.1.19.1 100 5.7e-191 1 327 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00010 2.A.1.20.1 99.7 7.5e-214 1 392 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CKPCBMCH_00025 9.B.146.1.6 100 1.3e-204 1 360 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.146 The Putative Undecaprenyl-phosphate N-Acetylglucosaminyl Transferase (MurG) Family
CKPCBMCH_00027 2.A.103.1.1 100 2.7e-230 1 414 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.103 The Bacterial Murein Precursor Exporter (MPE) Family
CKPCBMCH_00036 3.A.5.1.1 100 0 1 901 1.0000 4.3738 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.5 The General Secretory Pathway (Sec) Family
CKPCBMCH_00047 9.B.125.1.1 100 2.6e-160 1 284 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.125 The AmpE/CobD (AmpE/CobD) Family
CKPCBMCH_00048 2.A.3.1.3 100 1e-254 1 456 1.0000 0.9978 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
CKPCBMCH_00058 8.A.2.1.3 100 3.5e-54 1 102 1.0000 0.8870 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.2 The Secretin Auxiliary Lipoprotein (SAL) Family
CKPCBMCH_00059 1.B.76.1.8 100 5.6e-310 1 516 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.76 The Copper Resistance Putative Porin (CopB) Family
CKPCBMCH_00060 9.B.306.4.2 99.5 0 1 796 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.306 The Putative Calcium Binding Protein with Similarity to the C-termini of Anoctamins (1.A.17.5) (CBP) Family
CKPCBMCH_00063 3.A.1.105.17 100 7.2e-172 1 308 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00064 3.A.1.105.17 100 8.5e-142 1 256 1.0000 0.8312 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00075 1.B.11.3.3 99.9 0 1 865 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.11 The Outer Membrane Fimbrial Usher Porin (FUP) Family
CKPCBMCH_00086 1.B.14.1.2 99.7 0 1 747 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.14 The Outer Membrane Receptor (OMR) Family
CKPCBMCH_00087 3.A.1.14.3 100 9.4e-152 1 265 1.0000 0.8953 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00088 3.A.1.14.3 100 1.1e-172 1 296 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00089 3.A.1.14.3 99.5 0 1 660 1.0000 2.2297 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00091 2.A.49.5.1 99.8 4.4e-261 1 473 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.49 The Chloride Carrier/Channel (ClC) Family
CKPCBMCH_00093 1.A.62.2.2 86.7 9.7e-96 1 203 0.9807 0.9951 1 Channels/Pores 1.A α-Type Channels 1.A.62 The Homotrimeric Cation Channel (TRIC) Family
CKPCBMCH_00094 3.A.1.13.1 81.2 2e-122 1 266 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00111 9.B.149.2.3 100 2.3e-259 1 450 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.149 The M50 Peptidase (M50-P) Family
CKPCBMCH_00112 1.B.33.1.3 100 0 1 810 1.0000 2.0663 1 Channels/Pores 1.B β-Barrel Porins 1.B.33 The Outer Membrane Protein Insertion Porin (Bam Complex) (OmpIP) Family
CKPCBMCH_00133 3.A.1.24.1 100 2.1e-151 1 271 1.0000 1.2488 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00134 3.A.1.24.1 100 1.7e-111 1 217 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00135 3.A.1.24.1 100 2.2e-193 1 343 1.0000 1.5806 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00150 2.A.58.2.1 100 9.8e-289 1 543 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.58 The Phosphate:Na+ Symporter (PNaS) Family
CKPCBMCH_00159 1.B.14.16.4 99.9 0 1 698 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.14 The Outer Membrane Receptor (OMR) Family
CKPCBMCH_00161 2.A.1.1.3 100 4e-281 1 491 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CKPCBMCH_00162 3.A.1.1.1 100 1.7e-162 1 296 1.0000 0.7978 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00163 3.A.1.1.1 100 1.3e-298 1 514 1.0000 1.3854 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00164 3.A.1.1.1 100 5.2e-231 1 396 1.0000 1.0674 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00165 3.A.1.1.1 100 6.6e-212 1 371 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00166 1.B.3.1.1 100 6.8e-272 1 446 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.3 The Sugar Porin (SP) Family
