Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C166
  Reference Plasmid   CP099029.1
  Reference Plasmid Size   102491
  Reference Plasmid GC Content   0.51
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0145993 CLKFGNDH_00032 34559 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4908G>A None
M0145994 CLKFGNDH_00032 34571 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4920T>C None
M0145995 CLKFGNDH_00032 34630 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4979T>G None
M0145996 CLKFGNDH_00032 34632 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4981T>C None
M0145997 CLKFGNDH_00032 34634 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4983C>T None
M0145998 CLKFGNDH_00033 34652 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3964T>A None
M0145999 CLKFGNDH_00033 34663 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3975G>A None
M0146000 CLKFGNDH_00033 34664 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3976A>C None
M0146001 CLKFGNDH_00033 34665 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3977G>A None
M0146002 CLKFGNDH_00033 34672 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -3984C>G None
M0146003 CLKFGNDH_00033 34712 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4024T>C None
M0146004 CLKFGNDH_00033 34811 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4123A>T None
M0146005 CLKFGNDH_00033 34812 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4124A>T None
M0146006 CLKFGNDH_00033 35024 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4336A>C None
M0146007 CLKFGNDH_00037 35485 5 Gut 0.50 protein_coding missense_variant MODERATE 563T>C Leu188Pro
M0146008 CLKFGNDH_00034 36048 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3655G>T None
M0146009 CLKFGNDH_00039 36861 5 Gut 0.50 protein_coding synonymous_variant LOW 576G>A Pro192Pro
M0146010 CLKFGNDH_00039 36864 5 Gut 0.50 protein_coding synonymous_variant LOW 573C>A Ser191Ser
M0146011 CLKFGNDH_00039 37197 5 Gut 0.50 protein_coding synonymous_variant LOW 240G>A Lys80Lys
M0146012 CLKFGNDH_00039 37235 5 Gut 0.50 protein_coding missense_variant MODERATE 202C>A Arg68Ser
M0146013 CLKFGNDH_00039 37254 5 Gut 0.50 protein_coding synonymous_variant LOW 183G>T Leu61Leu
M0146014 CLKFGNDH_00039 37276 5 Gut 0.50 protein_coding missense_variant MODERATE 161G>A Cys54Tyr
M0146015 CLKFGNDH_00039 37302 5 Gut 0.50 protein_coding synonymous_variant LOW 135A>G Ala45Ala
M0146016 CLKFGNDH_00039 37413 5 Gut 0.50 protein_coding synonymous_variant LOW 24C>T Leu8Leu
M0146017 CLKFGNDH_00039 37430 5 Gut 0.50 protein_coding synonymous_variant LOW 7T>C Leu3Leu
M0146018 CLKFGNDH_00036 37438 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3364T>C None
M0146019 CLKFGNDH_00036 37454 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3380G>A None
M0146020 CLKFGNDH_00036 37490 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3416A>G None
M0146021 CLKFGNDH_00036 37535 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3461G>A None
M0146022 CLKFGNDH_00036 37541 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3467G>A None
M0146023 CLKFGNDH_00036 37614 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3540T>A None
M0146024 CLKFGNDH_00036 37652 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3578A>C None
M0146025 CLKFGNDH_00036 37693 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3619G>A None
M0146026 CLKFGNDH_00036 37707 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3633C>T None
M0146027 CLKFGNDH_00040 37741 5 Gut 0.50 protein_coding synonymous_variant LOW 450G>A Arg150Arg
M0146028 CLKFGNDH_00040 37756 5 Gut 0.50 protein_coding synonymous_variant LOW 435C>A Pro145Pro
M0146029 CLKFGNDH_00040 37832 5 Gut 0.50 protein_coding missense_variant MODERATE 359A>C Asp120Ala
M0146030 CLKFGNDH_00040 37978 5 Gut 0.50 protein_coding synonymous_variant LOW 213C>T Val71Val
M0146031 CLKFGNDH_00040 38008 5 Gut 0.50 protein_coding synonymous_variant LOW 183G>A Arg61Arg
M0146032 CLKFGNDH_00040 38015 5 Gut 0.50 protein_coding missense_variant MODERATE 176A>G Tyr59Cys
M0146033 CLKFGNDH_00036 38253 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4179G>A None
M0146034 CLKFGNDH_00041 38479 5 Gut 0.50 protein_coding stop_lost&splice_region_variant HIGH 166T>C Ter56Argext*?
