Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C109
  Reference Plasmid   CP057502.1
  Reference Plasmid Size   68491
  Reference Plasmid GC Content   0.44
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0144206 FEFFDEGL_00006 7602 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -2801A>G None
M0144207 FEFFDEGL_00006 7614 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -2813G>A None
M0144208 FEFFDEGL_00006 7650 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -2849T>A None
M0144209 FEFFDEGL_00006 7673 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -2872G>C None
M0144210 FEFFDEGL_00006 7707 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -2906A>G None
M0144211 FEFFDEGL_00006 7726 6 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2925T>C None
M0144212 FEFFDEGL_00006 7762 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -2961G>A None
M0144213 FEFFDEGL_00006 7775 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -2974C>A None
M0144214 FEFFDEGL_00006 7874 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -3073C>G None
M0144215 FEFFDEGL_00010 7995 6 Gut 1.00 protein_coding synonymous_variant LOW 108T>C Val36Val
M0144216 FEFFDEGL_00010 8007 5 Gut 0.83 protein_coding synonymous_variant LOW 120G>A Leu40Leu
M0144217 FEFFDEGL_00010 8253 5 Gut 0.83 protein_coding missense_variant MODERATE 366C>G His122Gln
M0144218 FEFFDEGL_00010 8266 5 Gut 0.83 protein_coding synonymous_variant LOW 379C>A Arg127Arg
M0144219 FEFFDEGL_00010 8319 5 Gut 0.83 protein_coding synonymous_variant LOW 432G>A Leu144Leu
M0144220 FEFFDEGL_00011 8388 5 Gut 0.83 protein_coding missense_variant MODERATE 22G>A Gly8Arg
M0144221 FEFFDEGL_00011 8480 5 Gut 0.83 protein_coding synonymous_variant LOW 114G>A Arg38Arg
M0144222 FEFFDEGL_00011 8527 5 Gut 0.83 protein_coding missense_variant MODERATE 161C>T Ser54Phe
M0144223 FEFFDEGL_00011 8822 5 Gut 0.83 protein_coding synonymous_variant LOW 456A>G Gly152Gly
M0144224 FEFFDEGL_00011 9160 5 Gut 0.83 protein_coding missense_variant MODERATE 794G>C Ser265Thr
M0144225 FEFFDEGL_00011 9216 5 Gut 0.83 protein_coding missense_variant MODERATE 850T>A Cys284Ser
M0144226 FEFFDEGL_00011 9269 5 Gut 0.83 protein_coding synonymous_variant LOW 903T>C Gly301Gly
M0144227 FEFFDEGL_00011 9371 5 Gut 0.83 protein_coding synonymous_variant LOW 1005C>T Asp335Asp
M0144228 FEFFDEGL_00011 9463 5 Gut 0.83 protein_coding missense_variant MODERATE 1097T>C Val366Ala
M0144229 FEFFDEGL_00012 9889 5 Gut 0.83 protein_coding missense_variant MODERATE 35T>C Val12Ala
M0144230 FEFFDEGL_00012 9937 5 Gut 0.83 protein_coding missense_variant MODERATE 83C>A Thr28Lys
M0144231 FEFFDEGL_00012 9977 5 Gut 0.83 protein_coding missense_variant MODERATE 123G>T Glu41Asp
M0144232 FEFFDEGL_00012 9990 4 Gut 0.67 protein_coding missense_variant MODERATE 136T>G Tyr46Asp
M0144233 FEFFDEGL_00012 10019 5 Gut 0.83 protein_coding synonymous_variant LOW 165A>T Ala55Ala
M0144234 FEFFDEGL_00012 10041 5 Gut 0.83 protein_coding missense_variant MODERATE 187A>G Asn63Asp
M0144235 FEFFDEGL_00012 10051 5 Gut 0.83 protein_coding missense_variant MODERATE 197C>G Thr66Ser
M0144236 FEFFDEGL_00012 10057 5 Gut 0.83 protein_coding missense_variant MODERATE 203A>G Lys68Arg
M0144237 FEFFDEGL_00012 10080 5 Gut 0.83 protein_coding missense_variant MODERATE 226A>C Lys76Gln
