Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C65
  Reference Plasmid   CP025879.1
  Reference Plasmid Size   36127
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0143360 FDBCCHOP_00001 250 4 Gut 0.80 protein_coding missense_variant MODERATE 208C>A Gln70Lys
M0143361 FDBCCHOP_00001 336 4 Gut 0.80 protein_coding synonymous_variant LOW 294T>A Arg98Arg
M0143362 FDBCCHOP_00001 348 4 Gut 0.80 protein_coding synonymous_variant LOW 306G>T Ala102Ala
M0143363 FDBCCHOP_00002 472 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -6A>G None
M0143364 FDBCCHOP_00002 603 4 Gut 0.80 protein_coding synonymous_variant LOW 126C>T Asn42Asn
M0143365 FDBCCHOP_00002 612 4 Gut 0.80 protein_coding synonymous_variant LOW 135C>T Asn45Asn
M0143366 FDBCCHOP_00002 661 4 Gut 0.80 protein_coding missense_variant MODERATE 184G>A Val62Ile
M0143367 FDBCCHOP_00002 702 4 Gut 0.80 protein_coding synonymous_variant LOW 225G>A Arg75Arg
M0143368 FDBCCHOP_00002 870 4 Gut 0.80 protein_coding synonymous_variant LOW 393C>A Gly131Gly
M0143369 FDBCCHOP_00002 1095 4 Gut 0.80 protein_coding synonymous_variant LOW 618T>C Phe206Phe
M0143370 FDBCCHOP_00002 1182 4 Gut 0.80 protein_coding synonymous_variant LOW 705C>T Asp235Asp
M0143371 FDBCCHOP_00002 1209 4 Gut 0.80 protein_coding synonymous_variant LOW 732T>C Ala244Ala
M0143372 FDBCCHOP_00002 1329 4 Gut 0.80 protein_coding synonymous_variant LOW 852A>T Gly284Gly
M0143373 FDBCCHOP_00002 1365 4 Gut 0.80 protein_coding synonymous_variant LOW 888T>C Arg296Arg
M0143374 FDBCCHOP_00002 1383 4 Gut 0.80 protein_coding synonymous_variant LOW 906A>G Arg302Arg
M0143375 FDBCCHOP_00002 1440 4 Gut 0.80 protein_coding synonymous_variant LOW 963C>T Ala321Ala
M0143376 FDBCCHOP_00002 1698 4 Gut 0.80 protein_coding missense_variant MODERATE 1221G>T Lys407Asn
M0143377 FDBCCHOP_00003 1758 4 Gut 0.80 protein_coding synonymous_variant LOW 15G>A Leu5Leu
M0143378 FDBCCHOP_00003 1759 4 Gut 0.80 protein_coding missense_variant MODERATE 16T>G Phe6Val
M0143379 FDBCCHOP_00003 1766 4 Gut 0.80 protein_coding missense_variant MODERATE 23G>C Gly8Ala
M0143380 FDBCCHOP_00003 1767 4 Gut 0.80 protein_coding synonymous_variant LOW 24A>G Gly8Gly
M0143381 FDBCCHOP_00003 1768 4 Gut 0.80 protein_coding missense_variant MODERATE 25T>C Phe9Leu
M0143382 FDBCCHOP_00003 1770 4 Gut 0.80 protein_coding missense_variant MODERATE 27T>G Phe9Leu
M0143383 FDBCCHOP_00003 1779 4 Gut 0.80 protein_coding synonymous_variant LOW 36G>A Lys12Lys
M0143384 FDBCCHOP_00003 1803 4 Gut 0.80 protein_coding synonymous_variant LOW 60C>T Phe20Phe
M0143385 FDBCCHOP_00003 1807 4 Gut 0.80 protein_coding missense_variant MODERATE 64A>G Ile22Val
