Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C158
  Reference Plasmid   CP090417.1
  Reference Plasmid Size   117458
  Reference Plasmid GC Content   0.39
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0059410 GFMPECDN_00018 24767 3 Skin 0.23 protein_coding missense_variant MODERATE 585C>G Asn195Lys
M0059411 GFMPECDN_00018 24770 3 Skin 0.23 protein_coding synonymous_variant LOW 588A>G Leu196Leu
M0059412 GFMPECDN_00018 24788 3 Skin 0.23 protein_coding synonymous_variant LOW 606T>C Ser202Ser
M0059413 GFMPECDN_00018 24804 3 Skin 0.23 protein_coding missense_variant MODERATE 622A>G Lys208Glu
M0059414 GFMPECDN_00018 24857 3 Skin 0.23 protein_coding synonymous_variant LOW 675T>C Asp225Asp
M0059415 GFMPECDN_00018 24860 3 Skin 0.23 protein_coding synonymous_variant LOW 678G>A Lys226Lys
M0059416 GFMPECDN_00018 25106 3 Skin 0.23 protein_coding synonymous_variant LOW 924G>A Gly308Gly
M0059417 GFMPECDN_00018 25112 3 Skin 0.23 protein_coding synonymous_variant LOW 930G>A Val310Val
M0059418 GFMPECDN_00018 25115 3 Skin 0.23 protein_coding synonymous_variant LOW 933G>A Lys311Lys
M0059419 GFMPECDN_00018 25132 3 Skin 0.23 protein_coding missense_variant MODERATE 950G>A Ser317Asn
M0059420 GFMPECDN_00018 25169 3 Skin 0.23 protein_coding synonymous_variant LOW 987T>C Gly329Gly
M0059421 GFMPECDN_00018 25193 3 Skin 0.23 protein_coding missense_variant MODERATE 1011A>T Glu337Asp
M0059422 GFMPECDN_00018 25238 3 Skin 0.23 protein_coding synonymous_variant LOW 1056G>A Ala352Ala
M0059423 GFMPECDN_00018 25250 3 Skin 0.23 protein_coding synonymous_variant LOW 1068G>T Ala356Ala
M0059424 GFMPECDN_00018 25298 3 Skin 0.23 protein_coding synonymous_variant LOW 1116C>T Ser372Ser
M0059425 GFMPECDN_00018 25414 3 Skin 0.23 protein_coding missense_variant MODERATE 1232A>G Asn411Ser
M0059426 GFMPECDN_00018 25520 3 Skin 0.23 protein_coding synonymous_variant LOW 1338G>A Glu446Glu
M0059427 GFMPECDN_00018 25571 3 Skin 0.23 protein_coding synonymous_variant LOW 1389G>A Gln463Gln
M0059428 GFMPECDN_00018 25631 3 Skin 0.23 protein_coding synonymous_variant LOW 1449A>G Ala483Ala
M0059429 GFMPECDN_00018 25721 3 Skin 0.23 protein_coding synonymous_variant LOW 1539G>A Val513Val
M0059430 GFMPECDN_00018 25847 3 Skin 0.23 protein_coding missense_variant MODERATE 1665A>T Gln555His






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term