Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C157
  Reference Plasmid   CP090076.1
  Reference Plasmid Size   95138
  Reference Plasmid GC Content   0.48
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0145706 EMCABGON_00006 6431 3 Gut 0.50 protein_coding synonymous_variant LOW 69T>C Ala23Ala
M0145707 EMCABGON_00006 6901 3 Gut 0.50 protein_coding missense_variant MODERATE 539T>C Ile180Thr
M0145708 EMCABGON_00038 32498 3 Gut 0.50 protein_coding missense_variant MODERATE 322A>G Ile108Val
M0145709 EMCABGON_00040 34064 3 Gut 0.50 protein_coding missense_variant MODERATE 854T>G Val285Gly
M0145710 EMCABGON_00040 34257 3 Gut 0.50 protein_coding missense_variant MODERATE 1047A>G Ile349Met
M0145711 EMCABGON_00041 35195 3 Gut 0.50 protein_coding synonymous_variant LOW 69G>T Ala23Ala
M0145712 EMCABGON_00042 35528 3 Gut 0.50 protein_coding synonymous_variant LOW 24G>A Val8Val
M0145713 EMCABGON_00042 36872 3 Gut 0.50 protein_coding synonymous_variant LOW 1368C>T Ser456Ser
M0145714 EMCABGON_00042 37218 3 Gut 0.50 protein_coding missense_variant MODERATE 1714A>G Ile572Val
M0145715 EMCABGON_00045 40467 5 Gut 0.83 protein_coding synonymous_variant LOW 231C>T Arg77Arg
M0145716 EMCABGON_00044 40807 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -891A>C None
M0145717 EMCABGON_00046 41188 5 Gut 0.83 protein_coding synonymous_variant LOW 201C>T Ile67Ile
M0145718 EMCABGON_00044 41473 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -1557T>C None
M0145719 EMCABGON_00047 41847 3 Gut 0.50 protein_coding missense_variant MODERATE 290T>G Leu97Arg
M0145720 EMCABGON_00044 42173 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -2257G>A None
M0145721 EMCABGON_00044 42233 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -2317T>C None
M0145722 EMCABGON_00044 42278 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -2362T>C None
M0145723 EMCABGON_00044 42314 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -2398G>A None
M0145724 EMCABGON_00044 42320 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -2404A>G None
M0145725 EMCABGON_00044 42332 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -2416T>G None
M0145726 EMCABGON_00044 42350 5 Gut 0.83 protein_coding upstream_gene_variant MODIFIER -2434T>C None
M0145727 EMCABGON_00044 42403 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2487T>C None
M0145728 EMCABGON_00048 42620 3 Gut 0.50 protein_coding synonymous_variant LOW 807T>C Ile269Ile
M0145729 EMCABGON_00048 43361 3 Gut 0.50 protein_coding synonymous_variant LOW 66T>C Arg22Arg
M0145730 EMCABGON_00049 43527 3 Gut 0.50 protein_coding synonymous_variant LOW 1602T>G Ala534Ala
M0145731 EMCABGON_00049 43617 3 Gut 0.50 protein_coding synonymous_variant LOW 1512T>C Ala504Ala
M0145732 EMCABGON_00049 44157 3 Gut 0.50 protein_coding synonymous_variant LOW 972G>A Ser324Ser
M0145733 EMCABGON_00049 44292 3 Gut 0.50 protein_coding synonymous_variant LOW 837T>C Tyr279Tyr
M0145734 EMCABGON_00049 44475 3 Gut 0.50 protein_coding synonymous_variant LOW 654T>C Asp218Asp
M0145735 EMCABGON_00049 44511 3 Gut 0.50 protein_coding synonymous_variant LOW 618C>T Gly206Gly
M0145736 EMCABGON_00049 44540 3 Gut 0.50 protein_coding missense_variant MODERATE 589G>A Gly197Ser