M0143386 FDBCCHOP_00003 1816 4 Gut 0.80 protein_coding missense_variant MODERATE 73A>G Asn25Asp
M0143387 FDBCCHOP_00003 1832 4 Gut 0.80 protein_coding missense_variant MODERATE 89A>C Gln30Pro
M0143388 FDBCCHOP_00003 1865 4 Gut 0.80 protein_coding missense_variant MODERATE 122C>T Ala41Val
M0143389 FDBCCHOP_00003 1884 4 Gut 0.80 protein_coding synonymous_variant LOW 141T>C Cys47Cys
M0143390 FDBCCHOP_00003 1897 4 Gut 0.80 protein_coding synonymous_variant LOW 154C>T Leu52Leu
M0143391 FDBCCHOP_00003 1905 4 Gut 0.80 protein_coding synonymous_variant LOW 162C>T Asn54Asn
M0143392 FDBCCHOP_00003 1914 4 Gut 0.80 protein_coding synonymous_variant LOW 171A>T Val57Val
M0143393 FDBCCHOP_00003 1923 4 Gut 0.80 protein_coding synonymous_variant LOW 180T>A Ser60Ser
M0143394 FDBCCHOP_00003 1977 4 Gut 0.80 protein_coding missense_variant MODERATE 234G>T Glu78Asp
M0143395 FDBCCHOP_00003 1980 4 Gut 0.80 protein_coding synonymous_variant LOW 237C>T Asp79Asp
M0143396 FDBCCHOP_00003 2025 4 Gut 0.80 protein_coding synonymous_variant LOW 282A>C Thr94Thr
M0143397 FDBCCHOP_00003 2032 4 Gut 0.80 protein_coding missense_variant MODERATE 289A>T Met97Leu
M0143398 FDBCCHOP_00003 2040 4 Gut 0.80 protein_coding synonymous_variant LOW 297A>G Ser99Ser
M0143399 FDBCCHOP_00003 2070 4 Gut 0.80 protein_coding synonymous_variant LOW 327A>C Ala109Ala
M0143400 FDBCCHOP_00003 2073 4 Gut 0.80 protein_coding synonymous_variant LOW 330G>A Ala110Ala
M0143401 FDBCCHOP_00003 2094 4 Gut 0.80 protein_coding synonymous_variant LOW 351C>T Cys117Cys
M0143402 FDBCCHOP_00003 2097 4 Gut 0.80 protein_coding synonymous_variant LOW 354T>C Ile118Ile
M0143403 FDBCCHOP_00003 2115 4 Gut 0.80 protein_coding synonymous_variant LOW 372G>A Ser124Ser
M0143404 FDBCCHOP_00003 2130 4 Gut 0.80 protein_coding synonymous_variant LOW 387C>T Ala129Ala
M0143405 FDBCCHOP_00003 2166 4 Gut 0.80 protein_coding synonymous_variant LOW 423T>C Ile141Ile
M0143406 FDBCCHOP_00003 2172 4 Gut 0.80 protein_coding synonymous_variant LOW 429T>G Thr143Thr
M0143407 FDBCCHOP_00003 2193 4 Gut 0.80 protein_coding synonymous_variant LOW 450G>A Gly150Gly
M0143408 FDBCCHOP_00003 2202 4 Gut 0.80 protein_coding synonymous_variant LOW 459T>C Ala153Ala
M0143409 FDBCCHOP_00003 2217 4 Gut 0.80 protein_coding synonymous_variant LOW 474A>G Glu158Glu
M0143410 FDBCCHOP_00003 2232 4 Gut 0.80 protein_coding missense_variant MODERATE 489T>A His163Gln
M0143411 FDBCCHOP_00003 2235 4 Gut 0.80 protein_coding synonymous_variant LOW 492A>T Pro164Pro
M0143412 FDBCCHOP_00003 2277 4 Gut 0.80 protein_coding synonymous_variant LOW 534T>C Arg178Arg
M0143413 FDBCCHOP_00003 2283 4 Gut 0.80 protein_coding synonymous_variant LOW 540C>T Ile180Ile