M0144238 FEFFDEGL_00012 10115 5 Gut 0.83 protein_coding synonymous_variant LOW 261G>A Gly87Gly
M0144239 FEFFDEGL_00012 10124 5 Gut 0.83 protein_coding synonymous_variant LOW 270T>C Ile90Ile
M0144240 FEFFDEGL_00012 10139 5 Gut 0.83 protein_coding synonymous_variant LOW 285G>C Val95Val
M0144241 FEFFDEGL_00012 10141 5 Gut 0.83 protein_coding missense_variant MODERATE 287G>A Arg96His
M0144242 FEFFDEGL_00012 10149 5 Gut 0.83 protein_coding missense_variant MODERATE 295G>T Ala99Ser
M0144243 FEFFDEGL_00012 10151 5 Gut 0.83 protein_coding synonymous_variant LOW 297C>T Ala99Ala
M0144244 FEFFDEGL_00012 10153 5 Gut 0.83 protein_coding missense_variant MODERATE 299C>A Thr100Asn
M0144245 FEFFDEGL_00012 10204 5 Gut 0.83 protein_coding missense_variant MODERATE 350G>T Arg117Leu
M0144246 FEFFDEGL_00012 10206 5 Gut 0.83 protein_coding missense_variant MODERATE 352G>C Val118Leu
M0144247 FEFFDEGL_00012 10214 5 Gut 0.83 protein_coding missense_variant MODERATE 360G>T Glu120Asp
M0144248 FEFFDEGL_00012 10224 5 Gut 0.83 protein_coding missense_variant MODERATE 370G>A Ala124Thr
M0144249 FEFFDEGL_00012 10231 5 Gut 0.83 protein_coding missense_variant MODERATE 377A>G Asp126Gly
M0144250 FEFFDEGL_00012 10237 5 Gut 0.83 protein_coding missense_variant MODERATE 383C>A Ala128Asp
M0144251 FEFFDEGL_00012 10251 5 Gut 0.83 protein_coding missense_variant MODERATE 397G>C Val133Leu
M0144252 FEFFDEGL_00012 10269 5 Gut 0.83 protein_coding missense_variant MODERATE 415C>G Pro139Ala
M0144253 FEFFDEGL_00012 10273 5 Gut 0.83 protein_coding missense_variant MODERATE 419A>G Gln140Arg
M0144254 FEFFDEGL_00012 10287 5 Gut 0.83 protein_coding missense_variant MODERATE 433A>C Ile145Leu
M0144255 FEFFDEGL_00012 10307 5 Gut 0.83 protein_coding synonymous_variant LOW 453T>C Ser151Ser
M0144256 FEFFDEGL_00013 10429 5 Gut 0.83 protein_coding synonymous_variant LOW 45A>G Ser15Ser
M0144257 FEFFDEGL_00013 10498 5 Gut 0.83 protein_coding synonymous_variant LOW 114A>C Ser38Ser
M0144258 FEFFDEGL_00013 10596 6 Gut 1.00 protein_coding missense_variant MODERATE 212A>G Glu71Gly
M0144259 FEFFDEGL_00013 10597 5 Gut 0.83 protein_coding synonymous_variant LOW 213G>A Glu71Glu
M0144260 FEFFDEGL_00013 10602 5 Gut 0.83 protein_coding missense_variant MODERATE 218G>A Ser73Asn
M0144261 FEFFDEGL_00013 10639 6 Gut 1.00 protein_coding synonymous_variant LOW 255A>G Leu85Leu
M0144262 FEFFDEGL_00013 10746 6 Gut 1.00 protein_coding missense_variant MODERATE 362G>A Ser121Asn
M0144263 FEFFDEGL_00013 10794 5 Gut 0.83 protein_coding missense_variant MODERATE 410C>T Ser137Leu
M0144264 FEFFDEGL_00014 10811 5 Gut 0.83 protein_coding synonymous_variant LOW 12G>A Leu4Leu
M0144265 FEFFDEGL_00014 10982 5 Gut 0.83 protein_coding synonymous_variant LOW 183G>A Gln61Gln
M0144266 FEFFDEGL_00014 11155 6 Gut 1.00 protein_coding missense_variant MODERATE 356C>A Pro119His
M0144267 FEFFDEGL_00014 11281 5 Gut 0.83 protein_coding missense_variant MODERATE 482A>C Asp161Ala
M0144268 FEFFDEGL_00014 11328 5 Gut 0.83 protein_coding missense_variant MODERATE 529C>A Leu177Ile
M0144269 FEFFDEGL_00014 11396 5 Gut 0.83 protein_coding synonymous_variant LOW 597G>A Val199Val
M0144270 FEFFDEGL_00014 11400 6 Gut 1.00 protein_coding missense_variant MODERATE 601A>C Lys201Gln
M0144271 FEFFDEGL_00014 11568 6 Gut 1.00 protein_coding missense_variant MODERATE 769A>G Asn257Asp