M0145737 EMCABGON_00049 44852 3 Gut 0.50 protein_coding synonymous_variant LOW 277T>C Leu93Leu
M0145738 EMCABGON_00050 45341 3 Gut 0.50 protein_coding synonymous_variant LOW 138A>G Leu46Leu
M0145739 EMCABGON_00050 45368 3 Gut 0.50 protein_coding synonymous_variant LOW 165T>A Ile55Ile
M0145740 EMCABGON_00050 45566 3 Gut 0.50 protein_coding synonymous_variant LOW 363C>A Gly121Gly
M0145741 EMCABGON_00050 45755 3 Gut 0.50 protein_coding synonymous_variant LOW 552T>C Gly184Gly
M0145742 EMCABGON_00050 45998 3 Gut 0.50 protein_coding synonymous_variant LOW 795G>A Thr265Thr
M0145743 EMCABGON_00050 46007 3 Gut 0.50 protein_coding synonymous_variant LOW 804C>T Asp268Asp
M0145744 EMCABGON_00050 46034 3 Gut 0.50 protein_coding synonymous_variant LOW 831G>A Ala277Ala
M0145745 EMCABGON_00050 46068 3 Gut 0.50 protein_coding missense_variant MODERATE 865G>A Gly289Ser
M0145746 EMCABGON_00050 46157 3 Gut 0.50 protein_coding synonymous_variant LOW 954T>C Thr318Thr
M0145747 EMCABGON_00050 46394 3 Gut 0.50 protein_coding synonymous_variant LOW 1191G>A Glu397Glu
M0145748 EMCABGON_00050 46397 3 Gut 0.50 protein_coding synonymous_variant LOW 1194G>T Leu398Leu
M0145749 EMCABGON_00050 46408 3 Gut 0.50 protein_coding missense_variant MODERATE 1205T>C Val402Ala
M0145750 EMCABGON_00050 46427 3 Gut 0.50 protein_coding synonymous_variant LOW 1224C>T Asp408Asp
M0145751 EMCABGON_00050 46514 3 Gut 0.50 protein_coding synonymous_variant LOW 1311A>G Lys437Lys
M0145752 EMCABGON_00050 46991 3 Gut 0.50 protein_coding missense_variant MODERATE 1788C>A Asp596Glu
M0145753 EMCABGON_00050 47024 3 Gut 0.50 protein_coding synonymous_variant LOW 1821C>T Gly607Gly
M0145754 EMCABGON_00050 47213 3 Gut 0.50 protein_coding synonymous_variant LOW 2010G>C Arg670Arg
M0145755 EMCABGON_00050 47249 3 Gut 0.50 protein_coding synonymous_variant LOW 2046G>C Val682Val
M0145756 EMCABGON_00050 47486 3 Gut 0.50 protein_coding synonymous_variant LOW 2283G>C Leu761Leu
M0145757 EMCABGON_00050 47547 3 Gut 0.50 protein_coding missense_variant MODERATE 2344T>G Ser782Ala
M0145758 EMCABGON_00050 47627 3 Gut 0.50 protein_coding synonymous_variant LOW 2424T>G Val808Val
M0145759 EMCABGON_00051 48213 3 Gut 0.50 protein_coding synonymous_variant LOW 225A>G Gly75Gly
M0145760 EMCABGON_00052 49016 3 Gut 0.50 protein_coding synonymous_variant LOW 526C>A Arg176Arg
M0145761 EMCABGON_00052 49261 3 Gut 0.50 protein_coding synonymous_variant LOW 771A>G Thr257Thr
M0145762 EMCABGON_00052 49282 3 Gut 0.50 protein_coding synonymous_variant LOW 792C>T Ile264Ile
M0145763 EMCABGON_00052 49345 3 Gut 0.50 protein_coding synonymous_variant LOW 855G>A Gln285Gln
M0145764 EMCABGON_00052 49405 3 Gut 0.50 protein_coding synonymous_variant LOW 915T>G Gly305Gly
M0145765 EMCABGON_00052 49574 3 Gut 0.50 protein_coding synonymous_variant LOW 1084T>C Leu362Leu
M0145766 EMCABGON_00052 49582 3 Gut 0.50 protein_coding synonymous_variant LOW 1092T>G Gly364Gly
M0145767 EMCABGON_00052 49597 3 Gut 0.50 protein_coding synonymous_variant LOW 1107A>T Ala369Ala
M0145768 EMCABGON_00052 49681 3 Gut 0.50 protein_coding synonymous_variant LOW 1191G>T Thr397Thr
M0145769 EMCABGON_00052 49684 3 Gut 0.50 protein_coding synonymous_variant LOW 1194T>C Asp398Asp
M0145770 EMCABGON_00052 49690 3 Gut 0.50 protein_coding synonymous_variant LOW 1200C>T His400His