M0143414 FDBCCHOP_00003 2295 4 Gut 0.80 protein_coding missense_variant MODERATE 552A>C Lys184Asn
M0143415 FDBCCHOP_00004 2467 4 Gut 0.80 protein_coding synonymous_variant LOW 144A>G Gln48Gln
M0143416 FDBCCHOP_00004 2561 4 Gut 0.80 protein_coding missense_variant MODERATE 238G>T Ala80Ser
M0143417 FDBCCHOP_00004 2590 4 Gut 0.80 protein_coding synonymous_variant LOW 267A>G Glu89Glu
M0143418 FDBCCHOP_00004 2686 4 Gut 0.80 protein_coding synonymous_variant LOW 363C>A Gly121Gly
M0143419 FDBCCHOP_00004 2749 4 Gut 0.80 protein_coding synonymous_variant LOW 426G>A Ala142Ala
M0143420 FDBCCHOP_00004 2818 4 Gut 0.80 protein_coding synonymous_variant LOW 495C>T Ala165Ala
M0143421 FDBCCHOP_00004 2833 4 Gut 0.80 protein_coding synonymous_variant LOW 510A>C Gly170Gly
M0143422 FDBCCHOP_00004 2863 4 Gut 0.80 protein_coding synonymous_variant LOW 540T>G Pro180Pro
M0143423 FDBCCHOP_00004 2887 4 Gut 0.80 protein_coding synonymous_variant LOW 564C>T Gly188Gly
M0143424 FDBCCHOP_00004 2917 4 Gut 0.80 protein_coding synonymous_variant LOW 594C>A Pro198Pro
M0143425 FDBCCHOP_00004 2995 4 Gut 0.80 protein_coding synonymous_variant LOW 672T>C Val224Val
M0143426 FDBCCHOP_00004 3017 4 Gut 0.80 protein_coding missense_variant MODERATE 694C>A Leu232Ile
M0143427 FDBCCHOP_00004 3034 4 Gut 0.80 protein_coding synonymous_variant LOW 711A>G Lys237Lys
M0143428 FDBCCHOP_00004 3040 4 Gut 0.80 protein_coding synonymous_variant LOW 717T>G Gly239Gly
M0143429 FDBCCHOP_00004 3079 4 Gut 0.80 protein_coding synonymous_variant LOW 756G>A Lys252Lys
M0143430 FDBCCHOP_00004 3136 4 Gut 0.80 protein_coding synonymous_variant LOW 813A>G Ala271Ala
M0143431 FDBCCHOP_00004 3166 4 Gut 0.80 protein_coding synonymous_variant LOW 843G>A Ala281Ala
M0143432 FDBCCHOP_00004 3211 4 Gut 0.80 protein_coding synonymous_variant LOW 888G>A Lys296Lys
M0143433 FDBCCHOP_00004 3238 4 Gut 0.80 protein_coding synonymous_variant LOW 915G>A Thr305Thr
M0143434 FDBCCHOP_00004 3257 4 Gut 0.80 protein_coding synonymous_variant LOW 934C>T Leu312Leu
M0143435 FDBCCHOP_00004 3262 4 Gut 0.80 protein_coding synonymous_variant LOW 939C>T Arg313Arg
M0143436 FDBCCHOP_00004 3277 4 Gut 0.80 protein_coding synonymous_variant LOW 954A>G Ala318Ala
M0143437 FDBCCHOP_00004 3318 4 Gut 0.80 protein_coding missense_variant MODERATE 995C>A Ala332Glu
M0143438 FDBCCHOP_00004 3442 4 Gut 0.80 protein_coding synonymous_variant LOW 1119G>A Ala373Ala
M0143439 FDBCCHOP_00004 3454 4 Gut 0.80 protein_coding synonymous_variant LOW 1131A>C Thr377Thr
M0143440 FDBCCHOP_00004 3600 4 Gut 0.80 protein_coding missense_variant MODERATE 1277G>A Cys426Tyr
M0143441 FDBCCHOP_00004 3736 4 Gut 0.80 protein_coding synonymous_variant LOW 1413G>T Leu471Leu
