Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C148
  Reference Plasmid   CP088727.1
  Reference Plasmid Size   42446
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0145436 OMDMPLIC_00033 31805 3 Gut 1.00 protein_coding missense_variant MODERATE 605C>T Ser202Leu
M0145437 OMDMPLIC_00033 32324 3 Gut 1.00 protein_coding missense_variant MODERATE 86G>T Gly29Val
M0145438 OMDMPLIC_00030 33220 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4515C>T None
M0145439 OMDMPLIC_00030 33294 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4589A>G None
M0145440 OMDMPLIC_00035 34401 3 Gut 1.00 protein_coding missense_variant MODERATE 221C>G Thr74Ser
M0145441 OMDMPLIC_00035 34422 3 Gut 1.00 protein_coding missense_variant MODERATE 200A>G Gln67Arg
M0145442 OMDMPLIC_00031 35261 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3792A>C None
M0145443 OMDMPLIC_00038 35892 3 Gut 1.00 protein_coding missense_variant MODERATE 37A>C Lys13Gln
M0145444 OMDMPLIC_00038 35919 3 Gut 1.00 protein_coding missense_variant MODERATE 64C>G Leu22Val
M0145445 OMDMPLIC_00032 36626 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4842G>A None
M0145446 OMDMPLIC_00034 37553 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4899C>T None
M0145447 OMDMPLIC_00035 38560 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3939G>T None
M0145448 OMDMPLIC_00045 39103 3 Gut 1.00 protein_coding synonymous_variant LOW 258T>C Phe86Phe
M0145449 OMDMPLIC_00045 39357 3 Gut 1.00 protein_coding missense_variant MODERATE 4T>C Tyr2His
M0145450 OMDMPLIC_00046 39743 3 Gut 1.00 protein_coding synonymous_variant LOW 126A>G Gln42Gln






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
OMDMPLIC_00033 AWH59259.1|GH23 99.5 1.07e-152 1 215 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
OMDMPLIC_00014 2.A.1.61.1 98.8 1e-218 1 404 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)