M0146035 CLKFGNDH_00041 38606 5 Gut 0.50 protein_coding synonymous_variant LOW 39T>C Val13Val
M0146036 CLKFGNDH_00042 38910 5 Gut 0.50 protein_coding synonymous_variant LOW 426T>C Cys142Cys
M0146037 CLKFGNDH_00042 38968 5 Gut 0.50 protein_coding missense_variant MODERATE 368T>C Val123Ala
M0146038 CLKFGNDH_00042 38972 5 Gut 0.50 protein_coding synonymous_variant LOW 364A>C Arg122Arg
M0146039 CLKFGNDH_00042 39075 5 Gut 0.50 protein_coding synonymous_variant LOW 261G>A Leu87Leu
M0146040 CLKFGNDH_00042 39093 5 Gut 0.50 protein_coding synonymous_variant LOW 243A>G Lys81Lys
M0146041 CLKFGNDH_00042 39102 5 Gut 0.50 protein_coding synonymous_variant LOW 234T>C Asn78Asn
M0146042 CLKFGNDH_00042 39108 5 Gut 0.50 protein_coding synonymous_variant LOW 228C>T Ala76Ala
M0146043 CLKFGNDH_00042 39147 5 Gut 0.50 protein_coding synonymous_variant LOW 189A>G Ala63Ala
M0146044 CLKFGNDH_00042 39150 5 Gut 0.50 protein_coding synonymous_variant LOW 186G>A Gln62Gln
M0146045 CLKFGNDH_00042 39210 5 Gut 0.50 protein_coding missense_variant MODERATE 126G>C Lys42Asn
M0146046 CLKFGNDH_00042 39231 5 Gut 0.50 protein_coding synonymous_variant LOW 105G>A Lys35Lys
M0146047 CLKFGNDH_00042 39271 5 Gut 0.50 protein_coding missense_variant MODERATE 65A>G His22Arg
M0146048 CLKFGNDH_00042 39283 5 Gut 0.50 protein_coding missense_variant MODERATE 53A>G Glu18Gly
M0146049 CLKFGNDH_00042 39291 5 Gut 0.50 protein_coding synonymous_variant LOW 45G>A Thr15Thr
M0146050 CLKFGNDH_00037 39365 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3318C>G None
M0146051 CLKFGNDH_00037 39368 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3321T>C None
M0146052 CLKFGNDH_00037 39372 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3325A>G None
M0146053 CLKFGNDH_00043 39391 5 Gut 0.50 protein_coding splice_region_variant&stop_retained_variant LOW 746G>A Ter249Ter
M0146054 CLKFGNDH_00043 39394 5 Gut 0.50 protein_coding missense_variant MODERATE 743C>T Pro248Leu
M0146055 CLKFGNDH_00043 39429 5 Gut 0.50 protein_coding synonymous_variant LOW 708C>T Tyr236Tyr
M0146056 CLKFGNDH_00043 39435 5 Gut 0.50 protein_coding synonymous_variant LOW 702A>G Val234Val
M0146057 CLKFGNDH_00043 39436 5 Gut 0.50 protein_coding missense_variant MODERATE 701T>C Val234Ala
M0146058 CLKFGNDH_00043 39437 5 Gut 0.50 protein_coding missense_variant MODERATE 700G>A Val234Ile
M0146059 CLKFGNDH_00043 39450 5 Gut 0.50 protein_coding synonymous_variant LOW 687G>A Gly229Gly
M0146060 CLKFGNDH_00043 39522 5 Gut 0.50 protein_coding synonymous_variant LOW 615T>C Gly205Gly
M0146061 CLKFGNDH_00043 39537 5 Gut 0.50 protein_coding synonymous_variant LOW 600A>C Ala200Ala
M0146062 CLKFGNDH_00043 39555 5 Gut 0.50 protein_coding synonymous_variant LOW 582C>T Asn194Asn
M0146063 CLKFGNDH_00043 40050 5 Gut 0.50 protein_coding synonymous_variant LOW 87A>C Ser29Ser
M0146064 CLKFGNDH_00043 40059 5 Gut 0.50 protein_coding synonymous_variant LOW 78G>A Leu26Leu
M0146065 CLKFGNDH_00043 40062 5 Gut 0.50 protein_coding missense_variant MODERATE 75T>G Phe25Leu
M0146066 CLKFGNDH_00043 40077 5 Gut 0.50 protein_coding synonymous_variant LOW 60C>T Thr20Thr
M0146067 CLKFGNDH_00037 40140 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4093A>G None
M0146068 CLKFGNDH_00037 40145 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4098C>T None
M0146069 CLKFGNDH_00044 40171 5 Gut 0.50 protein_coding synonymous_variant LOW 5256C>T Thr1752Thr
M0146070 CLKFGNDH_00044 40222 5 Gut 0.50 protein_coding synonymous_variant LOW 5205T>A Arg1735Arg
M0146071 CLKFGNDH_00044 40237 5 Gut 0.50 protein_coding synonymous_variant LOW 5190T>C Asn1730Asn
M0146072 CLKFGNDH_00044 40255 5 Gut 0.50 protein_coding synonymous_variant LOW 5172G>C Arg1724Arg
M0146073 CLKFGNDH_00044 40270 5 Gut 0.50 protein_coding synonymous_variant LOW 5157G>A Glu1719Glu
M0146074 CLKFGNDH_00044 40281 5 Gut 0.50 protein_coding missense_variant MODERATE 5146T>C Ser1716Pro
M0146075 CLKFGNDH_00044 40291 5 Gut 0.50 protein_coding synonymous_variant LOW 5136G>A Val1712Val
M0146076 CLKFGNDH_00044 40357 5 Gut 0.50 protein_coding synonymous_variant LOW 5070G>A Glu1690Glu
M0146077 CLKFGNDH_00044 40370 5 Gut 0.50 protein_coding missense_variant MODERATE 5057A>T Gln1686Leu
M0146078 CLKFGNDH_00044 40379 5 Gut 0.50 protein_coding missense_variant MODERATE 5048G>A Arg1683Lys
M0146079 CLKFGNDH_00044 40417 5 Gut 0.50 protein_coding missense_variant MODERATE 5010A>T Arg1670Ser