M0143442 FDBCCHOP_00004 3754 4 Gut 0.80 protein_coding synonymous_variant LOW 1431T>C Val477Val
M0143443 FDBCCHOP_00004 3784 4 Gut 0.80 protein_coding synonymous_variant LOW 1461G>A Pro487Pro
M0143444 FDBCCHOP_00004 3790 4 Gut 0.80 protein_coding synonymous_variant LOW 1467C>T Phe489Phe
M0143445 FDBCCHOP_00004 3823 4 Gut 0.80 protein_coding synonymous_variant LOW 1500T>C Arg500Arg
M0143446 FDBCCHOP_00004 3844 4 Gut 0.80 protein_coding synonymous_variant LOW 1521T>C Asp507Asp
M0143447 FDBCCHOP_00004 3856 4 Gut 0.80 protein_coding synonymous_variant LOW 1533A>G Lys511Lys
M0143448 FDBCCHOP_00004 3863 4 Gut 0.80 protein_coding synonymous_variant LOW 1540T>C Leu514Leu
M0143449 FDBCCHOP_00004 3868 4 Gut 0.80 protein_coding synonymous_variant LOW 1545G>A Lys515Lys
M0143450 FDBCCHOP_00004 3901 4 Gut 0.80 protein_coding synonymous_variant LOW 1578C>T Gly526Gly
M0143451 FDBCCHOP_00004 3904 4 Gut 0.80 protein_coding synonymous_variant LOW 1581T>C Gly527Gly
M0143452 FDBCCHOP_00004 3922 4 Gut 0.80 protein_coding synonymous_variant LOW 1599A>C Thr533Thr
M0143453 FDBCCHOP_00004 3925 4 Gut 0.80 protein_coding synonymous_variant LOW 1602T>C Arg534Arg
M0143454 FDBCCHOP_00004 3928 4 Gut 0.80 protein_coding synonymous_variant LOW 1605T>A Ala535Ala
M0143455 FDBCCHOP_00004 3943 4 Gut 0.80 protein_coding synonymous_variant LOW 1620G>A Thr540Thr
M0143456 FDBCCHOP_00004 3952 4 Gut 0.80 protein_coding synonymous_variant LOW 1629G>A Lys543Lys
M0143457 FDBCCHOP_00004 3970 4 Gut 0.80 protein_coding synonymous_variant LOW 1647C>G Leu549Leu
M0143458 FDBCCHOP_00004 4076 4 Gut 0.80 protein_coding missense_variant MODERATE 1753G>A Ala585Thr
M0143459 FDBCCHOP_00004 4078 4 Gut 0.80 protein_coding synonymous_variant LOW 1755T>A Ala585Ala
M0143460 FDBCCHOP_00004 4084 4 Gut 0.80 protein_coding synonymous_variant LOW 1761A>T Ile587Ile
M0143461 FDBCCHOP_00004 4096 4 Gut 0.80 protein_coding synonymous_variant LOW 1773T>C Asp591Asp
M0143462 FDBCCHOP_00004 4109 4 Gut 0.80 protein_coding missense_variant MODERATE 1786C>G Gln596Glu
M0143463 FDBCCHOP_00004 4171 4 Gut 0.80 protein_coding missense_variant MODERATE 1848C>G Asp616Glu
M0143464 FDBCCHOP_00004 4189 4 Gut 0.80 protein_coding synonymous_variant LOW 1866A>T Ala622Ala
M0143465 FDBCCHOP_00004 4250 4 Gut 0.80 protein_coding missense_variant MODERATE 1927A>G Ile643Val
M0143466 FDBCCHOP_00004 4311 4 Gut 0.80 protein_coding missense_variant MODERATE 1988C>T Ser663Phe
M0143467 FDBCCHOP_00004 4325 4 Gut 0.80 protein_coding missense_variant MODERATE 2002C>A Pro668Thr
M0143468 FDBCCHOP_00004 4453 4 Gut 0.80 protein_coding synonymous_variant LOW 2130G>T Gly710Gly