M0145771 EMCABGON_00052 49693 3 Gut 0.50 protein_coding synonymous_variant LOW 1203C>T His401His
M0145772 EMCABGON_00052 49705 3 Gut 0.50 protein_coding synonymous_variant LOW 1215G>A Pro405Pro
M0145773 EMCABGON_00052 49729 3 Gut 0.50 protein_coding synonymous_variant LOW 1239A>G Gln413Gln
M0145774 EMCABGON_00052 49747 3 Gut 0.50 protein_coding synonymous_variant LOW 1257A>C Ala419Ala
M0145775 EMCABGON_00052 49756 3 Gut 0.50 protein_coding synonymous_variant LOW 1266C>T Gly422Gly
M0145776 EMCABGON_00052 49801 3 Gut 0.50 protein_coding synonymous_variant LOW 1311G>T Gly437Gly
M0145777 EMCABGON_00052 49867 3 Gut 0.50 protein_coding synonymous_variant LOW 1377T>C Arg459Arg
M0145778 EMCABGON_00052 49879 3 Gut 0.50 protein_coding synonymous_variant LOW 1389A>T Ser463Ser
M0145779 EMCABGON_00052 49903 3 Gut 0.50 protein_coding synonymous_variant LOW 1413T>C Asn471Asn
M0145780 EMCABGON_00052 49906 3 Gut 0.50 protein_coding synonymous_variant LOW 1416C>T Asp472Asp
M0145781 EMCABGON_00052 49933 3 Gut 0.50 protein_coding synonymous_variant LOW 1443G>T Ala481Ala
M0145782 EMCABGON_00052 49942 3 Gut 0.50 protein_coding synonymous_variant LOW 1452C>T Asp484Asp
M0145783 EMCABGON_00052 49956 3 Gut 0.50 protein_coding missense_variant MODERATE 1466T>C Val489Ala
M0145784 EMCABGON_00052 49990 3 Gut 0.50 protein_coding synonymous_variant LOW 1500T>C Ala500Ala
M0145785 EMCABGON_00052 49994 3 Gut 0.50 protein_coding missense_variant MODERATE 1504A>C Lys502Gln
M0145786 EMCABGON_00052 50065 3 Gut 0.50 protein_coding synonymous_variant LOW 1575T>C Gly525Gly
M0145787 EMCABGON_00052 50095 3 Gut 0.50 protein_coding synonymous_variant LOW 1605G>A Leu535Leu
M0145788 EMCABGON_00052 50134 3 Gut 0.50 protein_coding missense_variant MODERATE 1644C>G Asp548Glu
M0145789 EMCABGON_00052 50137 3 Gut 0.50 protein_coding synonymous_variant LOW 1647C>A Val549Val
M0145790 EMCABGON_00052 50140 3 Gut 0.50 protein_coding synonymous_variant LOW 1650C>T Ala550Ala
M0145791 EMCABGON_00052 50191 3 Gut 0.50 protein_coding synonymous_variant LOW 1701A>G Lys567Lys
M0145792 EMCABGON_00052 50203 3 Gut 0.50 protein_coding synonymous_variant LOW 1713T>G Gly571Gly
M0145793 EMCABGON_00052 50259 3 Gut 0.50 protein_coding missense_variant MODERATE 1769G>A Ser590Asn
M0145794 EMCABGON_00052 50290 3 Gut 0.50 protein_coding synonymous_variant LOW 1800G>A Gln600Gln
M0145795 EMCABGON_00052 50410 3 Gut 0.50 protein_coding synonymous_variant LOW 1920T>C Asp640Asp
M0145796 EMCABGON_00052 50427 3 Gut 0.50 protein_coding missense_variant MODERATE 1937A>G Asn646Ser
M0145797 EMCABGON_00052 50476 3 Gut 0.50 protein_coding synonymous_variant LOW 1986T>C Tyr662Tyr
M0145798 EMCABGON_00052 50743 3 Gut 0.50 protein_coding synonymous_variant LOW 2253A>G Ser751Ser
M0145799 EMCABGON_00052 50791 3 Gut 0.50 protein_coding synonymous_variant LOW 2301C>T Gly767Gly
M0145800 EMCABGON_00052 51056 3 Gut 0.50 protein_coding missense_variant MODERATE 2566T>G Ser856Ala
M0145801 EMCABGON_00052 51183 3 Gut 0.50 protein_coding missense_variant MODERATE 2693A>C Asp898Ala
M0145802 EMCABGON_00052 51214 3 Gut 0.50 protein_coding synonymous_variant LOW 2724T>C Ser908Ser
M0145803 EMCABGON_00052 51223 3 Gut 0.50 protein_coding synonymous_variant LOW 2733T>C Ile911Ile