M0146080 CLKFGNDH_00044 40419 5 Gut 0.50 protein_coding synonymous_variant LOW 5008A>C Arg1670Arg
M0146081 CLKFGNDH_00044 40459 5 Gut 0.50 protein_coding synonymous_variant LOW 4968C>T Ala1656Ala
M0146082 CLKFGNDH_00044 40486 5 Gut 0.50 protein_coding synonymous_variant LOW 4941G>A Val1647Val
M0146083 CLKFGNDH_00044 40519 5 Gut 0.50 protein_coding synonymous_variant LOW 4908A>T Gly1636Gly
M0146084 CLKFGNDH_00044 40535 5 Gut 0.50 protein_coding missense_variant MODERATE 4892G>A Ser1631Asn
M0146085 CLKFGNDH_00044 40561 5 Gut 0.50 protein_coding synonymous_variant LOW 4866T>C Gly1622Gly
M0146086 CLKFGNDH_00044 40591 5 Gut 0.50 protein_coding synonymous_variant LOW 4836T>C Arg1612Arg
M0146087 CLKFGNDH_00044 40612 5 Gut 0.50 protein_coding synonymous_variant LOW 4815G>A Val1605Val
M0146088 CLKFGNDH_00044 40624 5 Gut 0.50 protein_coding synonymous_variant LOW 4803C>T Ser1601Ser
M0146089 CLKFGNDH_00044 40666 5 Gut 0.50 protein_coding synonymous_variant LOW 4761C>T Asn1587Asn
M0146090 CLKFGNDH_00044 40672 5 Gut 0.50 protein_coding synonymous_variant LOW 4755G>T Ala1585Ala
M0146091 CLKFGNDH_00044 40678 5 Gut 0.50 protein_coding synonymous_variant LOW 4749G>T Leu1583Leu
M0146092 CLKFGNDH_00044 40687 5 Gut 0.50 protein_coding synonymous_variant LOW 4740C>A Gly1580Gly
M0146093 CLKFGNDH_00044 40729 5 Gut 0.50 protein_coding synonymous_variant LOW 4698C>T Ser1566Ser
M0146094 CLKFGNDH_00044 40741 5 Gut 0.50 protein_coding synonymous_variant LOW 4686G>T Arg1562Arg
M0146095 CLKFGNDH_00044 40792 5 Gut 0.50 protein_coding synonymous_variant LOW 4635G>A Pro1545Pro
M0146096 CLKFGNDH_00044 40794 5 Gut 0.50 protein_coding missense_variant MODERATE 4633C>T Pro1545Ser
M0146097 CLKFGNDH_00044 40810 5 Gut 0.50 protein_coding synonymous_variant LOW 4617C>A Ala1539Ala
M0146098 CLKFGNDH_00044 40858 5 Gut 0.50 protein_coding synonymous_variant LOW 4569G>A Pro1523Pro
M0146099 CLKFGNDH_00044 41017 5 Gut 0.50 protein_coding synonymous_variant LOW 4410G>T Leu1470Leu
M0146100 CLKFGNDH_00044 41019 5 Gut 0.50 protein_coding synonymous_variant LOW 4408C>T Leu1470Leu
M0146101 CLKFGNDH_00044 41146 5 Gut 0.50 protein_coding synonymous_variant LOW 4281A>C Ala1427Ala
M0146102 CLKFGNDH_00044 41153 5 Gut 0.50 protein_coding missense_variant MODERATE 4274T>A Leu1425Gln
M0146103 CLKFGNDH_00044 41162 5 Gut 0.50 protein_coding missense_variant MODERATE 4265A>G Asn1422Ser
M0146104 CLKFGNDH_00044 41164 5 Gut 0.50 protein_coding synonymous_variant LOW 4263T>C Gly1421Gly
M0146105 CLKFGNDH_00044 41173 5 Gut 0.50 protein_coding synonymous_variant LOW 4254C>T Gly1418Gly
M0146106 CLKFGNDH_00044 41185 5 Gut 0.50 protein_coding synonymous_variant LOW 4242T>C Ile1414Ile
M0146107 CLKFGNDH_00044 41221 5 Gut 0.50 protein_coding synonymous_variant LOW 4206C>T Ala1402Ala
M0146108 CLKFGNDH_00044 41269 5 Gut 0.50 protein_coding synonymous_variant LOW 4158T>C Gly1386Gly
M0146109 CLKFGNDH_00044 41270 5 Gut 0.50 protein_coding missense_variant MODERATE 4157G>C Gly1386Ala
M0146110 CLKFGNDH_00044 41276 5 Gut 0.50 protein_coding missense_variant MODERATE 4151A>G His1384Arg
M0146111 CLKFGNDH_00044 41296 5 Gut 0.50 protein_coding synonymous_variant LOW 4131A>T Gly1377Gly
M0146112 CLKFGNDH_00044 41302 5 Gut 0.50 protein_coding synonymous_variant LOW 4125G>T Ser1375Ser
M0146113 CLKFGNDH_00044 41305 5 Gut 0.50 protein_coding synonymous_variant LOW 4122G>T Leu1374Leu
M0146114 CLKFGNDH_00044 41308 5 Gut 0.50 protein_coding synonymous_variant LOW 4119G>A Thr1373Thr
M0146115 CLKFGNDH_00044 41323 5 Gut 0.50 protein_coding synonymous_variant LOW 4104C>T Ser1368Ser
M0146116 CLKFGNDH_00044 41524 5 Gut 0.50 protein_coding synonymous_variant LOW 3903C>T Ser1301Ser
M0146117 CLKFGNDH_00044 41552 5 Gut 0.50 protein_coding missense_variant MODERATE 3875G>A Ser1292Asn
M0146118 CLKFGNDH_00044 41564 5 Gut 0.50 protein_coding missense_variant MODERATE 3863C>T Ala1288Val
M0146119 CLKFGNDH_00044 41569 5 Gut 0.50 protein_coding synonymous_variant LOW 3858C>A Ala1286Ala
M0146120 CLKFGNDH_00044 41572 5 Gut 0.50 protein_coding synonymous_variant LOW 3855T>C Asp1285Asp
M0146121 CLKFGNDH_00044 41576 5 Gut 0.50 protein_coding missense_variant MODERATE 3851C>G Pro1284Arg
M0146122 CLKFGNDH_00044 41578 5 Gut 0.50 protein_coding synonymous_variant LOW 3849C>T Asn1283Asn
M0146123 CLKFGNDH_00044 41580 5 Gut 0.50 protein_coding missense_variant MODERATE 3847A>C Asn1283His