M0143469 FDBCCHOP_00005 4507 4 Gut 0.80 protein_coding synonymous_variant LOW 34C>A Arg12Arg
M0143470 FDBCCHOP_00005 4563 4 Gut 0.80 protein_coding synonymous_variant LOW 90G>A Lys30Lys
M0143471 FDBCCHOP_00005 4581 4 Gut 0.80 protein_coding synonymous_variant LOW 108C>A Ser36Ser
M0143472 FDBCCHOP_00005 4626 4 Gut 0.80 protein_coding synonymous_variant LOW 153T>G Val51Val
M0143473 FDBCCHOP_00005 4650 4 Gut 0.80 protein_coding synonymous_variant LOW 177G>T Val59Val
M0143474 FDBCCHOP_00006 4784 4 Gut 0.80 protein_coding synonymous_variant LOW 87G>A Glu29Glu
M0143475 FDBCCHOP_00006 4785 4 Gut 0.80 protein_coding missense_variant MODERATE 88A>G Ile30Val
M0143476 FDBCCHOP_00010 5532 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -3173T>G None
M0143477 FDBCCHOP_00010 5545 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -3160T>C None
M0143478 FDBCCHOP_00008 5689 4 Gut 0.80 protein_coding missense_variant MODERATE 1286A>T Asn429Ile
M0143479 FDBCCHOP_00008 5733 4 Gut 0.80 protein_coding synonymous_variant LOW 1242G>A Thr414Thr
M0143480 FDBCCHOP_00008 5744 4 Gut 0.80 protein_coding missense_variant MODERATE 1231T>C Tyr411His
M0143481 FDBCCHOP_00008 5748 4 Gut 0.80 protein_coding synonymous_variant LOW 1227G>A Gly409Gly
M0143482 FDBCCHOP_00008 6117 4 Gut 0.80 protein_coding synonymous_variant LOW 858T>C His286His
M0143483 FDBCCHOP_00008 6552 4 Gut 0.80 protein_coding missense_variant MODERATE 423A>G Ile141Met
M0143484 FDBCCHOP_00009 7219 4 Gut 0.80 protein_coding synonymous_variant LOW 724C>A Arg242Arg
M0143485 FDBCCHOP_00009 7247 4 Gut 0.80 protein_coding synonymous_variant LOW 696A>C Leu232Leu
M0143486 FDBCCHOP_00009 7388 4 Gut 0.80 protein_coding synonymous_variant LOW 555G>A Leu185Leu
M0143487 FDBCCHOP_00008 9193 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -2219G>C None
M0143488 FDBCCHOP_00008 10128 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -3154G>A None
M0143489 FDBCCHOP_00008 10159 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -3185G>A None
M0143490 FDBCCHOP_00008 10171 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -3197C>T None
M0143491 FDBCCHOP_00008 10177 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -3203A>G None
M0143492 FDBCCHOP_00008 10197 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -3223T>C None
M0143493 FDBCCHOP_00008 10216 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -3242T>C None
M0143494 FDBCCHOP_00012 10649 4 Gut 0.80 protein_coding synonymous_variant LOW 411G>A Leu137Leu
M0143495 FDBCCHOP_00012 10661 4 Gut 0.80 protein_coding synonymous_variant LOW 423G>T Val141Val
M0143496 FDBCCHOP_00012 10899 4 Gut 0.80 protein_coding stop_lost&splice_region_variant HIGH 661T>C Ter221Glnext*?