CKPCBMCH_00176 2.A.66.1.4 100 2.9e-238 1 441 1.0000 0.9608 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.66 The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily
CKPCBMCH_00204 2.A.40.7.5 100 6.5e-238 1 449 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.40 The Nucleobase/Ascorbate Transporter (NAT) or Nucleobase:Cation Symporter-2 (NCS2) Family
CKPCBMCH_00205 2.A.36.3.1 99.8 1.7e-296 1 549 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.36 The Monovalent Cation:Proton Antiporter-1 (CPA1) Family
CKPCBMCH_00207 2.A.21.7.2 100 3.5e-302 1 549 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
CKPCBMCH_00208 9.B.136.1.1 100 2.1e-54 1 104 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.136 The 2 TMS Membrane Protein, YjcH (YjcH) Family
CKPCBMCH_00210 5.A.3.5.3 100 9.2e-291 1 478 1.0000 1.5031 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family
CKPCBMCH_00212 5.A.3.5.3 100 3.3e-134 1 223 1.0000 0.7013 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family
CKPCBMCH_00213 5.A.3.5.3 100 3.6e-174 1 318 1.0000 1.0000 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family
CKPCBMCH_00217 2.A.23.1.1 99.8 1.5e-231 1 437 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.23 The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family
CKPCBMCH_00219 3.D.1.9.2 100 0 1 559 1.0000 2.1922 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.1 The H+ or Na+-translocating NADH Dehydrogenase (NDH) Family
CKPCBMCH_00221 1.B.17.3.9 100 1.8e-270 1 488 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.17 The Outer Membrane Factor (OMF) Family
CKPCBMCH_00222 2.A.85.6.1 99.9 0 1 683 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.85 The Aromatic Acid Exporter (ArAE) Family
CKPCBMCH_00223 8.A.1.1.3 99.7 9.2e-184 1 343 1.0000 1.0000 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.1 The Membrane Fusion Protein (MFP) Family
CKPCBMCH_00228 3.A.1.2.6 100 1.8e-173 1 326 1.0000 1.0482 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00229 3.A.1.2.6 100 3.3e-294 1 510 1.0000 1.6399 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00230 3.A.1.2.6 99.7 1.5e-169 1 311 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00246 3.A.1.9.1 100 3.4e-191 1 338 1.0000 1.3050 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00247 3.A.1.9.1 100 3.4e-146 1 262 1.0000 1.0116 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00253 2.A.1.6.4 100 6.9e-281 1 500 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CKPCBMCH_00258 2.A.3.2.5 100 6.2e-249 1 445 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
CKPCBMCH_00263 2.A.2.1.1 99.8 1.1e-261 1 469 1.0000 0.9915 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.2 The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family
CKPCBMCH_00266 2.A.13.1.2 100 2.4e-245 1 446 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.13 The C<sub>4</sub>-Dicarboxylate Uptake (Dcu) Family
CKPCBMCH_00272 1.C.130.1.2 100 4.7e-24 1 57 1.0000 1.0000 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.130 The Membrane Potential-dissipating Orphan 10 Toxin, (OrtT) Family
CKPCBMCH_00274 2.A.17.1.5 100 1e-273 1 485 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.17 The Proton-dependent Oligopeptide Transporter (POT/PTR) Family
CKPCBMCH_00276 2.A.3.2.2 100 1.4e-248 1 444 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
CKPCBMCH_00280 5.A.1.1.1 100 0 1 565 1.0000 1.0000 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.1 The Disulfide Bond Oxidoreductase D (DsbD) Family
CKPCBMCH_00282 2.A.13.1.1 100 3.1e-229 1 433 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.13 The C<sub>4</sub>-Dicarboxylate Uptake (Dcu) Family
CKPCBMCH_00285 2.A.3.13.1 99.5 1.1e-234 1 418 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
CKPCBMCH_00293 9.B.13.1.1 100 1.9e-18 1 48 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.13 The Putative Pore-forming Entericidin (ECN) Family
CKPCBMCH_00294 2.A.7.1.4 100 9.1e-50 1 105 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.7 The Drug/Metabolite Transporter (DMT) Superfamily
CKPCBMCH_00296 8.A.212.1.4 70.7 3.1e-164 1 376 0.9973 0.9974 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.212 The d-Amino Acid Peptidase (dAAP) Family