M0146124 CLKFGNDH_00044 41582 5 Gut 0.50 protein_coding missense_variant MODERATE 3845A>C Asn1282Thr
M0146125 CLKFGNDH_00044 41608 5 Gut 0.50 protein_coding synonymous_variant LOW 3819A>G Glu1273Glu
M0146126 CLKFGNDH_00044 41611 5 Gut 0.50 protein_coding synonymous_variant LOW 3816A>G Gly1272Gly
M0146127 CLKFGNDH_00044 41617 5 Gut 0.50 protein_coding synonymous_variant LOW 3810T>C Arg1270Arg
M0146128 CLKFGNDH_00044 41629 5 Gut 0.50 protein_coding synonymous_variant LOW 3798A>T Thr1266Thr
M0146129 CLKFGNDH_00044 41662 5 Gut 0.50 protein_coding synonymous_variant LOW 3765C>G Gly1255Gly
M0146130 CLKFGNDH_00044 41674 5 Gut 0.50 protein_coding synonymous_variant LOW 3753C>T Ala1251Ala
M0146131 CLKFGNDH_00044 41734 5 Gut 0.50 protein_coding synonymous_variant LOW 3693A>G Thr1231Thr
M0146132 CLKFGNDH_00044 41817 5 Gut 0.50 protein_coding missense_variant MODERATE 3610A>G Ile1204Val
M0146133 CLKFGNDH_00044 41915 5 Gut 0.50 protein_coding missense_variant MODERATE 3512T>C Val1171Ala
M0146134 CLKFGNDH_00044 41935 5 Gut 0.50 protein_coding synonymous_variant LOW 3492A>C Pro1164Pro
M0146135 CLKFGNDH_00044 41938 5 Gut 0.50 protein_coding synonymous_variant LOW 3489G>T Val1163Val
M0146136 CLKFGNDH_00044 42022 5 Gut 0.50 protein_coding synonymous_variant LOW 3405G>A Glu1135Glu
M0146137 CLKFGNDH_00044 42034 5 Gut 0.50 protein_coding synonymous_variant LOW 3393C>T Arg1131Arg
M0146138 CLKFGNDH_00044 42052 5 Gut 0.50 protein_coding synonymous_variant LOW 3375T>C Ile1125Ile
M0146139 CLKFGNDH_00044 42056 5 Gut 0.50 protein_coding missense_variant MODERATE 3371C>T Ala1124Val
M0146140 CLKFGNDH_00044 42120 5 Gut 0.50 protein_coding synonymous_variant LOW 3307T>C Leu1103Leu
M0146141 CLKFGNDH_00044 42136 5 Gut 0.50 protein_coding synonymous_variant LOW 3291T>C Ser1097Ser
M0146142 CLKFGNDH_00044 42145 5 Gut 0.50 protein_coding synonymous_variant LOW 3282C>T Ala1094Ala
M0146143 CLKFGNDH_00044 42208 5 Gut 0.50 protein_coding synonymous_variant LOW 3219T>A Ser1073Ser
M0146144 CLKFGNDH_00044 42212 5 Gut 0.50 protein_coding missense_variant MODERATE 3215A>G Asn1072Ser
M0146145 CLKFGNDH_00044 42246 5 Gut 0.50 protein_coding missense_variant MODERATE 3181A>G Asn1061Asp
M0146146 CLKFGNDH_00044 42269 5 Gut 0.50 protein_coding missense_variant MODERATE 3158T>A Leu1053Gln
M0146147 CLKFGNDH_00044 42355 5 Gut 0.50 protein_coding synonymous_variant LOW 3072T>G Gly1024Gly
M0146148 CLKFGNDH_00044 42367 5 Gut 0.50 protein_coding synonymous_variant LOW 3060C>T Val1020Val
M0146149 CLKFGNDH_00044 42370 5 Gut 0.50 protein_coding synonymous_variant LOW 3057T>A Arg1019Arg
M0146150 CLKFGNDH_00044 42380 5 Gut 0.50 protein_coding missense_variant MODERATE 3047G>A Gly1016Glu
M0146151 CLKFGNDH_00044 42386 5 Gut 0.50 protein_coding missense_variant MODERATE 3041A>C Glu1014Ala
M0146152 CLKFGNDH_00044 42436 5 Gut 0.50 protein_coding synonymous_variant LOW 2991G>T Gly997Gly
M0146153 CLKFGNDH_00044 42451 5 Gut 0.50 protein_coding synonymous_variant LOW 2976C>T Gly992Gly
M0146154 CLKFGNDH_00044 42457 5 Gut 0.50 protein_coding synonymous_variant LOW 2970G>A Val990Val
M0146155 CLKFGNDH_00044 42493 5 Gut 0.50 protein_coding synonymous_variant LOW 2934C>T Arg978Arg
M0146156 CLKFGNDH_00044 42505 5 Gut 0.50 protein_coding synonymous_variant LOW 2922C>T Arg974Arg
M0146157 CLKFGNDH_00044 42514 5 Gut 0.50 protein_coding synonymous_variant LOW 2913A>G Ser971Ser
M0146158 CLKFGNDH_00044 42517 5 Gut 0.50 protein_coding synonymous_variant LOW 2910A>G Thr970Thr
M0146159 CLKFGNDH_00044 42520 5 Gut 0.50 protein_coding synonymous_variant LOW 2907G>A Leu969Leu
M0146160 CLKFGNDH_00044 42522 5 Gut 0.50 protein_coding synonymous_variant LOW 2905C>T Leu969Leu
M0146161 CLKFGNDH_00044 42523 5 Gut 0.50 protein_coding synonymous_variant LOW 2904A>G Lys968Lys
M0146162 CLKFGNDH_00044 42524 5 Gut 0.50 protein_coding missense_variant MODERATE 2903A>C Lys968Thr
M0146163 CLKFGNDH_00044 42541 5 Gut 0.50 protein_coding synonymous_variant LOW 2886T>C Pro962Pro
M0146164 CLKFGNDH_00044 42601 5 Gut 0.50 protein_coding synonymous_variant LOW 2826C>T Ser942Ser
M0146165 CLKFGNDH_00044 42610 5 Gut 0.50 protein_coding synonymous_variant LOW 2817T>A Ala939Ala
M0146166 CLKFGNDH_00044 42641 5 Gut 0.50 protein_coding missense_variant MODERATE 2786A>G Asp929Gly
M0146167 CLKFGNDH_00044 42679 5 Gut 0.50 protein_coding synonymous_variant LOW 2748T>C Asp916Asp