M0144272 FEFFDEGL_00014 11587 6 Gut 1.00 protein_coding missense_variant MODERATE 788A>G Tyr263Cys
M0144273 FEFFDEGL_00014 11635 5 Gut 0.83 protein_coding missense_variant MODERATE 836G>T Gly279Val
M0144274 FEFFDEGL_00014 11649 6 Gut 1.00 protein_coding missense_variant MODERATE 850A>G Asn284Asp
M0144275 FEFFDEGL_00014 11678 5 Gut 0.83 protein_coding synonymous_variant LOW 879A>G Glu293Glu
M0144276 FEFFDEGL_00014 11801 6 Gut 1.00 protein_coding synonymous_variant LOW 1002A>C Val334Val
M0144277 FEFFDEGL_00014 11863 5 Gut 0.83 protein_coding missense_variant MODERATE 1064T>A Phe355Tyr
M0144278 FEFFDEGL_00014 11979 5 Gut 0.83 protein_coding missense_variant MODERATE 1180G>A Val394Ile
M0144279 FEFFDEGL_00014 12136 5 Gut 0.83 protein_coding missense_variant MODERATE 1337A>G His446Arg
M0144280 FEFFDEGL_00014 12200 5 Gut 0.83 protein_coding missense_variant MODERATE 1401G>A Met467Ile
M0144281 FEFFDEGL_00014 12212 6 Gut 1.00 protein_coding synonymous_variant LOW 1413C>T Ile471Ile
M0144282 FEFFDEGL_00014 12255 6 Gut 1.00 protein_coding missense_variant MODERATE 1456A>G Asn486Asp
M0144283 FEFFDEGL_00015 12757 5 Gut 0.83 protein_coding missense_variant MODERATE 165G>C Glu55Asp
M0144284 FEFFDEGL_00015 12835 6 Gut 1.00 protein_coding synonymous_variant LOW 243G>T Leu81Leu
M0144285 FEFFDEGL_00015 12999 6 Gut 1.00 protein_coding missense_variant MODERATE 407C>T Ala136Val
M0144286 FEFFDEGL_00015 13143 5 Gut 0.83 protein_coding missense_variant MODERATE 551G>C Ser184Thr
M0144287 FEFFDEGL_00015 13164 5 Gut 0.83 protein_coding missense_variant MODERATE 572G>A Arg191His
M0144288 FEFFDEGL_00016 13678 5 Gut 0.83 protein_coding synonymous_variant LOW 141A>T Pro47Pro
M0144289 FEFFDEGL_00016 13783 6 Gut 1.00 protein_coding synonymous_variant LOW 246A>G Arg82Arg
M0144290 FEFFDEGL_00016 13825 5 Gut 0.83 protein_coding synonymous_variant LOW 288T>C Pro96Pro
M0144291 FEFFDEGL_00016 13879 5 Gut 0.83 protein_coding missense_variant MODERATE 342C>A Ser114Arg
M0144292 FEFFDEGL_00016 13947 5 Gut 0.83 protein_coding missense_variant MODERATE 410G>A Arg137Lys
M0144293 FEFFDEGL_00016 13986 6 Gut 1.00 protein_coding missense_variant MODERATE 449A>C Lys150Thr
M0144294 FEFFDEGL_00016 13987 5 Gut 0.83 protein_coding synonymous_variant LOW 450A>G Lys150Lys
M0144295 FEFFDEGL_00016 14113 5 Gut 0.83 protein_coding synonymous_variant LOW 576G>A Ala192Ala
M0144296 FEFFDEGL_00016 14466 5 Gut 0.83 protein_coding missense_variant MODERATE 929G>C Ser310Thr
M0144297 FEFFDEGL_00016 14477 5 Gut 0.83 protein_coding missense_variant MODERATE 940C>T Leu314Phe
M0144298 FEFFDEGL_00016 14592 5 Gut 0.83 protein_coding missense_variant MODERATE 1055A>G His352Arg
M0144299 FEFFDEGL_00016 14593 5 Gut 0.83 protein_coding synonymous_variant LOW 1056C>T His352His
M0144300 FEFFDEGL_00016 14602 5 Gut 0.83 protein_coding synonymous_variant LOW 1065C>T Ile355Ile
M0144301 FEFFDEGL_00016 14638 5 Gut 0.83 protein_coding synonymous_variant LOW 1101T>A Ala367Ala
M0144302 FEFFDEGL_00016 14686 5 Gut 0.83 protein_coding synonymous_variant LOW 1149T>A Ile383Ile
M0144303 FEFFDEGL_00016 14893 5 Gut 0.83 protein_coding synonymous_variant LOW 1356G>T Leu452Leu
M0144304 FEFFDEGL_00016 15108 5 Gut 0.83 protein_coding missense_variant MODERATE 1571G>T Cys524Phe
M0144305 FEFFDEGL_00016 15133 5 Gut 0.83 protein_coding missense_variant MODERATE 1596G>A Met532Ile