CKPCBMCH_00302 2.A.3.7.5 99.4 1.1e-281 1 500 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
CKPCBMCH_00304 9.B.444.1.2 100 6.2e-56 1 100 1.0000 0.9615 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.444 The Uncharacterized YjeO/YgiZ (YjeO/YgiZ) Family
CKPCBMCH_00305 1.A.23.1.3 100 0 1 1107 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.23 The Small Conductance Mechanosensitive Ion Channel (MscS) Family
CKPCBMCH_00318 9.B.468.1.1 100 5.2e-50 1 102 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.468 The Hfq RNA Chaparone Protein (Hfq) Family
CKPCBMCH_00337 9.B.358.1.4 99.2 2.1e-67 1 132 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.358 The DUF350 domain-containing (DUF350) Family
CKPCBMCH_00346 4.A.7.1.1 98.7 1.7e-218 1 393 1.0000 3.8911 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.7 The PTS L-Ascorbate (L-Asc) Family
CKPCBMCH_00347 4.A.7.1.1 99 5.5e-52 1 101 1.0000 1.0000 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.7 The PTS L-Ascorbate (L-Asc) Family
CKPCBMCH_00348 4.A.7.1.1 97.4 5.9e-82 1 154 1.0000 1.5248 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.7 The PTS L-Ascorbate (L-Asc) Family
CKPCBMCH_00362 2.A.3.1.7 100 3e-262 1 470 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
CKPCBMCH_00364 2.A.7.3.19 98.8 3.1e-181 1 321 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.7 The Drug/Metabolite Transporter (DMT) Superfamily
CKPCBMCH_00372 1.A.112.2.11 100 1.6e-249 1 447 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.112 The Cyclin M Mg2+ Exporter (CNNM) Family
CKPCBMCH_00374 1.B.33.2.4 99.8 0 1 577 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.33 The Outer Membrane Protein Insertion Porin (Bam Complex) (OmpIP) Family
CKPCBMCH_00375 9.B.121.6.2 99.4 0 1 1259 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.121 The AsmA (AsmA) Family
CKPCBMCH_00381 3.A.1.2.25 98.8 5.8e-280 1 500 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00392 4.A.1.2.4 99.6 9.2e-267 1 473 1.0000 1.0000 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.1 The PTS Glucose-Glucoside (Glc) Family
CKPCBMCH_00394 3.A.3.4.1 90.2 0 3 898 0.9978 0.9933 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.3 The P-type ATPase (P-ATPase) Superfamily
CKPCBMCH_00452 3.A.1.14.1 100 1.4e-144 1 255 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00453 3.A.1.14.1 99.7 1.5e-172 1 318 1.0000 1.2471 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00454 3.A.1.14.1 99.7 9.2e-181 1 332 1.0000 1.3020 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00455 3.A.1.14.1 99 3.5e-163 1 300 1.0000 1.1765 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CKPCBMCH_00456 1.B.14.1.20 99.5 0 1 774 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.14 The Outer Membrane Receptor (OMR) Family
CKPCBMCH_00471 1.B.35.2.1 100 1.4e-143 1 238 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.35 The Oligogalacturonate-specific Porin (KdgM) Family
CKPCBMCH_00474 2.A.8.1.3 100 1.3e-235 1 447 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.8 The Gluconate:H+ Symporter (GntP) Family
CKPCBMCH_00483 9.B.156.1.1 98.7 1e-78 1 153 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.156 The Putative 4-10 TMS Permease (4-10P) Family
CKPCBMCH_00484 9.A.5.4.2 100 2.5e-121 1 227 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.A Recognized transporters of unknown biochemical mechanism 9.A.5 The Putative Arginine Transporter (ArgW) Family
CKPCBMCH_00486 2.A.1.51.2 90.4 4.9e-189 1 387 0.9872 0.9872 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CKPCBMCH_00492 2.A.1.2.52 97.1 2.5e-220 1 410 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CKPCBMCH_00498 2.A.114.1.10 96.5 0 1 716 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.114 The Putative Peptide Transporter Carbon Starvation CstA (CstA) Family
CKPCBMCH_00500 2.A.1.14.33 99.3 3.9e-259 1 453 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CKPCBMCH_00508 2.A.79.2.1 99.2 2.2e-142 1 256 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.79 The Threonine/Serine Exporter (ThrE) Family