M0146168 CLKFGNDH_00044 42699 5 Gut 0.50 protein_coding missense_variant MODERATE 2728G>A Ala910Thr
M0146169 CLKFGNDH_00044 42718 5 Gut 0.50 protein_coding missense_variant MODERATE 2709C>A Asp903Glu
M0146170 CLKFGNDH_00044 42729 5 Gut 0.50 protein_coding missense_variant MODERATE 2698A>G Ser900Gly
M0146171 CLKFGNDH_00044 42776 5 Gut 0.50 protein_coding missense_variant MODERATE 2651A>T Gln884Leu
M0146172 CLKFGNDH_00044 42777 5 Gut 0.50 protein_coding missense_variant MODERATE 2650C>A Gln884Lys
M0146173 CLKFGNDH_00044 42804 5 Gut 0.50 protein_coding missense_variant MODERATE 2623G>C Val875Leu
M0146174 CLKFGNDH_00044 42808 5 Gut 0.50 protein_coding synonymous_variant LOW 2619G>T Pro873Pro
M0146175 CLKFGNDH_00044 42847 5 Gut 0.50 protein_coding synonymous_variant LOW 2580T>G Leu860Leu
M0146176 CLKFGNDH_00044 42850 5 Gut 0.50 protein_coding synonymous_variant LOW 2577A>G Ala859Ala
M0146177 CLKFGNDH_00044 42851 5 Gut 0.50 protein_coding missense_variant MODERATE 2576C>G Ala859Gly
M0146178 CLKFGNDH_00044 42855 5 Gut 0.50 protein_coding missense_variant MODERATE 2572T>A Ser858Thr
M0146179 CLKFGNDH_00044 42856 5 Gut 0.50 protein_coding synonymous_variant LOW 2571G>A Lys857Lys
M0146180 CLKFGNDH_00044 42862 5 Gut 0.50 protein_coding missense_variant MODERATE 2565T>G His855Gln
M0146181 CLKFGNDH_00044 42863 5 Gut 0.50 protein_coding missense_variant MODERATE 2564A>T His855Leu
M0146182 CLKFGNDH_00044 42874 5 Gut 0.50 protein_coding synonymous_variant LOW 2553T>C Thr851Thr
M0146183 CLKFGNDH_00044 42903 5 Gut 0.50 protein_coding missense_variant MODERATE 2524A>G Thr842Ala
M0146184 CLKFGNDH_00044 42934 5 Gut 0.50 protein_coding synonymous_variant LOW 2493G>C Pro831Pro
M0146185 CLKFGNDH_00044 43003 5 Gut 0.50 protein_coding synonymous_variant LOW 2424T>C Ser808Ser
M0146186 CLKFGNDH_00044 43063 5 Gut 0.50 protein_coding synonymous_variant LOW 2364T>G Val788Val
M0146187 CLKFGNDH_00044 43067 5 Gut 0.50 protein_coding missense_variant MODERATE 2360A>C Lys787Thr
M0146188 CLKFGNDH_00044 43078 5 Gut 0.50 protein_coding synonymous_variant LOW 2349C>T Ser783Ser
M0146189 CLKFGNDH_00044 43089 5 Gut 0.50 protein_coding missense_variant MODERATE 2338C>T His780Tyr
M0146190 CLKFGNDH_00044 43130 5 Gut 0.50 protein_coding missense_variant MODERATE 2297T>C Met766Thr
M0146191 CLKFGNDH_00044 43143 5 Gut 0.50 protein_coding missense_variant MODERATE 2284G>T Asp762Tyr
M0146192 CLKFGNDH_00044 43363 5 Gut 0.50 protein_coding synonymous_variant LOW 2064T>C Gly688Gly
M0146193 CLKFGNDH_00044 43392 5 Gut 0.50 protein_coding missense_variant MODERATE 2035A>C Asn679His
M0146194 CLKFGNDH_00044 43402 5 Gut 0.50 protein_coding synonymous_variant LOW 2025G>A Thr675Thr
M0146195 CLKFGNDH_00044 43414 5 Gut 0.50 protein_coding synonymous_variant LOW 2013C>A Ile671Ile
M0146196 CLKFGNDH_00044 43417 5 Gut 0.50 protein_coding synonymous_variant LOW 2010T>G Val670Val
M0146197 CLKFGNDH_00044 43431 5 Gut 0.50 protein_coding missense_variant MODERATE 1996T>C Tyr666His
M0146198 CLKFGNDH_00044 43468 5 Gut 0.50 protein_coding synonymous_variant LOW 1959A>G Glu653Glu
M0146199 CLKFGNDH_00044 43469 5 Gut 0.50 protein_coding missense_variant MODERATE 1958A>G Glu653Gly
M0146200 CLKFGNDH_00044 43474 5 Gut 0.50 protein_coding synonymous_variant LOW 1953C>T Arg651Arg
M0146201 CLKFGNDH_00044 43498 5 Gut 0.50 protein_coding synonymous_variant LOW 1929T>C Ser643Ser
M0146202 CLKFGNDH_00044 43528 5 Gut 0.50 protein_coding synonymous_variant LOW 1899C>A Ala633Ala
M0146203 CLKFGNDH_00044 43531 5 Gut 0.50 protein_coding synonymous_variant LOW 1896C>T Thr632Thr
M0146204 CLKFGNDH_00044 43546 5 Gut 0.50 protein_coding synonymous_variant LOW 1881G>T Pro627Pro
M0146205 CLKFGNDH_00044 43567 5 Gut 0.50 protein_coding synonymous_variant LOW 1860A>G Thr620Thr
M0146206 CLKFGNDH_00044 43657 5 Gut 0.50 protein_coding synonymous_variant LOW 1770C>T Ser590Ser
M0146207 CLKFGNDH_00044 43669 5 Gut 0.50 protein_coding synonymous_variant LOW 1758C>T Asp586Asp
M0146208 CLKFGNDH_00044 43672 5 Gut 0.50 protein_coding synonymous_variant LOW 1755G>A Gly585Gly
M0146209 CLKFGNDH_00044 43675 5 Gut 0.50 protein_coding synonymous_variant LOW 1752T>C Ala584Ala
M0146210 CLKFGNDH_00044 43695 5 Gut 0.50 protein_coding missense_variant MODERATE 1732G>A Val578Ile
M0146211 CLKFGNDH_00044 43705 5 Gut 0.50 protein_coding synonymous_variant LOW 1722A>G Pro574Pro