M0144306 FEFFDEGL_00016 15146 6 Gut 1.00 protein_coding missense_variant MODERATE 1609C>A His537Asn
M0144307 FEFFDEGL_00016 15171 5 Gut 0.83 protein_coding missense_variant MODERATE 1634C>G Ala545Gly
M0144308 FEFFDEGL_00016 15172 5 Gut 0.83 protein_coding synonymous_variant LOW 1635C>T Ala545Ala
M0144309 FEFFDEGL_00016 15208 5 Gut 0.83 protein_coding synonymous_variant LOW 1671C>T Asp557Asp
M0144310 FEFFDEGL_00016 15237 6 Gut 1.00 protein_coding missense_variant MODERATE 1700G>A Ser567Asn
M0144311 FEFFDEGL_00016 15401 5 Gut 0.83 protein_coding missense_variant MODERATE 1864T>G Ser622Ala
M0144312 FEFFDEGL_00016 15472 5 Gut 0.83 protein_coding synonymous_variant LOW 1935G>T Thr645Thr
M0144313 FEFFDEGL_00016 15493 5 Gut 0.83 protein_coding synonymous_variant LOW 1956G>T Ala652Ala
M0144314 FEFFDEGL_00016 15514 5 Gut 0.83 protein_coding synonymous_variant LOW 1977C>T Thr659Thr
M0144315 FEFFDEGL_00017 15606 5 Gut 0.83 protein_coding missense_variant MODERATE 19C>T His7Tyr
M0144316 FEFFDEGL_00017 15631 6 Gut 1.00 protein_coding missense_variant MODERATE 44T>C Met15Thr
M0144317 FEFFDEGL_00017 15649 5 Gut 0.83 protein_coding missense_variant MODERATE 62C>T Ala21Val
M0144318 FEFFDEGL_00017 15762 5 Gut 0.83 protein_coding missense_variant MODERATE 175G>C Val59Leu
M0144319 FEFFDEGL_00017 15793 5 Gut 0.83 protein_coding missense_variant MODERATE 206A>G Glu69Gly
M0144320 FEFFDEGL_00017 15858 5 Gut 0.83 protein_coding missense_variant MODERATE 271A>G Thr91Ala
M0144321 FEFFDEGL_00017 16003 5 Gut 0.83 protein_coding missense_variant MODERATE 416C>T Pro139Leu
M0144322 FEFFDEGL_00018 16116 5 Gut 0.83 protein_coding missense_variant MODERATE 53C>T Thr18Met
M0144323 FEFFDEGL_00018 16165 5 Gut 0.83 protein_coding synonymous_variant LOW 102A>T Pro34Pro
M0144324 FEFFDEGL_00018 16168 6 Gut 1.00 protein_coding synonymous_variant LOW 105T>C Gly35Gly
M0144325 FEFFDEGL_00018 16231 5 Gut 0.83 protein_coding synonymous_variant LOW 168C>T Thr56Thr
M0144326 FEFFDEGL_00018 16282 6 Gut 1.00 protein_coding synonymous_variant LOW 219T>C Gly73Gly
M0144327 FEFFDEGL_00018 16339 5 Gut 0.83 protein_coding synonymous_variant LOW 276A>G Gly92Gly
M0144328 FEFFDEGL_00019 16446 5 Gut 0.83 protein_coding missense_variant MODERATE 80C>A Pro27Gln
M0144329 FEFFDEGL_00019 16543 5 Gut 0.83 protein_coding synonymous_variant LOW 177A>T Arg59Arg
M0144330 FEFFDEGL_00019 16690 5 Gut 0.83 protein_coding synonymous_variant LOW 324G>A Gln108Gln
M0144331 FEFFDEGL_00019 16922 6 Gut 1.00 protein_coding missense_variant MODERATE 556T>G Ser186Ala
M0144332 FEFFDEGL_00019 16957 5 Gut 0.83 protein_coding synonymous_variant LOW 591C>A Arg197Arg
M0144333 FEFFDEGL_00019 16971 6 Gut 1.00 protein_coding missense_variant MODERATE 605T>A Leu202Gln
M0144334 FEFFDEGL_00019 17186 5 Gut 0.83 protein_coding missense_variant MODERATE 820A>G Arg274Gly
M0144335 FEFFDEGL_00019 17442 5 Gut 0.83 protein_coding splice_region_variant&stop_retained_variant LOW 1076G>A Ter359Ter
M0144336 FEFFDEGL_00020 17463 5 Gut 0.83 protein_coding missense_variant MODERATE 13G>A Glu5Lys
M0144337 FEFFDEGL_00020 17545 6 Gut 1.00 protein_coding missense_variant MODERATE 95T>C Val32Ala
M0144338 FEFFDEGL_00020 17558 6 Gut 1.00 protein_coding synonymous_variant LOW 108G>T Val36Val
M0144339 FEFFDEGL_00020 17587 5 Gut 0.83 protein_coding missense_variant MODERATE 137C>T Thr46Ile