M0143497 FDBCCHOP_00008 11366 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4392C>T None
M0143498 FDBCCHOP_00015 11785 4 Gut 0.80 protein_coding missense_variant MODERATE 66A>C Arg22Ser
M0143499 FDBCCHOP_00015 11802 4 Gut 0.80 protein_coding missense_variant MODERATE 83G>A Arg28Gln
M0143500 FDBCCHOP_00015 11815 4 Gut 0.80 protein_coding synonymous_variant LOW 96A>G Glu32Glu
M0143501 FDBCCHOP_00015 11860 4 Gut 0.80 protein_coding synonymous_variant LOW 141A>G Ala47Ala
M0143502 FDBCCHOP_00015 12112 4 Gut 0.80 protein_coding synonymous_variant LOW 393T>C Tyr131Tyr
M0143503 FDBCCHOP_00009 12354 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4412T>C None
M0143504 FDBCCHOP_00017 12974 4 Gut 0.80 protein_coding synonymous_variant LOW 334T>C Leu112Leu
M0143505 FDBCCHOP_00011 14211 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4353G>A None
M0143506 FDBCCHOP_00011 14262 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4404C>T None
M0143507 FDBCCHOP_00011 14354 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4496A>C None
M0143508 FDBCCHOP_00011 14487 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4629A>G None
M0143509 FDBCCHOP_00011 14524 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4666T>C None
M0143510 FDBCCHOP_00011 14533 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4675T>G None
M0143511 FDBCCHOP_00011 14688 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4830T>C None
M0143512 FDBCCHOP_00011 14774 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4916A>G None
M0143513 FDBCCHOP_00016 15029 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -2305T>C None
M0143514 FDBCCHOP_00016 15110 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -2386A>G None
M0143515 FDBCCHOP_00022 16452 4 Gut 0.80 protein_coding synonymous_variant LOW 168T>C Leu56Leu
M0143516 FDBCCHOP_00022 16505 4 Gut 0.80 protein_coding missense_variant MODERATE 221T>C Ile74Thr
M0143517 FDBCCHOP_00024 16922 4 Gut 0.80 protein_coding synonymous_variant LOW 96A>G Gln32Gln
M0143518 FDBCCHOP_00024 17079 4 Gut 0.80 protein_coding missense_variant MODERATE 253A>G Thr85Ala
M0143519 FDBCCHOP_00025 17281 4 Gut 0.80 protein_coding missense_variant MODERATE 83T>G Ile28Arg
M0143520 FDBCCHOP_00017 18158 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4851T>G None
M0143521 FDBCCHOP_00017 18165 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4858C>T None
M0143522 FDBCCHOP_00017 18174 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4867T>C None
M0143523 FDBCCHOP_00030 19786 4 Gut 0.80 protein_coding synonymous_variant LOW 1032C>T Ser344Ser
M0143524 FDBCCHOP_00028 19922 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -1860C>A None
M0143525 FDBCCHOP_00028 20007 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -1945A>G None
M0143526 FDBCCHOP_00028 20058 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -1996A>C None
M0143527 FDBCCHOP_00028 20069 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -2007G>A None
M0143528 FDBCCHOP_00028 20085 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -2023A>G None
M0143529 FDBCCHOP_00028 20086 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -2024C>T None
M0143530 FDBCCHOP_00028 20087 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -2025T>C None
M0143531 FDBCCHOP_00028 20095 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -2033T>C None
M0143532 FDBCCHOP_00028 20156 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -2094G>A None
M0143533 FDBCCHOP_00028 20490 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -2428G>A None
M0143534 FDBCCHOP_00032 21460 4 Gut 0.80 protein_coding missense_variant MODERATE 494T>A Ile165Lys
M0143535 FDBCCHOP_00034 22420 4 Gut 0.80 protein_coding missense_variant MODERATE 514G>T Ala172Ser
M0143536 FDBCCHOP_00034 23964 4 Gut 0.80 protein_coding synonymous_variant LOW 2058G>A Gly686Gly