M0146212 CLKFGNDH_00044 43732 5 Gut 0.50 protein_coding synonymous_variant LOW 1695A>G Gln565Gln
M0146213 CLKFGNDH_00044 43735 5 Gut 0.50 protein_coding synonymous_variant LOW 1692G>A Glu564Glu
M0146214 CLKFGNDH_00044 43741 5 Gut 0.50 protein_coding synonymous_variant LOW 1686C>G Gly562Gly
M0146215 CLKFGNDH_00044 43757 5 Gut 0.50 protein_coding missense_variant MODERATE 1670T>C Ile557Thr
M0146216 CLKFGNDH_00044 43813 5 Gut 0.50 protein_coding synonymous_variant LOW 1614G>A Gly538Gly
M0146217 CLKFGNDH_00044 43833 5 Gut 0.50 protein_coding missense_variant MODERATE 1594A>G Ile532Val
M0146218 CLKFGNDH_00044 43897 5 Gut 0.50 protein_coding synonymous_variant LOW 1530T>C Gly510Gly
M0146219 CLKFGNDH_00044 43906 5 Gut 0.50 protein_coding synonymous_variant LOW 1521C>T Val507Val
M0146220 CLKFGNDH_00044 43909 5 Gut 0.50 protein_coding synonymous_variant LOW 1518T>C Ile506Ile
M0146221 CLKFGNDH_00044 43915 5 Gut 0.50 protein_coding synonymous_variant LOW 1512A>C Thr504Thr
M0146222 CLKFGNDH_00044 43924 5 Gut 0.50 protein_coding synonymous_variant LOW 1503A>G Pro501Pro
M0146223 CLKFGNDH_00044 43927 5 Gut 0.50 protein_coding synonymous_variant LOW 1500A>G Thr500Thr
M0146224 CLKFGNDH_00044 43933 5 Gut 0.50 protein_coding synonymous_variant LOW 1494C>T Ala498Ala
M0146225 CLKFGNDH_00044 43950 5 Gut 0.50 protein_coding synonymous_variant LOW 1477T>C Leu493Leu
M0146226 CLKFGNDH_00044 43960 5 Gut 0.50 protein_coding synonymous_variant LOW 1467G>A Gly489Gly
M0146227 CLKFGNDH_00044 43972 5 Gut 0.50 protein_coding synonymous_variant LOW 1455A>G Glu485Glu
M0146228 CLKFGNDH_00044 44011 5 Gut 0.50 protein_coding synonymous_variant LOW 1416A>G Ser472Ser
M0146229 CLKFGNDH_00044 44026 5 Gut 0.50 protein_coding synonymous_variant LOW 1401T>C Ala467Ala
M0146230 CLKFGNDH_00044 44069 5 Gut 0.50 protein_coding missense_variant MODERATE 1358T>C Val453Ala
M0146231 CLKFGNDH_00044 44074 5 Gut 0.50 protein_coding synonymous_variant LOW 1353G>A Glu451Glu
M0146232 CLKFGNDH_00044 44077 5 Gut 0.50 protein_coding synonymous_variant LOW 1350G>T Ala450Ala
M0146233 CLKFGNDH_00044 44182 5 Gut 0.50 protein_coding synonymous_variant LOW 1245G>A Arg415Arg
M0146234 CLKFGNDH_00044 44233 5 Gut 0.50 protein_coding synonymous_variant LOW 1194C>T Asp398Asp
M0146235 CLKFGNDH_00044 44236 5 Gut 0.50 protein_coding synonymous_variant LOW 1191T>C Arg397Arg
M0146236 CLKFGNDH_00044 44260 5 Gut 0.50 protein_coding synonymous_variant LOW 1167G>A Glu389Glu
M0146237 CLKFGNDH_00044 44401 5 Gut 0.50 protein_coding synonymous_variant LOW 1026A>G Arg342Arg
M0146238 CLKFGNDH_00044 44425 5 Gut 0.50 protein_coding synonymous_variant LOW 1002T>C Phe334Phe
M0146239 CLKFGNDH_00044 44491 5 Gut 0.50 protein_coding missense_variant MODERATE 936G>C Glu312Asp
M0146240 CLKFGNDH_00044 44501 5 Gut 0.50 protein_coding missense_variant MODERATE 926T>C Val309Ala
M0146241 CLKFGNDH_00044 44503 5 Gut 0.50 protein_coding synonymous_variant LOW 924T>A Ala308Ala
M0146242 CLKFGNDH_00044 44505 5 Gut 0.50 protein_coding missense_variant MODERATE 922G>C Ala308Pro
M0146243 CLKFGNDH_00044 44525 5 Gut 0.50 protein_coding missense_variant MODERATE 902C>T Thr301Ile
M0146244 CLKFGNDH_00044 44707 5 Gut 0.50 protein_coding synonymous_variant LOW 720A>T Ala240Ala
M0146245 CLKFGNDH_00044 44709 5 Gut 0.50 protein_coding missense_variant MODERATE 718G>A Ala240Thr
M0146246 CLKFGNDH_00044 44956 5 Gut 0.50 protein_coding synonymous_variant LOW 471C>T His157His
M0146247 CLKFGNDH_00044 45115 5 Gut 0.50 protein_coding missense_variant MODERATE 312T>A Asp104Glu
M0146248 CLKFGNDH_00044 45121 5 Gut 0.50 protein_coding synonymous_variant LOW 306G>T Leu102Leu
M0146249 CLKFGNDH_00044 45124 5 Gut 0.50 protein_coding synonymous_variant LOW 303C>T Arg101Arg
M0146250 CLKFGNDH_00044 45127 5 Gut 0.50 protein_coding synonymous_variant LOW 300G>A Lys100Lys
M0146251 CLKFGNDH_00044 45130 5 Gut 0.50 protein_coding synonymous_variant LOW 297T>C Asp99Asp
M0146252 CLKFGNDH_00044 45133 5 Gut 0.50 protein_coding synonymous_variant LOW 294C>G Gly98Gly
M0146253 CLKFGNDH_00044 45136 5 Gut 0.50 protein_coding synonymous_variant LOW 291T>G Gly97Gly
M0146254 CLKFGNDH_00044 45139 5 Gut 0.50 protein_coding missense_variant MODERATE 288A>C Leu96Phe
M0146255 CLKFGNDH_00044 45141 5 Gut 0.50 protein_coding synonymous_variant LOW 286T>C Leu96Leu
M0146256 CLKFGNDH_00044 45203 5 Gut 0.50 protein_coding missense_variant MODERATE 224G>A Arg75Lys