M0144340 FEFFDEGL_00020 17591 5 Gut 0.83 protein_coding synonymous_variant LOW 141T>C Phe47Phe
M0144341 FEFFDEGL_00020 17648 5 Gut 0.83 protein_coding synonymous_variant LOW 198A>T Ala66Ala
M0144342 FEFFDEGL_00020 17654 5 Gut 0.83 protein_coding synonymous_variant LOW 204A>G Leu68Leu
M0144343 FEFFDEGL_00020 17822 5 Gut 0.83 protein_coding synonymous_variant LOW 372T>C Gly124Gly
M0144344 FEFFDEGL_00020 17861 5 Gut 0.83 protein_coding synonymous_variant LOW 411C>T Phe137Phe
M0144345 FEFFDEGL_00020 17927 5 Gut 0.83 protein_coding synonymous_variant LOW 477C>T Asn159Asn
M0144346 FEFFDEGL_00021 18158 5 Gut 0.83 protein_coding synonymous_variant LOW 138C>T Tyr46Tyr
M0144347 FEFFDEGL_00021 18197 5 Gut 0.83 protein_coding synonymous_variant LOW 177T>C Tyr59Tyr
M0144348 FEFFDEGL_00021 18212 5 Gut 0.83 protein_coding synonymous_variant LOW 192A>G Glu64Glu
M0144349 FEFFDEGL_00021 18311 5 Gut 0.83 protein_coding synonymous_variant LOW 291C>T Pro97Pro
M0144350 FEFFDEGL_00021 18521 6 Gut 1.00 protein_coding synonymous_variant LOW 501T>C Thr167Thr
M0144351 FEFFDEGL_00021 18558 5 Gut 0.83 protein_coding missense_variant MODERATE 538C>T His180Tyr
M0144352 FEFFDEGL_00021 18770 5 Gut 0.83 protein_coding synonymous_variant LOW 750A>G Ser250Ser
M0144353 FEFFDEGL_00021 18828 5 Gut 0.83 protein_coding missense_variant MODERATE 808G>A Ala270Thr
M0144354 FEFFDEGL_00021 18829 5 Gut 0.83 protein_coding missense_variant MODERATE 809C>T Ala270Val
M0144355 FEFFDEGL_00021 18902 5 Gut 0.83 protein_coding synonymous_variant LOW 882A>G Leu294Leu
M0144356 FEFFDEGL_00021 18924 5 Gut 0.83 protein_coding missense_variant MODERATE 904G>A Val302Ile
M0144357 FEFFDEGL_00021 18968 5 Gut 0.83 protein_coding synonymous_variant LOW 948C>T Leu316Leu
M0144358 FEFFDEGL_00021 19117 5 Gut 0.83 protein_coding missense_variant MODERATE 1097C>T Ser366Leu
M0144359 FEFFDEGL_00021 19128 5 Gut 0.83 protein_coding missense_variant MODERATE 1108C>T Pro370Ser
M0144360 FEFFDEGL_00021 19297 5 Gut 0.83 protein_coding missense_variant MODERATE 1277T>C Val426Ala
M0144361 FEFFDEGL_00021 19399 5 Gut 0.83 protein_coding splice_region_variant&stop_retained_variant LOW 1379G>A Ter460Ter
M0144362 FEFFDEGL_00022 19474 5 Gut 0.83 protein_coding synonymous_variant LOW 153A>G Leu51Leu
M0144363 FEFFDEGL_00022 19670 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -44T>C None
M0144364 FEFFDEGL_00022 19684 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -58A>C None
M0144365 FEFFDEGL_00022 19698 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -72A>C None
M0144366 FEFFDEGL_00022 19740 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -114C>T None
M0144367 FEFFDEGL_00022 19764 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -138C>T None
M0144368 FEFFDEGL_00023 19827 5 Gut 0.83 protein_coding synonymous_variant LOW 63A>T Pro21Pro
M0144369 FEFFDEGL_00023 19983 5 Gut 0.83 protein_coding synonymous_variant LOW 219T>C Ser73Ser
M0144370 FEFFDEGL_00023 19987 5 Gut 0.83 protein_coding missense_variant MODERATE 223C>A Leu75Ile
M0144371 FEFFDEGL_00023 20073 4 Gut 0.67 protein_coding missense_variant MODERATE 309G>A Met103Ile
M0144372 FEFFDEGL_00023 20134 6 Gut 1.00 protein_coding missense_variant MODERATE 370T>C Phe124Leu
M0144373 FEFFDEGL_00023 20163 5 Gut 0.83 protein_coding missense_variant MODERATE 399A>C Arg133Ser