M0143537 FDBCCHOP_00034 24085 4 Gut 0.80 protein_coding synonymous_variant LOW 2179T>C Leu727Leu
M0143538 FDBCCHOP_00034 24447 4 Gut 0.80 protein_coding synonymous_variant LOW 2541C>T Ser847Ser
M0143539 FDBCCHOP_00035 25051 4 Gut 0.80 protein_coding synonymous_variant LOW 381T>C Cys127Cys
M0143540 FDBCCHOP_00036 25441 4 Gut 0.80 protein_coding synonymous_variant LOW 12A>C Ile4Ile
M0143541 FDBCCHOP_00038 27006 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -95C>T None
M0143542 FDBCCHOP_00038 27289 4 Gut 0.80 protein_coding synonymous_variant LOW 189A>G Thr63Thr
M0143543 FDBCCHOP_00039 27926 4 Gut 0.80 protein_coding synonymous_variant LOW 108A>C Ile36Ile
M0143544 FDBCCHOP_00039 28340 4 Gut 0.80 protein_coding missense_variant MODERATE 522T>G Asn174Lys
M0143545 FDBCCHOP_00040 29209 4 Gut 0.80 protein_coding synonymous_variant LOW 465G>A Gln155Gln
M0143546 FDBCCHOP_00040 29392 4 Gut 0.80 protein_coding synonymous_variant LOW 648T>C Pro216Pro
M0143547 FDBCCHOP_00040 29659 4 Gut 0.80 protein_coding synonymous_variant LOW 915T>A Ser305Ser
M0143548 FDBCCHOP_00041 29951 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -1G>T None
M0143549 FDBCCHOP_00041 30326 4 Gut 0.80 protein_coding synonymous_variant LOW 375A>C Gly125Gly
M0143550 FDBCCHOP_00042 31420 4 Gut 0.80 protein_coding synonymous_variant LOW 435T>C Gly145Gly
M0143551 FDBCCHOP_00042 32089 4 Gut 0.80 protein_coding synonymous_variant LOW 1104G>A Arg368Arg
M0143552 FDBCCHOP_00042 32219 4 Gut 0.80 protein_coding synonymous_variant LOW 1234C>T Leu412Leu
M0143553 FDBCCHOP_00042 32290 4 Gut 0.80 protein_coding synonymous_variant LOW 1305A>C Gly435Gly
M0143554 FDBCCHOP_00042 32713 4 Gut 0.80 protein_coding synonymous_variant LOW 1728A>G Thr576Thr
M0143555 FDBCCHOP_00043 33079 4 Gut 0.80 protein_coding missense_variant MODERATE 262G>A Ala88Thr
M0143556 FDBCCHOP_00045 34036 4 Gut 0.80 protein_coding stop_lost&splice_region_variant HIGH 406T>C Ter136Glnext*?
M0143557 FDBCCHOP_00046 34173 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -307T>C None
M0143558 FDBCCHOP_00046 34480 4 Gut 0.80 protein_coding initiator_codon_variant&non_canonical_start_codon LOW 1T>C Leu1?
M0143559 FDBCCHOP_00046 34503 4 Gut 0.80 protein_coding synonymous_variant LOW 24C>A Ala8Ala
M0143560 FDBCCHOP_00046 34584 4 Gut 0.80 protein_coding synonymous_variant LOW 105C>T Tyr35Tyr
M0143561 FDBCCHOP_00046 34608 4 Gut 0.80 protein_coding synonymous_variant LOW 129G>A Gln43Gln
M0143562 FDBCCHOP_00046 34631 4 Gut 0.80 protein_coding missense_variant MODERATE 152T>A Leu51Gln
M0143563 FDBCCHOP_00046 34680 4 Gut 0.80 protein_coding synonymous_variant LOW 201A>G Gln67Gln
M0143564 FDBCCHOP_00046 34690 4 Gut 0.80 protein_coding synonymous_variant LOW 211A>C Arg71Arg
M0143565 FDBCCHOP_00046 34734 4 Gut 0.80 protein_coding synonymous_variant LOW 255T>C Arg85Arg
M0143566 FDBCCHOP_00046 34878 4 Gut 0.80 protein_coding synonymous_variant LOW 399T>C Asn133Asn
M0143567 FDBCCHOP_00046 34896 4 Gut 0.80 protein_coding synonymous_variant LOW 417C>T Asn139Asn
M0143568 FDBCCHOP_00046 34926 4 Gut 0.80 protein_coding synonymous_variant LOW 447T>A Val149Val
M0143569 FDBCCHOP_00047 34961 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -28C>T None
M0143570 FDBCCHOP_00047 34972 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -17C>T None
M0143571 FDBCCHOP_00047 34985 4 Gut 0.80 protein_coding upstream_gene_variant MODIFIER -4A>G None
M0143572 FDBCCHOP_00047 35094 4 Gut 0.80 protein_coding synonymous_variant LOW 106C>A Arg36Arg
M0143573 FDBCCHOP_00047 35156 4 Gut 0.80 protein_coding synonymous_variant LOW 168A>G Leu56Leu
M0143574 FDBCCHOP_00047 35177 4 Gut 0.80 protein_coding synonymous_variant LOW 189A>T Pro63Pro
M0143575 FDBCCHOP_00047 35180 4 Gut 0.80 protein_coding synonymous_variant LOW 192T>C Ala64Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FDBCCHOP_00032 AWH59259.1|GH23 99.5 2.16e-152 1 215 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term