M0145804 EMCABGON_00052 51236 3 Gut 0.50 protein_coding missense_variant MODERATE 2746A>G Lys916Glu
M0145805 EMCABGON_00052 51313 3 Gut 0.50 protein_coding synonymous_variant LOW 2823A>G Gly941Gly
M0145806 EMCABGON_00052 51325 3 Gut 0.50 protein_coding synonymous_variant LOW 2835G>T Pro945Pro
M0145807 EMCABGON_00052 51331 3 Gut 0.50 protein_coding synonymous_variant LOW 2841T>A Ile947Ile
M0145808 EMCABGON_00052 51545 3 Gut 0.50 protein_coding missense_variant MODERATE 3055G>A Val1019Ile
M0145809 EMCABGON_00052 51565 3 Gut 0.50 protein_coding synonymous_variant LOW 3075A>G Gly1025Gly
M0145810 EMCABGON_00052 51610 3 Gut 0.50 protein_coding synonymous_variant LOW 3120G>A Leu1040Leu
M0145811 EMCABGON_00052 51637 3 Gut 0.50 protein_coding synonymous_variant LOW 3147A>G Glu1049Glu
M0145812 EMCABGON_00054 52506 3 Gut 0.50 protein_coding synonymous_variant LOW 63C>T Asp21Asp
M0145813 EMCABGON_00055 52954 3 Gut 0.50 protein_coding synonymous_variant LOW 420T>C Ser140Ser
M0145814 EMCABGON_00056 53797 3 Gut 0.50 protein_coding synonymous_variant LOW 327A>G Val109Val
M0145815 EMCABGON_00055 54207 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -834A>C None
M0145816 EMCABGON_00058 54983 3 Gut 0.50 protein_coding synonymous_variant LOW 781T>C Leu261Leu
M0145817 EMCABGON_00058 55149 3 Gut 0.50 protein_coding synonymous_variant LOW 615T>C Ser205Ser
M0145818 EMCABGON_00058 55359 3 Gut 0.50 protein_coding synonymous_variant LOW 405A>G Leu135Leu
M0145819 EMCABGON_00058 55362 3 Gut 0.50 protein_coding synonymous_variant LOW 402T>A Ala134Ala
M0145820 EMCABGON_00058 55410 3 Gut 0.50 protein_coding synonymous_variant LOW 354G>A Arg118Arg
M0145821 EMCABGON_00058 55416 3 Gut 0.50 protein_coding synonymous_variant LOW 348T>C Val116Val
M0145822 EMCABGON_00058 55476 3 Gut 0.50 protein_coding synonymous_variant LOW 288C>T Asn96Asn
M0145823 EMCABGON_00058 55509 3 Gut 0.50 protein_coding synonymous_variant LOW 255A>G Val85Val
M0145824 EMCABGON_00059 55780 3 Gut 0.50 protein_coding synonymous_variant LOW 213T>C Thr71Thr
M0145825 EMCABGON_00059 55804 3 Gut 0.50 protein_coding synonymous_variant LOW 189A>G Pro63Pro
M0145826 EMCABGON_00055 56182 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -2809A>T None
M0145827 EMCABGON_00055 56184 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -2811A>T None
M0145828 EMCABGON_00061 57168 4 Gut 0.67 protein_coding synonymous_variant LOW 252T>A Pro84Pro
M0145829 EMCABGON_00061 57429 3 Gut 0.50 protein_coding synonymous_variant LOW 513C>T His171His
M0145830 EMCABGON_00061 57579 3 Gut 0.50 protein_coding synonymous_variant LOW 663T>C Ser221Ser
M0145831 EMCABGON_00080 67629 3 Gut 0.50 protein_coding synonymous_variant LOW 441T>C Arg147Arg
M0145832 EMCABGON_00080 67905 3 Gut 0.50 protein_coding synonymous_variant LOW 165A>G Lys55Lys
M0145833 EMCABGON_00081 68160 3 Gut 0.50 protein_coding missense_variant MODERATE 100C>T His34Tyr
M0145834 EMCABGON_00081 68167 3 Gut 0.50 protein_coding synonymous_variant LOW 93A>G Leu31Leu
M0145835 EMCABGON_00087 71527 3 Gut 0.50 protein_coding missense_variant MODERATE 152A>C Glu51Ala
M0145836 EMCABGON_00097 78085 3 Gut 0.50 protein_coding missense_variant MODERATE 242G>A Gly81Glu