M0144374 FEFFDEGL_00023 20170 6 Gut 1.00 protein_coding missense_variant MODERATE 406A>G Asn136Asp
M0144375 FEFFDEGL_00023 20234 5 Gut 0.83 protein_coding missense_variant MODERATE 470A>T Glu157Val
M0144376 FEFFDEGL_00022 20372 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -746T>C None
M0144377 FEFFDEGL_00022 20405 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -779A>G None
M0144378 FEFFDEGL_00022 20424 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -798A>G None
M0144379 FEFFDEGL_00022 20439 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -813A>G None
M0144380 FEFFDEGL_00022 20481 6 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -855A>C None
M0144381 FEFFDEGL_00022 20586 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -960C>T None
M0144382 FEFFDEGL_00024 20637 5 Gut 0.83 protein_coding synonymous_variant LOW 9C>T Ile3Ile
M0144383 FEFFDEGL_00024 20685 5 Gut 0.83 protein_coding synonymous_variant LOW 57A>G Gly19Gly
M0144384 FEFFDEGL_00024 20693 5 Gut 0.83 protein_coding missense_variant MODERATE 65A>G Glu22Gly
M0144385 FEFFDEGL_00024 20703 4 Gut 0.67 protein_coding synonymous_variant LOW 75T>A Ala25Ala
M0144386 FEFFDEGL_00024 20895 5 Gut 0.83 protein_coding synonymous_variant LOW 267A>G Lys89Lys
M0144387 FEFFDEGL_00024 20914 5 Gut 0.83 protein_coding missense_variant MODERATE 286G>A Val96Ile
M0144388 FEFFDEGL_00024 21080 5 Gut 0.83 protein_coding missense_variant MODERATE 452C>T Ser151Leu
M0144389 FEFFDEGL_00024 21228 5 Gut 0.83 protein_coding synonymous_variant LOW 600G>A Val200Val
M0144390 FEFFDEGL_00024 21366 5 Gut 0.83 protein_coding synonymous_variant LOW 738C>A Val246Val
M0144391 FEFFDEGL_00024 21416 5 Gut 0.83 protein_coding missense_variant MODERATE 788G>A Cys263Tyr
M0144392 FEFFDEGL_00024 21418 5 Gut 0.83 protein_coding missense_variant MODERATE 790A>T Thr264Ser
M0144393 FEFFDEGL_00024 21531 5 Gut 0.83 protein_coding synonymous_variant LOW 903G>A Thr301Thr
M0144394 FEFFDEGL_00024 21533 6 Gut 1.00 protein_coding missense_variant MODERATE 905T>C Val302Ala
M0144395 FEFFDEGL_00024 21580 6 Gut 1.00 protein_coding missense_variant MODERATE 952A>G Asn318Asp
M0144396 FEFFDEGL_00024 21603 5 Gut 0.83 protein_coding missense_variant MODERATE 975A>T Glu325Asp
M0144397 FEFFDEGL_00024 21627 5 Gut 0.83 protein_coding missense_variant MODERATE 999G>C Glu333Asp
M0144398 FEFFDEGL_00024 21749 6 Gut 1.00 protein_coding missense_variant MODERATE 1121C>G Thr374Ser
M0144399 FEFFDEGL_00024 21768 5 Gut 0.83 protein_coding synonymous_variant LOW 1140C>T Arg380Arg
M0144400 FEFFDEGL_00024 21854 5 Gut 0.83 protein_coding missense_variant MODERATE 1226G>C Gly409Ala
M0144401 FEFFDEGL_00024 21918 5 Gut 0.83 protein_coding synonymous_variant LOW 1290A>G Glu430Glu
M0144402 FEFFDEGL_00024 22090 5 Gut 0.83 protein_coding missense_variant MODERATE 1462G>C Val488Leu
M0144403 FEFFDEGL_00024 22133 5 Gut 0.83 protein_coding missense_variant MODERATE 1505A>G Glu502Gly
M0144404 FEFFDEGL_00024 22137 5 Gut 0.83 protein_coding synonymous_variant LOW 1509T>C Asn503Asn
M0144405 FEFFDEGL_00024 22144 4 Gut 0.67 protein_coding missense_variant MODERATE 1516G>A Val506Ile
M0144406 FEFFDEGL_00024 22179 4 Gut 0.67 protein_coding synonymous_variant LOW 1551G>A Gln517Gln
M0144407 FEFFDEGL_00024 22215 5 Gut 0.83 protein_coding synonymous_variant LOW 1587G>A Glu529Glu