CKPCBMCH_00519 8.A.213.1.2 100 1.4e-99 1 201 1.0000 1.0000 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.213 The Bon Domain-containing Protein (Bon DP) Family
CKPCBMCH_00534 4.B.1.1.1 94.9 1.5e-233 1 410 1.0000 1.7155 4 Group Translocators 4.B Nicotinamide ribonucleoside uptake transporters 4.B.1 The Nicotinamide Ribonucleoside (NR) Uptake Permease (PnuC) Family
CKPCBMCH_00553 2.A.25.1.10 99.4 7.5e-269 1 476 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.25 The Alanine or Glycine:Cation Symporter (AGCS) Family
CKPCBMCH_00556 2.A.96.1.1 100 3.7e-102 1 188 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.96 The Acetate Uptake Transporter (AceTr) Family
CKPCBMCH_00559 1.A.33.1.2 100 0 1 638 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.33 The Cation Channel-forming Heat Shock Protein-70 (Hsp70) Family
CKPCBMCH_00563 1.E.53.1.1 100 2.9e-20 20 69 0.7246 1.0000 1 Channels/Pores 1.E Holins 1.E.53 The Toxic Hok/Gef Protein (Hok/Gef) Family
CKPCBMCH_00566 2.A.33.1.1 99.5 3.8e-210 1 388 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.33 The NhaA Na+:H+ Antiporter (NhaA) Family
CKPCBMCH_00585 4.C.1.1.6 97 3.7e-298 1 506 1.0000 0.9787 4 Group Translocators 4.C Acyl CoA ligase-coupled transporters 4.C.1 The Fatty Acid Group Translocation (FAT) Family
CKPCBMCH_00588 2.A.15.2.1 100 7.4e-299 1 504 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.15 The Betaine/Carnitine/Choline Transporter (BCCT) Family
CKPCBMCH_00593 2.A.1.1.114 100 6.4e-254 1 443 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CKPCBMCH_00594 2.A.37.1.1 100 1.2e-107 1 176 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.37 The Monovalent Cation:Proton Antiporter-2 (CPA2) Family
CKPCBMCH_00595 2.A.37.1.1 100 0 1 620 1.0000 3.5227 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.37 The Monovalent Cation:Proton Antiporter-2 (CPA2) Family
CKPCBMCH_00602 1.B.42.1.2 99.9 0 1 784 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.42 The Outer Membrane Lipopolysaccharide Export Porin (LPS-EP) Family
CFLJOCJI_00005 3.A.1.19.1 100 1e-125 1 232 1.0000 0.7095 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00006 3.A.1.19.1 100 8.1e-304 1 536 1.0000 1.6391 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00007 3.A.1.19.1 100 5.7e-191 1 327 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00010 2.A.1.20.1 99.7 7.5e-214 1 392 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CFLJOCJI_00025 9.B.146.1.6 100 1.3e-204 1 360 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.146 The Putative Undecaprenyl-phosphate N-Acetylglucosaminyl Transferase (MurG) Family
CFLJOCJI_00027 2.A.103.1.1 100 2.7e-230 1 414 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.103 The Bacterial Murein Precursor Exporter (MPE) Family
CFLJOCJI_00036 3.A.5.1.1 100 0 1 901 1.0000 4.3738 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.5 The General Secretory Pathway (Sec) Family
CFLJOCJI_00047 9.B.125.1.1 100 2.6e-160 1 284 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.125 The AmpE/CobD (AmpE/CobD) Family
CFLJOCJI_00048 2.A.3.1.3 100 1e-254 1 456 1.0000 0.9978 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
CFLJOCJI_00058 8.A.2.1.3 100 3.5e-54 1 102 1.0000 0.8870 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.2 The Secretin Auxiliary Lipoprotein (SAL) Family
CFLJOCJI_00059 1.B.76.1.8 100 5.6e-310 1 516 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.76 The Copper Resistance Putative Porin (CopB) Family
CFLJOCJI_00060 9.B.306.4.2 99.5 0 1 796 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.306 The Putative Calcium Binding Protein with Similarity to the C-termini of Anoctamins (1.A.17.5) (CBP) Family
CFLJOCJI_00063 3.A.1.105.17 100 7.2e-172 1 308 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00064 3.A.1.105.17 100 8.5e-142 1 256 1.0000 0.8312 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00075 1.B.11.3.3 99.9 0 1 865 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.11 The Outer Membrane Fimbrial Usher Porin (FUP) Family
CFLJOCJI_00086 1.B.14.1.2 99.7 0 1 747 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.14 The Outer Membrane Receptor (OMR) Family