M0145837 EMCABGON_00101 81002 3 Gut 0.50 protein_coding missense_variant MODERATE 670A>T Met224Leu
M0145838 EMCABGON_00114 91285 3 Gut 0.50 protein_coding missense_variant MODERATE 58C>T Arg20Trp
M0145839 EMCABGON_00115 91582 3 Gut 0.50 protein_coding synonymous_variant LOW 663A>G Leu221Leu
M0145840 EMCABGON_00116 92495 3 Gut 0.50 protein_coding synonymous_variant LOW 27G>A Lys9Lys
M0145841 EMCABGON_00111 92581 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4575C>T None
M0145842 EMCABGON_00111 92622 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4616T>C None
M0145843 EMCABGON_00111 92626 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4620C>A None
M0145844 EMCABGON_00111 92632 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4626G>A None
M0145845 EMCABGON_00111 92678 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4672G>T None
M0145846 EMCABGON_00111 92747 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4741A>G None
M0145847 EMCABGON_00111 92837 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4831C>T None
M0145848 EMCABGON_00111 92843 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4837G>A None
M0145849 EMCABGON_00111 92852 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4846G>A None
M0145850 EMCABGON_00111 92891 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4885G>A None
M0145851 EMCABGON_00111 92894 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4888C>A None
M0145852 EMCABGON_00111 92918 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4912A>G None
M0145853 EMCABGON_00111 92933 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4927G>T None
M0145854 EMCABGON_00111 92942 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4936A>T None
M0145855 EMCABGON_00111 92945 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4939T>C None
M0145856 EMCABGON_00111 92946 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4940C>A None
M0145857 EMCABGON_00117 93319 3 Gut 0.50 protein_coding synonymous_variant LOW 336T>A Val112Val
M0145858 EMCABGON_00117 93357 3 Gut 0.50 protein_coding missense_variant MODERATE 374A>C Asn125Thr
M0145859 EMCABGON_00117 93385 3 Gut 0.50 protein_coding synonymous_variant LOW 402T>A Val134Val
M0145860 EMCABGON_00118 94174 3 Gut 0.50 protein_coding synonymous_variant LOW 363T>C Asp121Asp
M0145861 EMCABGON_00114 94247 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2905T>G None
M0145862 EMCABGON_00114 94268 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2926C>T None
M0145863 EMCABGON_00045 40676 3 Gut 0.50 protein_coding missense_variant MODERATE 22G>A Ala8Thr
M0145864 EMCABGON_00044 40790 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -874A>C None
M0145865 EMCABGON_00044 40796 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -880C>A None
M0145866 EMCABGON_00044 40801 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -885C>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
EMCABGON_00047 AJS09995.1|GH24 99.5 2.22e-137 1 185 1 1
EMCABGON_00052 AYL89119.1|GH24 97.2 0 658 1160 0.4336 0.9031





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
EMCABGON_00037 1.E.4.1.1 100 1.3e-54 1 109 1.0000 1.0000 1 Channels/Pores 1.E Holins 1.E.4 The LydA Holin (LydA Holin) Family