M0146257 CLKFGNDH_00044 45205 5 Gut 0.50 protein_coding synonymous_variant LOW 222C>T Asn74Asn
M0146258 CLKFGNDH_00044 45352 5 Gut 0.50 protein_coding synonymous_variant LOW 75A>G Val25Val
M0146259 CLKFGNDH_00045 45690 5 Gut 0.50 protein_coding synonymous_variant LOW 1971A>C Ile657Ile
M0146260 CLKFGNDH_00045 45830 5 Gut 0.50 protein_coding missense_variant MODERATE 1831G>A Val611Ile
M0146261 CLKFGNDH_00045 45924 5 Gut 0.50 protein_coding synonymous_variant LOW 1737A>G Pro579Pro
M0146262 CLKFGNDH_00045 46227 5 Gut 0.50 protein_coding synonymous_variant LOW 1434T>C Thr478Thr
M0146263 CLKFGNDH_00045 46374 5 Gut 0.50 protein_coding synonymous_variant LOW 1287A>G Thr429Thr
M0146264 CLKFGNDH_00045 46863 5 Gut 0.50 protein_coding synonymous_variant LOW 798T>C Thr266Thr
M0146265 CLKFGNDH_00045 46872 5 Gut 0.50 protein_coding synonymous_variant LOW 789C>G Thr263Thr
M0146266 CLKFGNDH_00045 46899 5 Gut 0.50 protein_coding synonymous_variant LOW 762C>T Cys254Cys
M0146267 CLKFGNDH_00045 46911 5 Gut 0.50 protein_coding synonymous_variant LOW 750G>A Leu250Leu
M0146268 CLKFGNDH_00045 46950 5 Gut 0.50 protein_coding synonymous_variant LOW 711C>A Ile237Ile
M0146269 CLKFGNDH_00045 46953 5 Gut 0.50 protein_coding synonymous_variant LOW 708A>G Lys236Lys
M0146270 CLKFGNDH_00045 47427 5 Gut 0.50 protein_coding synonymous_variant LOW 234C>A Val78Val
M0146271 CLKFGNDH_00044 47721 5 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -2295G>A None
M0146272 CLKFGNDH_00046 47966 5 Gut 0.50 protein_coding synonymous_variant LOW 723G>A Glu241Glu
M0146273 CLKFGNDH_00048 49499 6 Gut 0.60 protein_coding synonymous_variant LOW 2517A>G Gly839Gly
M0146274 CLKFGNDH_00048 49508 6 Gut 0.60 protein_coding synonymous_variant LOW 2508C>T Asp836Asp
M0146275 CLKFGNDH_00048 49526 6 Gut 0.60 protein_coding synonymous_variant LOW 2490T>C Ser830Ser
M0146276 CLKFGNDH_00048 49535 6 Gut 0.60 protein_coding synonymous_variant LOW 2481T>G Gly827Gly
M0146277 CLKFGNDH_00048 49565 6 Gut 0.60 protein_coding synonymous_variant LOW 2451T>C Ile817Ile
M0146278 CLKFGNDH_00048 49568 6 Gut 0.60 protein_coding synonymous_variant LOW 2448T>C Asp816Asp
M0146279 CLKFGNDH_00048 49571 6 Gut 0.60 protein_coding synonymous_variant LOW 2445C>G Gly815Gly
M0146280 CLKFGNDH_00045 52463 6 Gut 0.60 protein_coding upstream_gene_variant MODIFIER -4803T>C None
M0146281 CLKFGNDH_00050 53671 6 Gut 0.60 protein_coding missense_variant MODERATE 94T>A Leu32Met
M0146282 CLKFGNDH_00052 54449 6 Gut 0.60 protein_coding missense_variant MODERATE 119T>C Val40Ala
M0146283 CLKFGNDH_00054 55244 5 Gut 0.50 protein_coding synonymous_variant LOW 451C>A Arg151Arg
M0146284 CLKFGNDH_00055 55735 6 Gut 0.60 protein_coding synonymous_variant LOW 210A>G Leu70Leu
M0146285 CLKFGNDH_00056 56092 6 Gut 0.60 protein_coding missense_variant MODERATE 1730T>A Leu577Gln
M0146286 CLKFGNDH_00058 58777 6 Gut 0.60 protein_coding synonymous_variant LOW 160C>T Leu54Leu
M0146287 CLKFGNDH_00058 58820 6 Gut 0.60 protein_coding synonymous_variant LOW 117G>A Gln39Gln
M0146288 CLKFGNDH_00060 59610 6 Gut 0.60 protein_coding missense_variant MODERATE 109G>A Asp37Asn
M0146289 CLKFGNDH_00062 60804 5 Gut 0.50 protein_coding missense_variant MODERATE 562C>T Arg188Trp
M0146290 CLKFGNDH_00064 63633 6 Gut 0.60 protein_coding missense_variant MODERATE 740G>A Arg247Gln
M0146291 CLKFGNDH_00064 64193 6 Gut 0.60 protein_coding synonymous_variant LOW 180T>C Thr60Thr
M0146292 CLKFGNDH_00065 64452 6 Gut 0.60 protein_coding missense_variant MODERATE 88C>T Arg30Trp
M0146293 CLKFGNDH_00065 64526 6 Gut 0.60 protein_coding missense_variant MODERATE 14C>T Ala5Val
M0146294 CLKFGNDH_00066 64632 6 Gut 0.60 protein_coding missense_variant MODERATE 122G>A Gly41Glu
M0146295 CLKFGNDH_00066 64689 6 Gut 0.60 protein_coding missense_variant MODERATE 65G>T Arg22Leu
M0146296 CLKFGNDH_00069 65812 6 Gut 0.60 protein_coding synonymous_variant LOW 483C>T Val161Val
M0146297 CLKFGNDH_00069 65987 6 Gut 0.60 protein_coding missense_variant MODERATE 308C>T Ala103Val
M0146298 CLKFGNDH_00070 66361 6 Gut 0.60 protein_coding missense_variant MODERATE 1351A>C Met451Leu
M0146299 CLKFGNDH_00070 67480 6 Gut 0.60 protein_coding missense_variant MODERATE 232A>G Thr78Ala
M0146300 CLKFGNDH_00072 68572 5 Gut 0.50 protein_coding missense_variant MODERATE 421C>T Arg141Cys
M0146301 CLKFGNDH_00073 69158 4 Gut 0.40 protein_coding synonymous_variant LOW 168G>A Leu56Leu
