Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C79
  Reference Plasmid   CP034714.1
  Reference Plasmid Size   126510
  Reference Plasmid GC Content   0.51
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0143720 DCJCNGDG_00102 77036 3 Gut 1.00 protein_coding synonymous_variant LOW 357A>G Val119Val
M0143721 DCJCNGDG_00103 79301 3 Gut 1.00 protein_coding synonymous_variant LOW 1260C>A Ile420Ile
M0143722 DCJCNGDG_00106 81043 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -42A>T None
M0143723 DCJCNGDG_00106 81096 3 Gut 1.00 protein_coding synonymous_variant LOW 12T>A Leu4Leu
M0143724 DCJCNGDG_00106 81613 3 Gut 1.00 protein_coding missense_variant MODERATE 529A>C Asn177His
M0143725 DCJCNGDG_00109 83189 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -40G>A None
M0143726 DCJCNGDG_00109 83360 3 Gut 1.00 protein_coding synonymous_variant LOW 132G>A Val44Val
M0143727 DCJCNGDG_00117 87732 3 Gut 1.00 protein_coding missense_variant MODERATE 1443T>G Asn481Lys
M0143728 DCJCNGDG_00117 87840 3 Gut 1.00 protein_coding synonymous_variant LOW 1551T>C Gly517Gly
M0143729 DCJCNGDG_00119 88441 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -39G>T None
M0143730 DCJCNGDG_00119 88442 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -38A>T None
M0143731 DCJCNGDG_00119 88443 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -37G>A None
M0143732 DCJCNGDG_00119 88545 3 Gut 1.00 protein_coding synonymous_variant LOW 66A>G Pro22Pro
M0143733 DCJCNGDG_00121 89777 3 Gut 1.00 protein_coding missense_variant MODERATE 38C>T Pro13Leu
M0143734 DCJCNGDG_00121 92011 3 Gut 1.00 protein_coding missense_variant MODERATE 2272T>G Ser758Ala
M0143735 DCJCNGDG_00122 92446 3 Gut 1.00 protein_coding synonymous_variant LOW 51G>A Gln17Gln
M0143736 DCJCNGDG_00123 92805 3 Gut 1.00 protein_coding synonymous_variant LOW 135G>A Leu45Leu
M0143737 DCJCNGDG_00125 93998 3 Gut 1.00 protein_coding synonymous_variant LOW 378C>A Thr126Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
DCJCNGDG_00085 PHI:11406 dsbC 92.3 1e-125 1 235 1.0000 1.0000 rodents pneumonia thiol:disulfide interchange protein reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
DCJCNGDG_00152 AIO10552.2|GH23 95 1.24e-226 9 346 0.9769 1
DCJCNGDG_00154 AIO10245.2|GH23 96.3 0 1 1201 1 1
DCJCNGDG_00157 ASM79752.1|GH23 100 1.3e-123 1 177 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term