CFLJOCJI_00087 3.A.1.14.3 100 9.4e-152 1 265 1.0000 0.8953 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00088 3.A.1.14.3 100 1.1e-172 1 296 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00089 3.A.1.14.3 99.5 0 1 660 1.0000 2.2297 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00091 2.A.49.5.1 99.8 4.4e-261 1 473 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.49 The Chloride Carrier/Channel (ClC) Family
CFLJOCJI_00093 1.A.62.2.2 86.7 9.7e-96 1 203 0.9807 0.9951 1 Channels/Pores 1.A α-Type Channels 1.A.62 The Homotrimeric Cation Channel (TRIC) Family
CFLJOCJI_00094 3.A.1.13.1 81.2 2e-122 1 266 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00111 9.B.149.2.3 100 2.3e-259 1 450 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.149 The M50 Peptidase (M50-P) Family
CFLJOCJI_00112 1.B.33.1.3 100 0 1 810 1.0000 2.0663 1 Channels/Pores 1.B β-Barrel Porins 1.B.33 The Outer Membrane Protein Insertion Porin (Bam Complex) (OmpIP) Family
CFLJOCJI_00133 3.A.1.24.1 100 2.1e-151 1 271 1.0000 1.2488 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00134 3.A.1.24.1 100 1.7e-111 1 217 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00135 3.A.1.24.1 100 2.2e-193 1 343 1.0000 1.5806 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00150 2.A.58.2.1 100 9.8e-289 1 543 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.58 The Phosphate:Na+ Symporter (PNaS) Family
CFLJOCJI_00159 1.B.14.16.4 99.9 0 1 698 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.14 The Outer Membrane Receptor (OMR) Family
CFLJOCJI_00161 2.A.1.1.3 100 4e-281 1 491 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CFLJOCJI_00162 3.A.1.1.1 100 1.7e-162 1 296 1.0000 0.7978 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00163 3.A.1.1.1 100 1.3e-298 1 514 1.0000 1.3854 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00164 3.A.1.1.1 100 5.2e-231 1 396 1.0000 1.0674 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00165 3.A.1.1.1 100 6.6e-212 1 371 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00166 1.B.3.1.1 100 6.8e-272 1 446 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.3 The Sugar Porin (SP) Family
CFLJOCJI_00176 2.A.66.1.4 100 2.9e-238 1 441 1.0000 0.9608 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.66 The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily
CFLJOCJI_00204 2.A.40.7.5 100 6.5e-238 1 449 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.40 The Nucleobase/Ascorbate Transporter (NAT) or Nucleobase:Cation Symporter-2 (NCS2) Family
CFLJOCJI_00205 2.A.36.3.1 99.8 1.7e-296 1 549 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.36 The Monovalent Cation:Proton Antiporter-1 (CPA1) Family
CFLJOCJI_00207 2.A.21.7.2 100 3.5e-302 1 549 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
CFLJOCJI_00208 9.B.136.1.1 100 2.1e-54 1 104 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.136 The 2 TMS Membrane Protein, YjcH (YjcH) Family
CFLJOCJI_00210 5.A.3.5.3 100 9.2e-291 1 478 1.0000 1.5031 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family
CFLJOCJI_00212 5.A.3.5.3 100 3.3e-134 1 223 1.0000 0.7013 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family
CFLJOCJI_00213 5.A.3.5.3 100 3.6e-174 1 318 1.0000 1.0000 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family
CFLJOCJI_00217 2.A.23.1.1 99.8 1.5e-231 1 437 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.23 The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family
CFLJOCJI_00219 3.D.1.9.2 100 0 1 559 1.0000 2.1922 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.1 The H+ or Na+-translocating NADH Dehydrogenase (NDH) Family
CFLJOCJI_00221 1.B.17.3.9 100 1.8e-270 1 488 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.17 The Outer Membrane Factor (OMF) Family
CFLJOCJI_00222 2.A.85.6.1 99.9 0 1 683 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.85 The Aromatic Acid Exporter (ArAE) Family
CFLJOCJI_00223 8.A.1.1.3 99.7 9.2e-184 1 343 1.0000 1.0000 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.1 The Membrane Fusion Protein (MFP) Family