M0144408 FEFFDEGL_00024 22243 5 Gut 0.83 protein_coding missense_variant MODERATE 1615G>T Ala539Ser
M0144409 FEFFDEGL_00024 22253 5 Gut 0.83 protein_coding missense_variant MODERATE 1625C>A Ser542Tyr
M0144410 FEFFDEGL_00024 22359 5 Gut 0.83 protein_coding synonymous_variant LOW 1731G>A Leu577Leu
M0144411 FEFFDEGL_00024 22545 5 Gut 0.83 protein_coding synonymous_variant LOW 1917C>A Ile639Ile
M0144412 FEFFDEGL_00024 22590 5 Gut 0.83 protein_coding missense_variant MODERATE 1962G>T Met654Ile
M0144413 FEFFDEGL_00024 22605 5 Gut 0.83 protein_coding missense_variant MODERATE 1977T>A Asp659Glu
M0144414 FEFFDEGL_00024 22637 5 Gut 0.83 protein_coding missense_variant MODERATE 2009T>C Val670Ala
M0144415 FEFFDEGL_00024 22863 6 Gut 1.00 protein_coding synonymous_variant LOW 2235A>G Thr745Thr
M0144416 FEFFDEGL_00024 22927 5 Gut 0.83 protein_coding missense_variant MODERATE 2299A>T Asn767Tyr
M0144417 FEFFDEGL_00024 22975 5 Gut 0.83 protein_coding missense_variant MODERATE 2347G>A Gly783Ser
M0144418 FEFFDEGL_00024 23136 5 Gut 0.83 protein_coding missense_variant MODERATE 2508C>G Asp836Glu
M0144419 FEFFDEGL_00024 23142 5 Gut 0.83 protein_coding synonymous_variant LOW 2514G>T Thr838Thr
M0144420 FEFFDEGL_00024 23143 5 Gut 0.83 protein_coding missense_variant MODERATE 2515A>C Lys839Gln
M0144421 FEFFDEGL_00024 23201 5 Gut 0.83 protein_coding missense_variant MODERATE 2573A>T Gln858Leu
M0144422 FEFFDEGL_00024 23349 5 Gut 0.83 protein_coding synonymous_variant LOW 2721C>A Ala907Ala
M0144423 FEFFDEGL_00024 23418 4 Gut 0.67 protein_coding synonymous_variant LOW 2790C>T Asp930Asp
M0144424 FEFFDEGL_00024 23500 4 Gut 0.67 protein_coding missense_variant MODERATE 2872A>T Met958Leu
M0144425 FEFFDEGL_00024 23628 5 Gut 0.83 protein_coding missense_variant MODERATE 3000A>T Leu1000Phe
M0144426 FEFFDEGL_00025 23820 5 Gut 0.83 protein_coding synonymous_variant LOW 51A>T Arg17Arg
M0144427 FEFFDEGL_00025 23961 6 Gut 1.00 protein_coding missense_variant MODERATE 192A>C Glu64Asp
M0144428 FEFFDEGL_00025 24123 5 Gut 0.83 protein_coding synonymous_variant LOW 354C>T Thr118Thr
M0144429 FEFFDEGL_00025 24167 5 Gut 0.83 protein_coding missense_variant MODERATE 398T>C Val133Ala
M0144430 FEFFDEGL_00025 24309 5 Gut 0.83 protein_coding synonymous_variant LOW 540G>T Leu180Leu
M0144431 FEFFDEGL_00025 24410 5 Gut 0.83 protein_coding missense_variant MODERATE 641C>T Thr214Ile
M0144432 FEFFDEGL_00025 24526 4 Gut 0.67 protein_coding missense_variant MODERATE 757G>T Ala253Ser
M0144433 FEFFDEGL_00025 24915 5 Gut 0.83 protein_coding synonymous_variant LOW 1146G>T Thr382Thr
M0144434 FEFFDEGL_00025 25033 6 Gut 1.00 protein_coding missense_variant MODERATE 1264A>C Lys422Gln
M0144435 FEFFDEGL_00025 25105 5 Gut 0.83 protein_coding missense_variant MODERATE 1336C>T Arg446Trp
M0144436 FEFFDEGL_00025 25278 6 Gut 1.00 protein_coding synonymous_variant LOW 1509T>C Ser503Ser
M0144437 FEFFDEGL_00025 25578 5 Gut 0.83 protein_coding synonymous_variant LOW 1809G>T Gly603Gly
M0144438 FEFFDEGL_00025 25647 5 Gut 0.83 protein_coding synonymous_variant LOW 1878G>A Lys626Lys
M0144439 FEFFDEGL_00025 25833 5 Gut 0.83 protein_coding synonymous_variant LOW 2064C>T Phe688Phe
M0144440 FEFFDEGL_00025 25869 5 Gut 0.83 protein_coding synonymous_variant LOW 2100C>T Ala700Ala