M0146302 CLKFGNDH_00074 69565 4 Gut 0.40 protein_coding synonymous_variant LOW 135T>C Phe45Phe
M0146303 CLKFGNDH_00075 69819 4 Gut 0.40 protein_coding synonymous_variant LOW 309T>C Asp103Asp
M0146304 CLKFGNDH_00075 70109 4 Gut 0.40 protein_coding missense_variant MODERATE 19C>T Arg7Cys
M0146305 CLKFGNDH_00076 70244 3 Gut 0.30 protein_coding missense_variant MODERATE 683C>T Thr228Met
M0146306 CLKFGNDH_00076 70782 4 Gut 0.40 protein_coding missense_variant MODERATE 145C>T His49Tyr
M0146307 CLKFGNDH_00069 70999 4 Gut 0.40 protein_coding upstream_gene_variant MODIFIER -4705T>G None
M0146308 CLKFGNDH_00069 71038 4 Gut 0.40 protein_coding upstream_gene_variant MODIFIER -4744T>A None
M0146309 CLKFGNDH_00033 34995 4 Gut 0.40 protein_coding upstream_gene_variant MODIFIER -4307G>T None
M0146310 CLKFGNDH_00034 36782 4 Gut 0.40 protein_coding upstream_gene_variant MODIFIER -4389G>A None
M0146311 CLKFGNDH_00039 37168 4 Gut 0.40 protein_coding missense_variant MODERATE 269T>G Val90Gly
M0146312 CLKFGNDH_00044 42790 4 Gut 0.40 protein_coding missense_variant MODERATE 2637C>A Asn879Lys
M0146313 CLKFGNDH_00044 47782 4 Gut 0.40 protein_coding upstream_gene_variant MODIFIER -2356A>C None
M0146314 CLKFGNDH_00056 56785 4 Gut 0.40 protein_coding missense_variant MODERATE 1037A>T Gln346Leu
M0146315 CLKFGNDH_00056 57745 4 Gut 0.40 protein_coding missense_variant MODERATE 77C>A Ala26Asp
M0146316 CLKFGNDH_00060 59331 4 Gut 0.40 protein_coding missense_variant MODERATE 388T>G Ser130Ala
M0146317 CLKFGNDH_00061 59870 4 Gut 0.40 protein_coding synonymous_variant LOW 867G>A Pro289Pro
M0146318 CLKFGNDH_00068 65411 4 Gut 0.40 protein_coding stop_gained HIGH 358G>T Glu120*
M0146319 CLKFGNDH_00067 70140 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4737G>T None
M0146320 CLKFGNDH_00077 71325 3 Gut 0.30 protein_coding missense_variant MODERATE 172G>A Glu58Lys
M0146321 CLKFGNDH_00070 71783 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4072C>A None
M0146322 CLKFGNDH_00070 72460 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4749T>C None
M0146323 CLKFGNDH_00072 73583 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4591G>A None
M0146324 CLKFGNDH_00072 73609 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4617T>G None
M0146325 CLKFGNDH_00072 73637 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4645C>T None
M0146326 CLKFGNDH_00072 73639 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4647T>C None
M0146327 CLKFGNDH_00073 74049 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4724G>T None
M0146328 CLKFGNDH_00073 74161 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4836A>C None
M0146329 CLKFGNDH_00073 74250 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4925G>C None
M0146330 CLKFGNDH_00073 74277 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4952G>T None
M0146331 CLKFGNDH_00074 74368 3 Gut 0.30 protein_coding upstream_gene_variant MODIFIER -4669C>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
CLKFGNDH_00015 VFG049039 LPS 99.5 0 1 1188 1.0 1 Immune modulation glycosyltransferase prediction
CLKFGNDH_00016 VFG049050 LPS 99.8 1.1e-255 1 443 1.0 1 Immune modulation ABC transporter ATP-binding protein prediction
CLKFGNDH_00017 VFG049061 LPS 99.6 6.8e-150 1 277 1.0 1 Immune modulation ABC transporter permease prediction
CLKFGNDH_00018 VFG049072 LPS 99.6 1.5e-165 1 276 1.0 1 Immune modulation glycosyltransferase family 2 protein prediction
CLKFGNDH_00019 VFG048804 Capsule 97.8 1.1e-103 1 183 0.9946 0.9946 Immune modulation dTDP-4-dehydrorhamnose 3,5-epimerase prediction
CLKFGNDH_00020 VFG048815 Capsule 99.7 5.4e-169 1 296 1.0 1 Immune modulation dTDP-4-dehydrorhamnose reductase prediction
CLKFGNDH_00021 VFG048826 Capsule 98.6 9.5e-163 1 287 0.9965 0.9931 Immune modulation glucose-1-phosphate thymidylyltransferase prediction
CLKFGNDH_00022 VFG049107 LPS 99.2 1.6e-212 1 354 1.0 1 Immune modulation dTDP-glucose 4,6-dehydratase prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
CLKFGNDH_00015 AXS08256.1|GT2|GT4|GT99 99.5 0 1 1188 1 1
CLKFGNDH_00018 ASV27474.1|GT2 99.6 2.37e-209 1 276 1 1
CLKFGNDH_00078 APK46696.1|GH23 100 1e-123 1 169 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
CLKFGNDH_00022 9.B.18.2.4 76.1 2.9e-164 2 352 0.9915 0.9887 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.18 The Xanthan Glycosyl Transferase, GumD (GumD) Family