Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C179
  Reference Plasmid   CP103126.1
  Reference Plasmid Size   4958
  Reference Plasmid GC Content   0.42
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0146438 HJOEPPNF_00003 1725 4 Gut 0.21 protein_coding missense_variant MODERATE 172A>G Ile58Val
M0146439 HJOEPPNF_00004 2394 15 Gut 0.79 protein_coding synonymous_variant LOW 363A>G Leu121Leu
M0146440 HJOEPPNF_00004 2434 3 Gut 0.16 protein_coding missense_variant MODERATE 323T>C Leu108Pro
M0146441 HJOEPPNF_00005 2819 3 Gut 0.16 protein_coding synonymous_variant LOW 111A>G Glu37Glu
M0146442 HJOEPPNF_00002 1064 8 Gut 0.42 protein_coding missense_variant MODERATE 313A>G Ile105Val
M0146443 HJOEPPNF_00003 3650 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -1754T>C None
M0146444 HJOEPPNF_00003 3651 11 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -1755T>C None
M0146445 HJOEPPNF_00003 3659 8 Gut 0.42 protein_coding upstream_gene_variant MODIFIER -1763C>A None
M0146446 HJOEPPNF_00003 3665 11 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -1769C>G None
M0146447 HJOEPPNF_00003 3668 10 Gut 0.53 protein_coding upstream_gene_variant MODIFIER -1772C>A None
M0146448 HJOEPPNF_00003 4413 11 Gut 0.58 protein_coding upstream_gene_variant MODIFIER -2517T>C None
M0146449 HJOEPPNF_00001 54 3 Gut 0.16 protein_coding synonymous_variant LOW 54C>T Asp18Asp
M0146450 HJOEPPNF_00001 120 3 Gut 0.16 protein_coding synonymous_variant LOW 120C>T Cys40Cys
M0146451 HJOEPPNF_00001 126 3 Gut 0.16 protein_coding synonymous_variant LOW 126C>T Gly42Gly
M0146452 HJOEPPNF_00001 405 3 Gut 0.16 protein_coding synonymous_variant LOW 405T>C Asn135Asn
M0146453 HJOEPPNF_00001 426 3 Gut 0.16 protein_coding synonymous_variant LOW 426A>G Thr142Thr
M0146454 HJOEPPNF_00001 439 3 Gut 0.16 protein_coding missense_variant MODERATE 439A>G Ser147Gly
M0146455 HJOEPPNF_00001 459 3 Gut 0.16 protein_coding synonymous_variant LOW 459T>C Asn153Asn
M0146456 HJOEPPNF_00003 4749 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -2853A>G None
M0146457 HJOEPPNF_00003 4764 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -2868T>C None
M0146458 HJOEPPNF_00003 4776 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -2880C>T None
M0146459 HJOEPPNF_00003 4857 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -2961C>T None
M0146460 HJOEPPNF_00003 4553 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -2657A>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term