CFLJOCJI_00228 3.A.1.2.6 100 1.8e-173 1 326 1.0000 1.0482 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00229 3.A.1.2.6 100 3.3e-294 1 510 1.0000 1.6399 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00230 3.A.1.2.6 99.7 1.5e-169 1 311 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00246 3.A.1.9.1 100 3.4e-191 1 338 1.0000 1.3050 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00247 3.A.1.9.1 100 3.4e-146 1 262 1.0000 1.0116 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00253 2.A.1.6.4 100 6.9e-281 1 500 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CFLJOCJI_00258 2.A.3.2.5 100 6.2e-249 1 445 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
CFLJOCJI_00263 2.A.2.1.1 99.8 1.1e-261 1 469 1.0000 0.9915 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.2 The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family
CFLJOCJI_00266 2.A.13.1.2 100 2.4e-245 1 446 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.13 The C<sub>4</sub>-Dicarboxylate Uptake (Dcu) Family
CFLJOCJI_00272 1.C.130.1.2 100 4.7e-24 1 57 1.0000 1.0000 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.130 The Membrane Potential-dissipating Orphan 10 Toxin, (OrtT) Family
CFLJOCJI_00274 2.A.17.1.5 100 1e-273 1 485 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.17 The Proton-dependent Oligopeptide Transporter (POT/PTR) Family
CFLJOCJI_00276 2.A.3.2.2 100 1.4e-248 1 444 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
CFLJOCJI_00280 5.A.1.1.1 100 0 1 565 1.0000 1.0000 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.1 The Disulfide Bond Oxidoreductase D (DsbD) Family
CFLJOCJI_00282 2.A.13.1.1 100 3.1e-229 1 433 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.13 The C<sub>4</sub>-Dicarboxylate Uptake (Dcu) Family
CFLJOCJI_00285 2.A.3.13.1 99.5 1.1e-234 1 418 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
CFLJOCJI_00293 9.B.13.1.1 100 1.9e-18 1 48 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.13 The Putative Pore-forming Entericidin (ECN) Family
CFLJOCJI_00294 2.A.7.1.4 100 9.1e-50 1 105 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.7 The Drug/Metabolite Transporter (DMT) Superfamily
CFLJOCJI_00296 8.A.212.1.4 70.7 3.1e-164 1 376 0.9973 0.9974 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.212 The d-Amino Acid Peptidase (dAAP) Family
CFLJOCJI_00302 2.A.3.7.5 99.4 1.1e-281 1 500 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
CFLJOCJI_00304 9.B.444.1.2 100 6.2e-56 1 100 1.0000 0.9615 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.444 The Uncharacterized YjeO/YgiZ (YjeO/YgiZ) Family
CFLJOCJI_00305 1.A.23.1.3 100 0 1 1107 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.23 The Small Conductance Mechanosensitive Ion Channel (MscS) Family
CFLJOCJI_00318 9.B.468.1.1 100 5.2e-50 1 102 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.468 The Hfq RNA Chaparone Protein (Hfq) Family
CFLJOCJI_00337 9.B.358.1.4 99.2 2.1e-67 1 132 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.358 The DUF350 domain-containing (DUF350) Family
CFLJOCJI_00346 4.A.7.1.1 98.7 1.7e-218 1 393 1.0000 3.8911 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.7 The PTS L-Ascorbate (L-Asc) Family
CFLJOCJI_00347 4.A.7.1.1 99 5.5e-52 1 101 1.0000 1.0000 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.7 The PTS L-Ascorbate (L-Asc) Family
CFLJOCJI_00348 4.A.7.1.1 97.4 5.9e-82 1 154 1.0000 1.5248 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.7 The PTS L-Ascorbate (L-Asc) Family
CFLJOCJI_00362 2.A.3.1.7 100 3e-262 1 470 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
CFLJOCJI_00364 2.A.7.3.19 98.8 3.1e-181 1 321 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.7 The Drug/Metabolite Transporter (DMT) Superfamily
CFLJOCJI_00372 1.A.112.2.11 100 1.6e-249 1 447 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.112 The Cyclin M Mg2+ Exporter (CNNM) Family
CFLJOCJI_00374 1.B.33.2.4 99.8 0 1 577 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.33 The Outer Membrane Protein Insertion Porin (Bam Complex) (OmpIP) Family
CFLJOCJI_00375 9.B.121.6.2 99.4 0 1 1259 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.121 The AsmA (AsmA) Family