M0144441 FEFFDEGL_00025 26019 5 Gut 0.83 protein_coding synonymous_variant LOW 2250G>A Thr750Thr
M0144442 FEFFDEGL_00025 26138 5 Gut 0.83 protein_coding missense_variant MODERATE 2369G>A Cys790Tyr
M0144443 FEFFDEGL_00026 26469 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -531T>C None
M0144444 FEFFDEGL_00026 26607 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -393G>A None
M0144445 FEFFDEGL_00026 26610 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -390T>A None
M0144446 FEFFDEGL_00026 26666 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -334C>A None
M0144447 FEFFDEGL_00026 26730 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -270C>T None
M0144448 FEFFDEGL_00026 26989 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -11G>A None
M0144449 FEFFDEGL_00026 27065 5 Gut 0.83 protein_coding synonymous_variant LOW 66C>T Phe22Phe






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
FEFFDEGL_00068 VFG034721 Ibes 81.8 1.1e-286 1 572 0.9983 0.9913 Invasion phosphoethanolamine transferase CptA experiment
FEFFDEGL_00010 VFG035354 AAI/SCI-II T6SS 93 1.6e-79 1 158 1.0 1 Effector delivery system type VI secretion system contractile sheath small subunit prediction
FEFFDEGL_00011 VFG035359 AAI/SCI-II T6SS 96.5 1.5e-280 1 492 1.0 1 Effector delivery system type VI secretion system contractile sheath large subunit prediction
FEFFDEGL_00013 VFG035369 AAI/SCI-II T6SS 89.3 7.3e-68 1 140 1.0 1 Effector delivery system hypothetical protein prediction
FEFFDEGL_00014 VFG035374 AAI/SCI-II T6SS 86.5 1.59999999999162e-313 1 600 1.0 1 Effector delivery system type VI secretion system baseplate subunit TssF prediction
FEFFDEGL_00015 VFG035379 AAI/SCI-II T6SS 86.5 1.8e-159 1 310 1.0 1 Effector delivery system type VI secretion system baseplate subunit TssG prediction
FEFFDEGL_00016 VFG035384 AAI/SCI-II T6SS 79.7 1.3e-306 23 679 0.9676 0.9955 Effector delivery system type VI secretion system tip protein VgrG prediction
FEFFDEGL_00017 VFG035389 AAI/SCI-II T6SS 77.1 3.1e-67 1 153 0.9871 0.9871 Effector delivery system hypothetical protein prediction
FEFFDEGL_00018 VFG035394 AAI/SCI-II T6SS 89.9 6.6e-47 1 99 1.0 1 Effector delivery system PAAR domain-containing protein prediction
FEFFDEGL_00019 VFG035399 AAI/SCI-II T6SS 85.5 6.9e-179 1 358 1.0 1 Effector delivery system type VI secretion system protein TssA prediction
FEFFDEGL_00020 VFG035404 AAI/SCI-II T6SS 85.8 1.5e-89 1 183 1.0 1 Effector delivery system type VI secretion lipoprotein TssJ prediction
FEFFDEGL_00021 VFG035409 AAI/SCI-II T6SS 85.8 2.1e-233 1 451 0.9826 0.9596 Effector delivery system type VI secretion system baseplate subunit TssK prediction
FEFFDEGL_00023 VFG035422 AAI/SCI-II T6SS 75 1.6e-81 1 196 1.0 1 Effector delivery system DotU family type IV/VI secretion system protein prediction
FEFFDEGL_00024 VFG035428 AAI/SCI-II T6SS 80.1 0 1 1045 1.0 0.9215 Effector delivery system hypothetical protein prediction
FEFFDEGL_00025 VFG035429 AAI/SCI-II T6SS 88.5 0 1 842 1.0 0.9918 Effector delivery system type VI secretion system ATPase TssH prediction
FEFFDEGL_00068 VFG034689 Ibes 92.3 0 1 573 1.0 1 Invasion phosphoethanolamine transferase CptA prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FEFFDEGL_00067 WDB50797.1|GT4 93.2 1.21e-246 1 368 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term