CFLJOCJI_00381 3.A.1.2.25 98.8 5.8e-280 1 500 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00392 4.A.1.2.4 99.6 9.2e-267 1 473 1.0000 1.0000 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.1 The PTS Glucose-Glucoside (Glc) Family
CFLJOCJI_00394 3.A.3.4.1 90.2 0 3 898 0.9978 0.9933 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.3 The P-type ATPase (P-ATPase) Superfamily
CFLJOCJI_00452 3.A.1.14.1 100 1.4e-144 1 255 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00453 3.A.1.14.1 99.7 1.5e-172 1 318 1.0000 1.2471 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00454 3.A.1.14.1 99.7 9.2e-181 1 332 1.0000 1.3020 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00455 3.A.1.14.1 99 3.5e-163 1 300 1.0000 1.1765 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CFLJOCJI_00456 1.B.14.1.20 99.5 0 1 774 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.14 The Outer Membrane Receptor (OMR) Family
CFLJOCJI_00471 1.B.35.2.1 100 1.4e-143 1 238 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.35 The Oligogalacturonate-specific Porin (KdgM) Family
CFLJOCJI_00474 2.A.8.1.3 100 1.3e-235 1 447 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.8 The Gluconate:H+ Symporter (GntP) Family
CFLJOCJI_00483 9.B.156.1.1 98.7 1e-78 1 153 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.156 The Putative 4-10 TMS Permease (4-10P) Family
CFLJOCJI_00484 9.A.5.4.2 100 2.5e-121 1 227 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.A Recognized transporters of unknown biochemical mechanism 9.A.5 The Putative Arginine Transporter (ArgW) Family
CFLJOCJI_00486 2.A.1.51.2 90.4 4.9e-189 1 387 0.9872 0.9872 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CFLJOCJI_00492 2.A.1.2.52 97.1 2.5e-220 1 410 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CFLJOCJI_00498 2.A.114.1.10 96.5 0 1 716 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.114 The Putative Peptide Transporter Carbon Starvation CstA (CstA) Family
CFLJOCJI_00500 2.A.1.14.33 99.3 3.9e-259 1 453 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CFLJOCJI_00508 2.A.79.2.1 99.2 2.2e-142 1 256 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.79 The Threonine/Serine Exporter (ThrE) Family
CFLJOCJI_00519 8.A.213.1.2 100 1.4e-99 1 201 1.0000 1.0000 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.213 The Bon Domain-containing Protein (Bon DP) Family
CFLJOCJI_00534 4.B.1.1.1 94.9 1.5e-233 1 410 1.0000 1.7155 4 Group Translocators 4.B Nicotinamide ribonucleoside uptake transporters 4.B.1 The Nicotinamide Ribonucleoside (NR) Uptake Permease (PnuC) Family
CFLJOCJI_00553 2.A.25.1.10 99.4 7.5e-269 1 476 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.25 The Alanine or Glycine:Cation Symporter (AGCS) Family
CFLJOCJI_00556 2.A.96.1.1 100 3.7e-102 1 188 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.96 The Acetate Uptake Transporter (AceTr) Family
CFLJOCJI_00559 1.A.33.1.2 100 0 1 638 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.33 The Cation Channel-forming Heat Shock Protein-70 (Hsp70) Family
CFLJOCJI_00563 1.E.53.1.1 100 2.9e-20 20 69 0.7246 1.0000 1 Channels/Pores 1.E Holins 1.E.53 The Toxic Hok/Gef Protein (Hok/Gef) Family
CFLJOCJI_00566 2.A.33.1.1 99.5 3.8e-210 1 388 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.33 The NhaA Na+:H+ Antiporter (NhaA) Family
CFLJOCJI_00585 4.C.1.1.6 97 3.7e-298 1 506 1.0000 0.9787 4 Group Translocators 4.C Acyl CoA ligase-coupled transporters 4.C.1 The Fatty Acid Group Translocation (FAT) Family
CFLJOCJI_00588 2.A.15.2.1 100 7.4e-299 1 504 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.15 The Betaine/Carnitine/Choline Transporter (BCCT) Family
CFLJOCJI_00593 2.A.1.1.114 100 6.4e-254 1 443 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CFLJOCJI_00594 2.A.37.1.1 100 1.2e-107 1 176 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.37 The Monovalent Cation:Proton Antiporter-2 (CPA2) Family
CFLJOCJI_00595 2.A.37.1.1 100 0 1 620 1.0000 3.5227 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.37 The Monovalent Cation:Proton Antiporter-2 (CPA2) Family
CFLJOCJI_00602 1.B.42.1.2 99.9 0 1 784 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.42 The Outer Membrane Lipopolysaccharide Export Porin (LPS-EP) Family